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Gene TIFABandC5orf20TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
38 supporting clones for gene TIFABandC5orf20 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AB161513   .a 1 to 240 1 to 240   tiling clone,   240/240
(100 %)
0 diff
(100 %id)
NM_001099221.1   .a 1 to 1273 1 to 1273   RefSeq, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1273/1285
(99 %)
1 diff
(100.0 %id)
AK131088 Spleen .a 102 to 5914 1 to 5814 exact tiling clone, available from FLJ,   5814/5814
(100 %)
3 diff
(100.0 %id)
AI554057 pooled .a 808 to 1272 465 to 1       465/465
(100 %)
0 diff
(100 %id)
BX119085 lymph node, lymphoma, follicular mixed small and largecell .a 814 to 1273 472 to 13   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 460/472
(97 %)
0 diff
(100 %id)
AI439681 lymph node, lymphoma, follicular mixed small and largecell .a 818 to 1271 454 to 1       454/454
(100 %)
0 diff
(100 %id)
AI372915 uterus .a 822 to 1271 450 to 1       450/450
(100 %)
1 diff
(99.8 %id)
AI192229 uterus .a 852 to 1271 420 to 1       420/420
(100 %)
0 diff
(100 %id)
AA565873 adrenal adenoma, adrenal gland .a 956 to 1271 315 to 1       315/315
(100 %)
2 diff
(99.4 %id)
AB074498   .a 2793 to 5926 1 to 3134 exact tiling clone, AAA   3134/3134
(100 %)
1 diff
(100.0 %id)
NM_130848.2   .a 2793 to 5926 1 to 3134 exact RefSeq, AAA   3134/3134
(100 %)
0 diff
(100 %id)
TI_1320131349   .a 2849 to 3854 1057 to 54 T75P N97D R117*   Submitted on the opposite strand 1004/1199
(83 %)
0 diff
(100 %id)
BC117156 Lung, PCR rescued clones .a 2854 to 3854 1 to 1001 T75P N97D R117*     1001/1001
(100 %)
4 diff
(99.7 %id)
BC117158 Lung, PCR rescued clones .a 2854 to 3854 1 to 1001 T75P N97D R117*     1001/1001
(100 %)
4 diff
(99.7 %id)
TI_1320133983   .a 2862 to 3416 558 to 3       556/558
(99 %)
0 diff
(100 %id)
TI_1320131357   .a 2900 to 3854 1019 to 71 T75P N97D R117*     949/1174
(80 %)
0 diff
(100 %id)
BC069608 PCR rescued clones .a 2949 to 4015 1 to 1067 exact available from MGC,   1067/1067
(100 %)
0 diff
(100 %id)
BC069610 PCR rescued clones .a 2949 to 4015 1 to 1067 exact available from MGC,   1067/1067
(100 %)
0 diff
(100 %id)
BC074831 Lung, PCR rescued clones .a 3007 to 3806 1 to 800 exact available from MGC,   800/800
(100 %)
0 diff
(100 %id)
BC074832 Lung, PCR rescued clones .a 3007 to 3806 1 to 800 exact available from MGC,   800/800
(100 %)
0 diff
(100 %id)
EL736239 mixed .a 3033 to 3712 1 to 681       681/686
(99 %)
2 diff
(99.8 %id)
TI_1948227278   .a 3033 to 3770 140 to 882 A161G V162S K163*     743/1357
(54 %)
29 diff
(97.9 %id)
TI_1948227279   .a 3033 to 3360 128 to 455       328/357
(91 %)
6 diff
(98.4 %id)
TI_1948227280   .a 3033 to 3770 861 to 120 Y3F A6S H8P I9H Q10T ...     742/1194
(62 %)
0 diff
(100 %id)
TI_1948227570   .a 3033 to 3325 130 to 422       293/321
(91 %)
6 diff
(98.2 %id)
TI_1948227571   .a 3033 to 3770 861 to 123 A5S A6S T7N H8P I9H ...     739/1170
(63 %)
0 diff
(100 %id)
TI_1948228153   .a 3033 to 3670 119 to 759       641/1371
(46 %)
28 diff
(98.0 %id)
TI_1948228154   .a 3033 to 3753 129 to 859       731/1440
(50 %)
22 diff
(98.5 %id)
TI_1948228155   .a 3068 to 3770 835 to 121       715/1216
(58 %)
0 diff
(100 %id)
TI_1320133989   .a 3213 to 3854 14 to 655       642/1251
(51 %)
5 diff
(99.7 %id)
BF358185 lung_normal .a 3325 to 3598 278 to 5       274/278
(98 %)
0 diff
(100 %id)
AJ715236 bone marrow .a 5172 to 5618 11 to 457       447/457
(97 %)
6 diff
(98.7 %id)
BX114721 heart .a 5308 to 5779 1 to 472       472/472
(100 %)
1 diff
(99.8 %id)
BF352034 head_neck .a 5378 to 5651 31 to 305       275/305
(90 %)
6 diff
(98.1 %id)
AI141949 heart .a 5524 to 5915 392 to 1       392/392
(100 %)
1 diff
(99.8 %id)
AI673027 thymus, pooled .a 5606 to 5923 321 to 4       318/321
(99 %)
0 diff
(100 %id)
AA342611 Spleen .a 5710 to 5914 205 to 1       205/205
(100 %)
0 diff
(100 %id)
AW136257   Gene TIFABandC5orf20, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes DI