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Gene DBC1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
86 supporting clones for gene DBC1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CD652209 Embryonic Stem cells .a 1 to 824 12 to 833   tiling clone,   822/834
(98 %)
13 diff
(98.5 %id)
TI_57221025   .a 1 to 688 28 to 721       694/791
(87 %)
23 diff
(97.1 %id)
BI755901 brain .a 10 to 688 1 to 686       686/756
(90 %)
21 diff
(97.3 %id)
NM_014618.2   .a 10 to 3205 1 to 3196 exact RefSeq,   3196/3196
(100 %)
0 diff
(100 %id)
DC315996 amygdala .a 16 to 481 1 to 472       472/472
(100 %)
9 diff
(98.1 %id)
BI549612 brain, hippocampus .a 17 to 624 1 to 632       630/632
(99 %)
36 diff
(94.4 %id)
TI_44170819   .a 22 to 624 123 to 749       625/749
(83 %)
16 diff
(97.9 %id)
DC305194 cerebellum .a 36 to 605 1 to 572       572/572
(100 %)
4 diff
(99.4 %id)
CN305190 embryonic stem cells, cell lines H1, H7, andH9 .a 42 to 794 1 to 755       755/755
(100 %)
6 diff
(99.3 %id)
BG419841 Kidney, renal cell adenocarcinoma .a 45 to 684 1 to 641   available from MGC,   641/710
(90 %)
8 diff
(98.9 %id)
AF027734 brain .a 48 to 3205 1 to 3158 A437T tiling clone,   3158/3158
(100 %)
5 diff
(99.9 %id)
TI_57242199   .a 51 to 797 62 to 810       749/810
(92 %)
15 diff
(98.2 %id)
CX751995 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 55 to 729 1 to 674       674/674
(100 %)
3 diff
(99.6 %id)
BC065196 Brain, fetal, whole pooled .a 57 to 2921 1 to 2865 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 2865/2865
(100 %)
3 diff
(99.9 %id)
BI917293 brain .a 57 to 797 1 to 743       743/743
(100 %)
9 diff
(98.8 %id)
DA740834   .a 72 to 579 2 to 511   capped   510/510
(100 %)
4 diff
(99.3 %id)
BX441404 brain, fetal brain .a 76 to 1046 36 to 1006       971/1011
(96 %)
9 diff
(99.2 %id)
DB471581 hippocampus .a 101 to 612 1 to 512       512/512
(100 %)
7 diff
(98.7 %id)
BQ889616 dorsal root ganglia .a 120 to 1050 1 to 932       932/934
(99 %)
14 diff
(98.6 %id)
DN990585 brain, whole brain .a 226 to 905 8 to 687       680/687
(98 %)
6 diff
(99.2 %id)
AA319716 adrenal gland .a 389 to 654 1 to 278       278/282
(98 %)
12 diff
(95.8 %id)
TI_1948091314   .a 464 to 1302 130 to 979       850/1433
(59 %)
36 diff
(97.5 %id)
TI_1948091429   .a 464 to 1158 135 to 832       698/1420
(49 %)
16 diff
(98.9 %id)
TI_1948091549   .a 464 to 1158 133 to 828       696/1368
(50 %)
16 diff
(98.9 %id)
TI_1948091672   .a 464 to 1250 134 to 927       794/1470
(54 %)
31 diff
(97.9 %id)
CV030162 mixed .a 466 to 1101 1 to 636       636/636
(100 %)
1 diff
(99.9 %id)
CX753140 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 1022 to 1700 1 to 679       679/679
(100 %)
55 diff
(91.9 %id)
BF309931 muscle, rhabdomyosarcoma .a 1075 to 1764 1 to 689   tiling clone,   689/689
(100 %)
3 diff
(99.6 %id)
BG323455 Kidney, renal cell adenocarcinoma .a 1123 to 1724 1 to 636       636/1215
(52 %)
51 diff
(95.9 %id)
BF308764 muscle, rhabdomyosarcoma .a 1149 to 1972 7 to 850       715/878
(81 %)
30 diff
(96.6 %id)
BG828045 muscle, rhabdomyosarcoma .a 1149 to 1935 7 to 791       785/792
(99 %)
3 diff
(99.7 %id)
CX752381 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 1241 to 2009 1 to 769     Submitted on the opposite strand 769/776
(99 %)
78 diff
(90.0 %id)
CD625836   .a 1271 to 2056 1 to 787       787/789
(99 %)
12 diff
(98.5 %id)
CN305189 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1337 to 1611 1 to 277       277/302
(91 %)
6 diff
(98.1 %id)
CD625837   .a 1609 to 2390 792 to 12       781/822
(95 %)
0 diff
(100 %id)
BG540471 lung .a 1610 to 2162 129 to 690       562/690
(81 %)
6 diff
(99.2 %id)
AA326304 brain, cerebellum .a 1668 to 1876 1 to 208       208/208
(100 %)
3 diff
(98.6 %id)
AW955370   .a 1669 to 2312 1 to 634       634/638
(99 %)
14 diff
(97.9 %id)
BF348205 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1853 to 2511 1 to 658       658/658
(100 %)
1 diff
(99.9 %id)
CD625834   .a 1884 to 2579 15 to 709       695/709
(98 %)
6 diff
(99.2 %id)
CN305188 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2243 to 2882 673 to 34     Submitted on the opposite strand 640/673
(95 %)
0 diff
(100 %id)
CD625835   .a 2307 to 2780 491 to 13       479/491
(97 %)
13 diff
(97.4 %id)
BX096489 whole brain .a 2319 to 2850 532 to 2       531/532
(99 %)
0 diff
(100 %id)
AA599898 bone marrow stroma .a 2348 to 2813 465 to 1       465/465
(100 %)
2 diff
(99.6 %id)
CB047003 2 pooled tumors (clear cell type), Kidney .a 2453 to 2919 1 to 467   fully sequenced, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 467/467
(100 %)
4 diff
(99.2 %id)
BF844856 head_neck .a 2486 to 3046 48 to 609       562/625
(89 %)
19 diff
(97.0 %id)
AI753300 bone marrow stroma .a 2490 to 2814 343 to 19   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 325/325
(100 %)
1 diff
(99.7 %id)
AA948693 2 pooled tumors (clear cell type), Kidney .a 2496 to 2920 425 to 3       423/425
(99 %)
0 diff
(100 %id)
CB047002 2 pooled tumors (clear cell type), Kidney .a 2498 to 2919 448 to 27   fully sequenced, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 422/422
(100 %)
0 diff
(100 %id)
BM929506 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2539 to 2919 1 to 381   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 381/381
(100 %)
0 diff
(100 %id)
BM726737 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2563 to 3112 1 to 550   fully sequenced, Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 550/550
(100 %)
0 diff
(100 %id)
AW971245   .a 2580 to 2919 97 to 436   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 340/436
(77 %)
6 diff
(98.7 %id)
AA493732 thyroid .a 2580 to 2919 7 to 345   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 339/345
(98 %)
3 diff
(99.2 %id)
BE222678 brain, oligodendroglioma .a 2648 to 3205 575 to 18   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 558/559
(99 %)
6 diff
(99.0 %id)
AW769384 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .a 2650 to 3200 553 to 3       551/553
(99 %)
0 diff
(100 %id)
EL952355 eyeball .a 2665 to 3119 1 to 454   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 454/454
(100 %)
4 diff
(99.2 %id)
DB540318 hippocampus .a 2717 to 3205 1 to 489     Submitted on the opposite strand 489/489
(100 %)
2 diff
(99.6 %id)
AI874202 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 2722 to 3114 396 to 4       393/396
(99 %)
0 diff
(100 %id)
DB359055 whole embryo, mainly body .a 2754 to 3205 455 to 1       455/558
(81 %)
11 diff
(98.1 %id)
AA011030 eye, retina .a 2796 to 3198 440 to 33   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 408/410
(99 %)
10 diff
(97.6 %id)
T15661   .a 2832 to 3205 375 to 1       375/375
(100 %)
1 diff
(99.8 %id)
T15475   .a 2873 to 3198 359 to 34   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 326/326
(100 %)
0 diff
(100 %id)
T16063   .a 2882 to 3198 317 to 1       317/317
(100 %)
0 diff
(100 %id)
R40799 whole brain .a 3007 to 3205 214 to 13   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 202/202
(100 %)
8 diff
(96.1 %id)
BM681521 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3082 to 3201 134 to 16   fully sequenced, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 119/119
(100 %)
1 diff
(99.2 %id)
BI762647 pooled colon, kidney, stomach .b 1 to 825 1 to 828   tiling clone,   828/1028
(80 %)
17 diff
(98.4 %id)
TI_57150706   .b 1 to 986 34 to 1016   tiling clone,   983/1061
(92 %)
45 diff
(95.8 %id)
DA357496 subthalamic nucleus .b 838 to 1395 2 to 560   tiling clone, capped   559/559
(100 %)
3 diff
(99.5 %id)
R17356 whole brain .b 886 to 1279 17 to 417       401/421
(95 %)
36 diff
(91.5 %id)
CR746799 brain .b 908 to 1444 1 to 537       537/537
(100 %)
0 diff
(100 %id)
BI488483 brain .b 908 to 1767 1 to 861   fully sequenced,   861/861
(100 %)
4 diff
(99.6 %id)
TI_45378958   .b 908 to 1767 44 to 904   fully sequenced,   861/904
(95 %)
10 diff
(98.9 %id)
R17596 whole brain .b 916 to 1243 1 to 331     Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 331/439
(75 %)
7 diff
(98.5 %id)
H10958 whole brain .b 916 to 1339 1 to 439     Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 439/475
(92 %)
57 diff
(88.0 %id)
AK293501 cerebellum .b 930 to 2193 1 to 1264   tiling clone,   1264/1264
(100 %)
0 diff
(100 %id)
DC302893 cerebellum .b 930 to 1482 1 to 553       553/553
(100 %)
0 diff
(100 %id)
F11325 brain, total brain .b 1009 to 1299 1 to 290       290/290
(100 %)
6 diff
(98.0 %id)
BI489454 brain .b 1737 to 2563 834 to 1   tiling clone, fully sequenced,   834/834
(100 %)
23 diff
(97.3 %id)
TI_45378959   .b 1737 to 2563 834 to 1   fully sequenced,   834/834
(100 %)
23 diff
(97.3 %id)
H10959 whole brain .b 1821 to 2274 476 to 18   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 459/461
(99 %)
13 diff
(97.2 %id)
R42933 whole brain .b 1948 to 2274 345 to 18   tiling clone, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 328/328
(100 %)
2 diff
(99.4 %id)
R42707 whole brain .b 2270 to 2638 391 to 8   tiling clone,   384/396
(96 %)
0 diff
(100 %id)
F08986 brain, total brain .b 2328 to 2636 309 to 1   tiling clone,   309/309
(100 %)
0 diff
(100 %id)
BC021560 Kidney, renal cell adenocarcinoma .c 1 to 1642 1 to 1642 exact tiling clone, available from MGC, AAA   1642/1642
(100 %)
4 diff
(99.8 %id)
BU626191 cell lines, Enchondroma .d 1 to 570 588 to 19 exact tiling clone, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 570/570
(100 %)
0 diff
(100 %id)
DA752520   .e 1 to 564 2 to 565 exact tiling clone, capped   564/564
(100 %)
1 diff
(99.9 %id)
DC368319   .f 1 to 549 1 to 549 exact tiling clone,   549/549
(100 %)
0 diff
(100 %id)
AA326334 brain, cerebellum Gene DBC1, variant not shown         Suspected internal deletion, this clone was ignored    
AK293649 cerebellum Gene DBC1, variant not shown         Suspected internal deletion, this clone was ignored    
BC071702 Brain, fetal, whole pooled Gene DBC1, variant not shown       available from MGC, AAA This clone was ignored    
Z41452 brain, total brain Gene DBC1, variant not shown              
Z45819 brain, total brain Gene DBC1, variant not shown              
BI913772 brain Gene DBC1, variant not shown         This clone was ignored    
TI_57241773   Gene DBC1, variant not shown         This clone was ignored    
DB043850 testis Gene DBC1, variant not shown       capped      
DB338055 testis Gene DBC1, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI