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Gene CYP46A1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
56 supporting clones for gene CYP46A1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BG704256 brain, hippocampus .a 1 to 724 1 to 718   tiling clone,   718/718
(100 %)
14 diff
(98.1 %id)
BC022539 Brain, hippocampus .a 5 to 2181 1 to 2177 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 2177/2178
(99 %)
2 diff
(100.0 %id)
BI552024 brain, hippocampus .a 8 to 804 1 to 802       802/926
(86 %)
14 diff
(98.5 %id)
BQ066937 brain .a 12 to 813 12 to 819       808/1076
(75 %)
32 diff
(97.1 %id)
TI_44171828   .a 13 to 804 84 to 880       797/1004
(79 %)
16 diff
(98.5 %id)
BM548130 brain, hippocampus .a 26 to 679 65 to 728       664/1333
(49 %)
21 diff
(98.5 %id)
CD623076   .a 98 to 596 41 to 525       467/525
(88 %)
19 diff
(96.4 %id)
AF094480 brain .a 106 to 2181 1 to 2076 exact AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 2076/2076
(100 %)
0 diff
(100 %id)
NM_006668.1   .a 106 to 2181 1 to 2076 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 2076/2076
(100 %)
0 diff
(100 %id)
CD623072   .a 108 to 643 1 to 538       538/538
(100 %)
15 diff
(97.3 %id)
CD623074   .a 108 to 737 632 to 7       626/632
(99 %)
3 diff
(99.6 %id)
CD623075   .a 108 to 737 1 to 629       629/636
(98 %)
6 diff
(99.1 %id)
CD623073   .a 111 to 726 626 to 14       613/629
(97 %)
3 diff
(99.6 %id)
CD623077   .a 140 to 737 601 to 5       597/601
(99 %)
2 diff
(99.7 %id)
DA827473 pericardium .a 236 to 795 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA146890 amygdala .a 298 to 873 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
BQ636035 eye, retina .a 470 to 806 1 to 337       337/342
(98 %)
12 diff
(96.5 %id)
R36281 whole brain .a 492 to 949 1 to 460       460/461
(99 %)
16 diff
(96.6 %id)
CV569651 cornea, eye .a 602 to 1130 1 to 529       529/529
(100 %)
0 diff
(100 %id)
CD623080   .a 609 to 1020 422 to 11       412/422
(97 %)
0 diff
(100 %id)
CD623081   .a 609 to 1031 1 to 422       422/423
(99 %)
2 diff
(99.6 %id)
CD623079   .a 677 to 1031 3 to 357       355/358
(99 %)
7 diff
(98.1 %id)
CD623078   .a 683 to 1031 349 to 1       349/357
(97 %)
1 diff
(99.8 %id)
CF456253 peripheral nervous system .a 861 to 1647 13 to 797       785/800
(98 %)
23 diff
(97.2 %id)
H06539 whole brain .a 1143 to 1368 1 to 226       226/226
(100 %)
1 diff
(99.6 %id)
H51951 brain .a 1232 to 1508 1 to 285       285/285
(100 %)
9 diff
(96.9 %id)
BF930893 nervous_tumor .a 1281 to 1567 51 to 337       287/337
(85 %)
7 diff
(98.0 %id)
BM805680 brain, hippocampus .a 1445 to 2085 159 to 805       647/1213
(53 %)
16 diff
(98.7 %id)
DB308235.
matches multiple genes
hippocampus .a 1637 to 2181 548 to 1     also hits gene ZNF708 548/548
(100 %)
4 diff
(99.3 %id)
BX093621 whole brain .a 1695 to 2181 501 to 15   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 487/487
(100 %)
1 diff
(99.8 %id)
AA961615 pooled .a 1759 to 2181 422 to 1       422/422
(100 %)
2 diff
(99.6 %id)
BF952275 nervous_normal .a 1762 to 1916 10 to 165       156/179
(87 %)
5 diff
(97.3 %id)
AA760981 pooled germ cell tumors .a 1788 to 2186 401 to 4       398/401
(99 %)
0 diff
(100 %id)
AW469811 pooled .a 1825 to 2182 358 to 1       358/358
(100 %)
2 diff
(99.5 %id)
H16164 whole brain .a 1841 to 2186 347 to 1   tiling clone,   347/349
(99 %)
9 diff
(97.5 %id)
AI554732 anaplastic oligodendroglioma, brain .a 1860 to 2181 322 to 1       322/322
(100 %)
2 diff
(99.4 %id)
BP388114 pancreatic islet .a 1884 to 2154 1 to 272     Submitted on the opposite strand 272/274
(99 %)
2 diff
(99.3 %id)
R49568 whole brain .a 1908 to 2186 288 to 8       281/288
(97 %)
0 diff
(100 %id)
AK295216 caudate nucleus .b 1 to 1600 1 to 1600 exact tiling clone,   1600/1600
(100 %)
2 diff
(99.9 %id)
DC325965 caudate nucleus .b 1 to 567 1 to 567       567/567
(100 %)
2 diff
(99.7 %id)
BM727874 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 1 to 683 4 to 683   tiling clone, fully sequenced, Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 683/683
(100 %)
2 diff
(99.8 %id)
BU741551 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 622 to 1231 625 to 19   tiling clone, fully sequenced, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 607/607
(100 %)
2 diff
(99.7 %id)
DA248322 brain .d 1 to 589 2 to 590   tiling clone, capped   589/589
(100 %)
8 diff
(98.7 %id)
AK090886 amygdala .d 467 to 2719 1 to 2253 exact tiling clone, available from FLJ,   2253/2253
(100 %)
5 diff
(99.8 %id)
DA152087 amygdala .d 468 to 1031 2 to 565   tiling clone, capped   564/566
(99 %)
4 diff
(99.3 %id)
BU070933 insulinoma, Pancreas .d 1341 to 1987 1 to 647     Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 647/647
(100 %)
5 diff
(99.3 %id)
DB301754 amygdala .d 2168 to 2719 554 to 1       554/554
(100 %)
2 diff
(99.7 %id)
BU070694 insulinoma, Pancreas .d 2324 to 2719 425 to 30   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 396/396
(100 %)
0 diff
(100 %id)
AB209749 brain .e 1 to 6609 1 to 6608 exact tiling clone,   6608/6608
(100 %)
7 diff
(99.9 %id)
DB486114 hypothalamus .e 1726 to 1909 31 to 214       184/295
(62 %)
2 diff
(99.4 %id)
BF967788 brain, hypothalamus .e 3883 to 4507 646 to 13       634/862
(73 %)
23 diff
(97.4 %id)
BX509331   .e 4329 to 5065 1 to 733   tiling clone,   733/733
(100 %)
10 diff
(98.7 %id)
BF942206 medullary carcinoma, thyroid .e 4696 to 4998 302 to 1       302/302
(100 %)
2 diff
(99.4 %id)
AA501787 liposarcoma .e 5121 to 5467 354 to 8       347/361
(96 %)
0 diff
(100 %id)
AA332813 Embryo, 8 weeks .e 5354 to 5672 1 to 324   tiling clone,   324/346
(93 %)
9 diff
(97.4 %id)
BG621222 placenta .e 5467 to 6022 1 to 564   AAA   564/564
(100 %)
13 diff
(97.7 %id)
BC128037 PCR rescued clones .f 1 to 576 586 to 11 exact tiling clone, Submitted on the opposite strand 576/588
(97 %)
4 diff
(99.4 %id)
AL708205 human skeletal muscle .g-u 1 to 363 1 to 360   tiling clone,   360/360
(100 %)
2 diff
(99.5 %id)
DB299260 cerebellum Gene CYP46A1, variant not shown         This clone was ignored    
DA102735 cerebellum Gene CYP46A1, variant not shown       capped This clone was ignored    
CA336955 posterior rhombomeres 5-8 (4 pooled) Gene CYP46A1, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC