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Gene CYP2R1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
158 supporting clones for gene CYP2R1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA694670   .a 1 to 581 4 to 585   tiling clone, capped   584/584
(100 %)
1 diff
(99.9 %id)
BC104909 Liver, PCR rescued clones .a 4 to 1574 1 to 1571 exact     1571/1571
(100 %)
0 diff
(100 %id)
TI_1241109623   .a 4 to 692 46 to 740       695/883
(78 %)
17 diff
(98.1 %id)
TI_1241109625   .a 4 to 1045 47 to 1086       1040/1216
(85 %)
8 diff
(99.4 %id)
TI_1241112985   .a 4 to 1043 50 to 1087       1038/1251
(82 %)
14 diff
(98.9 %id)
BC104907 Liver, PCR rescued clones .a 6 to 1579 1 to 1574 exact     1574/1574
(100 %)
1 diff
(100.0 %id)
TI_1241112983   .a 6 to 1120 49 to 1150       1106/1256
(88 %)
24 diff
(98.1 %id)
AY323817   .a 51 to 1616 1 to 1566 exact tiling clone,   1566/1566
(100 %)
0 diff
(100 %id)
NM_024514.4   .a 51 to 1666 1 to 1616 exact RefSeq, AAA   1616/1616
(100 %)
0 diff
(100 %id)
R11612 liver and spleen .a 318 to 671 1 to 365       365/369
(98 %)
21 diff
(94.4 %id)
T83549 liver and spleen .a 361 to 692 1 to 343       343/403
(85 %)
12 diff
(97.1 %id)
T83719 liver and spleen .a 419 to 581 1 to 163       163/163
(100 %)
1 diff
(99.4 %id)
CA947155 Pancreas, Purified pancreatic islet .a 420 to 953 1 to 534       534/534
(100 %)
10 diff
(98.2 %id)
TI_1241113369   .a 429 to 1579 1206 to 68       1139/1275
(89 %)
16 diff
(98.8 %id)
CK904857 Islets of Langerhans, Pancreas .a 432 to 1028 1 to 597       597/597
(100 %)
0 diff
(100 %id)
BM055218 Islets of Langerhans, Pancreas .a 448 to 1022 1 to 575       575/575
(100 %)
2 diff
(99.7 %id)
TI_1241110497   .a 452 to 1577 1 to 1123       1123/1261
(89 %)
11 diff
(99.2 %id)
TI_1241110495   .a 457 to 1580 1 to 1125       1125/1226
(91 %)
18 diff
(98.6 %id)
TI_1241110897   .a 460 to 1583 9 to 1125       1117/1252
(89 %)
16 diff
(98.8 %id)
TI_1241110899   .a 463 to 1585 8 to 1123       1116/1252
(89 %)
21 diff
(98.4 %id)
TI_1241109627   .a 478 to 1579 1155 to 65       1091/1212
(90 %)
12 diff
(99.1 %id)
T91536 lung .a 521 to 878 1 to 373       373/397
(93 %)
18 diff
(95.5 %id)
BE155715 head_neck .a 589 to 989 405 to 8     Submitted on the opposite strand 398/408
(97 %)
0 diff
(100 %id)
TI_1241109629   .a 633 to 1579 992 to 64       929/1100
(84 %)
26 diff
(97.7 %id)
AW845355 colon .a 663 to 1006 355 to 12       344/356
(96 %)
0 diff
(100 %id)
AA099882 colon, tumor .a 690 to 1191 1 to 505   fully sequenced,   505/505
(100 %)
4 diff
(99.3 %id)
BM818896 stomach .a 833 to 1378 1 to 544       544/544
(100 %)
1 diff
(99.9 %id)
BM818931 stomach .a 833 to 1378 1 to 544       544/544
(100 %)
1 diff
(99.9 %id)
BM823546 stomach .a 833 to 1282 1 to 448       448/448
(100 %)
7 diff
(98.5 %id)
BM825655 stomach .a 833 to 1211 1 to 376       376/376
(100 %)
5 diff
(98.7 %id)
BM830712 stomach .a 833 to 1348 1 to 514       514/514
(100 %)
2 diff
(99.7 %id)
BM823213 stomach .a 834 to 1235 1 to 400       400/400
(100 %)
2 diff
(99.5 %id)
TI_1241110187   .a 866 to 1579 1 to 715       715/1259
(56 %)
3 diff
(99.8 %id)
TI_1241111109   .a 905 to 1579 1 to 675       675/1254
(53 %)
7 diff
(99.5 %id)
BQ309563 breast .a 931 to 1513 585 to 4       582/585
(99 %)
5 diff
(99.2 %id)
AI582291 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 990 to 1663 674 to 1       674/674
(100 %)
3 diff
(99.6 %id)
AI735389 aorta .a 993 to 1663 675 to 4       672/675
(99 %)
0 diff
(100 %id)
DB323234   .a 1122 to 1658 537 to 1       537/537
(100 %)
0 diff
(100 %id)
AA088847 colon, tumor .a 1161 to 1668 510 to 1   tiling clone, fully sequenced,   510/510
(100 %)
7 diff
(98.7 %id)
T91507 lung .a 1233 to 1647 419 to 1       419/419
(100 %)
12 diff
(97.2 %id)
BX440857 brain, fetal brain .b 1 to 1026 4 to 1015   tiling clone,   1015/1065
(95 %)
6 diff
(99.5 %id)
DA924827 small intestine .b 1 to 544 2 to 548   tiling clone, capped   547/547
(100 %)
3 diff
(99.5 %id)
AA663042   .b 107 to 411 297 to 2       296/297
(99 %)
0 diff
(100 %id)
AB371537   .b 179 to 781 603 to 1   tiling clone, Submitted on the opposite strand 603/603
(100 %)
0 diff
(100 %id)
DB033146 testis .b 570 to 1149 2 to 581   capped   580/580
(100 %)
5 diff
(99.2 %id)
DB043646 testis .b 581 to 1148 2 to 572   capped   571/571
(100 %)
3 diff
(99.5 %id)
DB446491 testis .b 585 to 1033 1 to 451       451/451
(100 %)
5 diff
(98.9 %id)
BM925457 brain .b 587 to 1243 69 to 726   tiling clone,   658/1366
(48 %)
12 diff
(99.2 %id)
DB491642 hypothalamus .b 594 to 1010 1 to 419       419/421
(99 %)
30 diff
(92.9 %id)
DA966723 stomach .b 598 to 1149 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA968433 stomach .b 598 to 1148 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
BC052580 Muscle, rhabdomyosarcoma .b 616 to 2494 1 to 1879 exact tiling clone, available from MGC, AAA   1879/1879
(100 %)
2 diff
(99.9 %id)
DB023036 testis .c 1 to 282 2 to 283   tiling clone, capped   282/282
(100 %)
1 diff
(99.7 %id)
DB037519 testis .c 664 to 1230 2 to 568   tiling clone, capped   567/567
(100 %)
0 diff
(100 %id)
BM908185 brain, medulla .c 665 to 1528 18 to 882       865/1095
(78 %)
21 diff
(98.1 %id)
BM782559 stomach .c 871 to 1520 1 to 648   tiling clone,   648/648
(100 %)
3 diff
(99.6 %id)
DB336162 testis .c 1507 to 2058 552 to 1   tiling clone,   552/552
(100 %)
1 diff
(99.9 %id)
AW139576   .c 1592 to 2063 489 to 18   tiling clone, AAA   472/472
(100 %)
0 diff
(100 %id)
CR600246 Placenta Cot 25-normalized .d 1 to 1746 1 to 1746 exact tiling clone,   1746/1746
(100 %)
0 diff
(100 %id)
BX381339 Placenta Cot 25-normalized .d 1 to 1037 1 to 1037       1037/1037
(100 %)
7 diff
(99.4 %id)
BX403392 Placenta Cot 25-normalized .d 1 to 790 1 to 783       783/783
(100 %)
15 diff
(98.1 %id)
DA684902   .d 5 to 542 2 to 540   capped   539/539
(100 %)
1 diff
(99.9 %id)
BE294597 muscle, rhabdomyosarcoma .d 13 to 718 1 to 703       703/705
(99 %)
14 diff
(98.1 %id)
EL733235 mixed .d 109 to 581 1 to 468       468/475
(98 %)
7 diff
(98.6 %id)
DB028127 testis .d 285 to 821 2 to 540   capped   539/539
(100 %)
2 diff
(99.7 %id)
BX381338 Placenta Cot 25-normalized .d 675 to 1744 1065 to 3 S195X     1063/1069
(99 %)
7 diff
(99.4 %id)
CN276720 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 817 to 1480 1 to 664       664/667
(99 %)
1 diff
(99.9 %id)
DB322875   .d 1182 to 1772 591 to 1   tiling clone,   591/591
(100 %)
0 diff
(100 %id)
DR005601 Prostate .e 1 to 634 1 to 632   tiling clone,   632/632
(100 %)
2 diff
(99.7 %id)
AU253802 neuroblastoma .e 112 to 759 1 to 648   tiling clone,   648/648
(100 %)
4 diff
(99.4 %id)
BU601761 mixed (pool of 40 RNAs) .f 1 to 517 1 to 539   tiling clone,   539/969
(55 %)
41 diff
(95.8 %id)
BU601762 mixed (pool of 40 RNAs) .f 1 to 626 1 to 644   tiling clone,   644/910
(70 %)
40 diff
(95.7 %id)
BC111070 Brain, adult, 6 pooled whole brains .f 627 to 2291 1 to 1665 exact tiling clone, AAA   1665/1665
(100 %)
0 diff
(100 %id)
CD518361 White Matter .f 633 to 1405 1 to 783       783/816
(95 %)
25 diff
(97.0 %id)
DB492465 hypothalamus .f 635 to 1099 1 to 472       472/473
(99 %)
32 diff
(93.3 %id)
BG826721 muscle, rhabdomyosarcoma .f 648 to 1396 1 to 751   available from MGC,   751/752
(99 %)
12 diff
(98.5 %id)
DA692255   .f 661 to 1114 2 to 455   capped   454/454
(100 %)
0 diff
(100 %id)
BY795282 eye .f 1592 to 2190 1 to 599       599/601
(99 %)
1 diff
(99.9 %id)
BI829406 brain, medulla .g 1 to 271 1 to 270 G11E T12R L14* tiling clone,   725/734
(98 %)
20 diff
(97.3 %id)
TI_57176846   .g 1 to 271 66 to 335 G11E T12R L14*     725/799
(90 %)
25 diff
(96.9 %id)
TI_59383672   .h 1 to 763 53 to 816   tiling clone,   764/765
(99 %)
14 diff
(98.2 %id)
BM008192 Spleen .h 5 to 763 1 to 760       760/761
(99 %)
14 diff
(98.2 %id)
BC084557 Spleen .h 6 to 1180 1 to 1175   tiling clone, AAA   1175/1175
(100 %)
0 diff
(100 %id)
BQ706528 Spleen .h 9 to 912 3 to 911       909/911
(99 %)
6 diff
(99.4 %id)
BX477577   .h 46 to 464 1 to 419       419/419
(100 %)
6 diff
(98.6 %id)
AK312019 testis .h 58 to 396 1 to 339       339/339
(100 %)
6 diff
(98.3 %id)
BP220157 colon .h 74 to 658 1 to 585       585/585
(100 %)
26 diff
(95.6 %id)
BX359739 Placenta Cot 25-normalized .h 81 to 1113 1 to 1019   AAA   1019/1071
(95 %)
17 diff
(98.5 %id)
BI548611 brain, hippocampus .h 86 to 907 1 to 814       814/858
(94 %)
30 diff
(96.6 %id)
DB037104 testis .h 87 to 657 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
TI_44167114   .h 91 to 907 89 to 897       809/941
(85 %)
26 diff
(97.3 %id)
BQ181580 Knee, Osteoarthritic Cartilage .h 609 to 1198 590 to 1       590/592
(99 %)
22 diff
(96.3 %id)
AW850537 colon .h 991 to 1236 261 to 15   tiling clone,   247/261
(94 %)
0 diff
(100 %id)
BU161971 eye, retinoblastoma .h 1214 to 2089 19 to 893 K173X K182Q T197N E198* tiling clone,   875/908
(96 %)
16 diff
(98.3 %id)
CB241733 Human Lung Epithelial cells, lung .i 1 to 363 1 to 363   tiling clone, AAA Submitted on the opposite strand 363/372
(97 %)
4 diff
(99.0 %id)
N36539 melanocyte .i 59 to 374 1 to 317       317/320
(99 %)
3 diff
(99.1 %id)
AA234841 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .i 59 to 341 1 to 283       283/283
(100 %)
3 diff
(99.0 %id)
AA449583   .i 228 to 552 11 to 335   fully sequenced,   325/335
(97 %)
5 diff
(98.6 %id)
BX117854   .i 230 to 729 59 to 558       500/559
(89 %)
5 diff
(99.2 %id)
TI_149311048   .i 261 to 1009 872 to 129 A155V AAA   744/935
(79 %)
11 diff
(98.9 %id)
TI_149313547   .i 280 to 1007 814 to 92 exact tiling clone, AAA   723/941
(76 %)
8 diff
(99.2 %id)
BE217836 carcinoid, lung .i 328 to 896 1 to 569     Submitted on the opposite strand 569/569
(100 %)
1 diff
(99.9 %id)
CB305439 lung, Primary Lung Cystic Fibrosis EpithelialCells .i 353 to 1007 667 to 13 exact AAA   655/655
(100 %)
0 diff
(100 %id)
BM724854 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .i 393 to 1002 1 to 610 exact fully sequenced, AAA   610/610
(100 %)
1 diff
(99.9 %id)
AI935526 Kidney .i 396 to 993 600 to 3 K14R M115L     598/600
(99 %)
1 diff
(99.9 %id)
AW771485 Kidney .i 396 to 1014 631 to 13 P3L T18X AAA   619/619
(100 %)
5 diff
(99.2 %id)
AI742255 pooled .i 408 to 1012 605 to 1 M15C L22X     605/605
(100 %)
6 diff
(99.1 %id)
CK430531 eye, lacrimal gland .i 410 to 1010 1 to 601 exact     601/601
(100 %)
0 diff
(100 %id)
CK904856 Islets of Langerhans, Pancreas .i 411 to 1006 596 to 1 exact     596/596
(100 %)
0 diff
(100 %id)
AA058765 uterus .i 435 to 991 1 to 556       556/560
(99 %)
2 diff
(99.7 %id)
AA115448 uterus .i 435 to 754 1 to 321   fully sequenced,   321/321
(100 %)
1 diff
(99.7 %id)
BE221463 malignant melanoma, metastatic to lymphnode, skin .i 452 to 1014 582 to 20   AAA   563/565
(99 %)
7 diff
(98.8 %id)
BM977264 lung, Primary Lung Epithelial Cells .i 452 to 1009 568 to 11   AAA   558/558
(100 %)
4 diff
(99.3 %id)
AI873300 pooled .i 453 to 965 513 to 1       513/513
(100 %)
0 diff
(100 %id)
AI818612 adenocarcinoma, Pancreas .i 453 to 1001 564 to 16   AAA   549/549
(100 %)
2 diff
(99.7 %id)
AI805775 carcinoid, lung .i 455 to 1008 552 to 3       550/552
(99 %)
8 diff
(98.6 %id)
AI431661 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .i 462 to 1007 550 to 4       547/553
(98 %)
2 diff
(99.7 %id)
AW512137 lymph node, lymphoma, follicular mixed small and largecell .i 462 to 894 433 to 1       433/436
(99 %)
10 diff
(97.8 %id)
BM054966 Islets of Langerhans, Pancreas .i 462 to 1001 541 to 1       541/544
(99 %)
9 diff
(98.4 %id)
AW138676   .i 476 to 1009 551 to 18   AAA   534/534
(100 %)
0 diff
(100 %id)
AA732048 germinal center B cell .i 480 to 1001 537 to 16   AAA   522/522
(100 %)
10 diff
(98.1 %id)
AI280096 pooled .i 501 to 1012 512 to 1       512/512
(100 %)
1 diff
(99.9 %id)
AA449325   .i 522 to 1014 505 to 13   tiling clone, fully sequenced, AAA   493/493
(100 %)
1 diff
(99.8 %id)
AI221745 pooled .i 534 to 1020 490 to 5       486/490
(99 %)
0 diff
(100 %id)
AW511264 pooled .i 549 to 1005 457 to 1       457/457
(100 %)
3 diff
(99.4 %id)
BF869225 lung_tumor .i 553 to 929 1 to 377       377/383
(98 %)
1 diff
(99.8 %id)
BF869229 lung_tumor .i 553 to 929 383 to 7     Submitted on the opposite strand 377/383
(98 %)
1 diff
(99.8 %id)
BF871405 lung_tumor .i 553 to 868 1 to 316       316/316
(100 %)
9 diff
(97.2 %id)
BU741483 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .i 573 to 1009 455 to 19   fully sequenced, AAA   437/437
(100 %)
1 diff
(99.8 %id)
AI874135 serous papillary carcinoma, high grade, 2pooled tumors, uterus .i 575 to 1008 436 to 1       436/436
(100 %)
5 diff
(98.9 %id)
AA235247 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .i 579 to 1007 452 to 24   AAA   429/431
(99 %)
3 diff
(99.4 %id)
BP397202 pancreatic islet .i 586 to 1009 1 to 425     Submitted on the opposite strand 425/425
(100 %)
3 diff
(99.3 %id)
BF195757 Kidney .i 605 to 1016 413 to 2       412/413
(99 %)
0 diff
(100 %id)
DB525867 testis .i 608 to 1009 1 to 402     Submitted on the opposite strand 402/402
(100 %)
0 diff
(100 %id)
AI765161 2 pooled tumors (clear cell type), Kidney .i 621 to 1012 397 to 5       393/397
(98 %)
0 diff
(100 %id)
AA115449 uterus .i 693 to 1014 322 to 1   fully sequenced,   322/322
(100 %)
0 diff
(100 %id)
BY799650 eye .j-u 1 to 619 1 to 621   tiling clone,   621/621
(100 %)
3 diff
(99.6 %id)
DA493053 brain .j-u 326 to 908 2 to 585   tiling clone, capped   584/584
(100 %)
1 diff
(99.9 %id)
DA434920 tongue, tumor tissue .j-u 679 to 1189 2 to 512 exact tiling clone, capped   511/511
(100 %)
0 diff
(100 %id)
BI547775 brain, hippocampus .k 1 to 690 1 to 690 P2A K23Q R26E L27T I28H ... tiling clone,   688/691
(99 %)
13 diff
(98.2 %id)
TI_44169136   .k 6 to 690 88 to 772 P2A K23Q R26E L27T I28H ...     683/773
(88 %)
11 diff
(98.6 %id)
DT217427 brain .l-u 1 to 630 1 to 630 H2P Y26C tiling clone,   630/630
(100 %)
5 diff
(99.3 %id)
BP307965 brain .m 1 to 581 1 to 581 exact tiling clone,   581/583
(99 %)
2 diff
(99.7 %id)
AI376519 pooled .n 1 to 484 484 to 1 exact tiling clone,   484/485
(99 %)
1 diff
(99.8 %id)
DB562241 hypothalamus .n 37 to 482 1 to 446     Submitted on the opposite strand 446/446
(100 %)
4 diff
(99.2 %id)
AW182140 pooled .n 95 to 481 391 to 3       389/426
(91 %)
5 diff
(98.9 %id)
AI825022 pooled germ cell tumors .n 109 to 458 350 to 1       350/352
(99 %)
0 diff
(100 %id)
EC457578 Prostate .n 136 to 248 1 to 111       111/111
(100 %)
10 diff
(91.0 %id)
DB511698 testis .n 183 to 481 26 to 326     Submitted on the opposite strand 301/326
(92 %)
6 diff
(98.2 %id)
AI708265 aorta .n 232 to 474 241 to 1       241/241
(100 %)
3 diff
(98.8 %id)
CF142289 CNCAP(3)T-225 cell line, Prostate .n 241 to 482 276 to 35   tiling clone, AAA Submitted on the opposite strand 242/254
(95 %)
1 diff
(99.7 %id)
AI992346 Prostate .n 242 to 427 186 to 1       186/186
(100 %)
1 diff
(99.5 %id)
U38433   .n 304 to 482 1 to 181       181/182
(99 %)
7 diff
(96.2 %id)
FN096046 breast carcinoma .n 327 to 383 1 to 57       57/58
(98 %)
1 diff
(98.3 %id)
DB460456 testis .o 1 to 483 1 to 483 exact tiling clone,   483/483
(100 %)
1 diff
(99.8 %id)
AV695349 hepatocellular carcinoma Gene CYP2R1, variant not shown         This clone was ignored    
AV699446 hepatocellular carcinoma Gene CYP2R1, variant not shown         This clone was ignored    
AV695158 hepatocellular carcinoma Gene CYP2R1, variant not shown         This clone was ignored    
AV684453 hepatocellular carcinoma Gene CYP2R1, variant not shown         This clone was ignored    
AV700558 hepatocellular carcinoma Gene CYP2R1, variant not shown       AAA This clone was ignored    
AV685337 hepatocellular carcinoma Gene CYP2R1, variant not shown         This clone was ignored    
AV699603 hepatocellular carcinoma Gene CYP2R1, variant not shown         This clone was ignored    
AV698746 hepatocellular carcinoma Gene CYP2R1, variant not shown         Suspected internal deletion, this clone was ignored    
BQ332833 lung_tumor Gene CYP2R1, variant not shown         This clone was ignored    
CN277446 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 Gene CYP2R1, variant not shown              
DB119068 thymus Gene CYP2R1, variant not shown       capped      
DB343843 thymus Gene CYP2R1, variant not shown              
AK092584 Prostate Gene CYP2R1, variant not shown       available from FLJ, This clone was ignored    
AX747612   Gene CYP2R1, variant not shown         This clone was ignored    
DB329815 Prostate Gene CYP2R1, variant not shown         This clone was ignored    
DA869337 Prostate Gene CYP2R1, variant not shown       capped This clone was ignored    
AA749068 germinal center B cell Gene CYP2R1, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k, .l-u, .m, .n, .o Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC