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Gene CYP1A1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
103 supporting clones for gene CYP1A1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA693879   .a 1 to 574 2 to 575   tiling clone, capped   574/574
(100 %)
0 diff
(100 %id)
BP351478   .a 62 to 635 1 to 578       578/582
(99 %)
20 diff
(96.6 %id)
DA867954 Prostate .a 63 to 575 2 to 515   capped   514/514
(100 %)
1 diff
(99.9 %id)
BI600653 brain, hypothalamus .a 77 to 834 1 to 764       764/764
(100 %)
19 diff
(97.6 %id)
DB201427 trachea .a 78 to 655 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
AL598760   .a 81 to 766 1 to 692       692/693
(99 %)
7 diff
(99.0 %id)
AL598658   .a 81 to 562 1 to 482       482/482
(100 %)
2 diff
(99.6 %id)
AK223108   .a 82 to 1889 1 to 1808 G45D E166G I326T N415D M498V     1808/1808
(100 %)
5 diff
(99.8 %id)
AL600770   .a 82 to 573 1 to 492       492/492
(100 %)
0 diff
(100 %id)
AL600881   .a 82 to 573 1 to 492       492/492
(100 %)
0 diff
(100 %id)
AL600919   .a 82 to 566 1 to 485       485/485
(100 %)
0 diff
(100 %id)
BP273049   .a 82 to 650 1 to 569       569/569
(100 %)
3 diff
(99.5 %id)
DB209059 trachea .a 83 to 601 2 to 520   capped   519/519
(100 %)
0 diff
(100 %id)
DB211722 trachea .a 83 to 632 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
TI_45212828   .a 85 to 834 99 to 854       756/854
(88 %)
18 diff
(97.9 %id)
DR003890 Liver .a 90 to 765 1 to 677       677/677
(100 %)
3 diff
(99.6 %id)
BP353358   .a 112 to 693 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BC023019 Cervix, carcinoma .a 118 to 2683 1 to 2566 exact tiling clone, available from MGC, AAA   2566/2566
(100 %)
0 diff
(100 %id)
BI254564 cervical carcinoma cell line, cervix .a 119 to 765 1 to 644       644/644
(100 %)
7 diff
(99.0 %id)
NM_000499.3   .b 1 to 2604 5 to 2608 exact RefSeq,   2608/2608
(100 %)
0 diff
(100 %id)
DB263925 uterus .b 1 to 595 2 to 596   tiling clone, capped   595/595
(100 %)
1 diff
(99.9 %id)
DB207108 trachea .b 4 to 575 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DB255575 uterus .b 4 to 575 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
AK223113   .b 5 to 1855 1 to 1851 G45D tiling clone,   1851/1851
(100 %)
2 diff
(99.9 %id)
AK313880 trachea .b 5 to 1657 1 to 1653 exact     1653/1653
(100 %)
0 diff
(100 %id)
BP273549   .b 5 to 561 1 to 557       557/557
(100 %)
4 diff
(99.3 %id)
AU100035   .b 5 to 304 1 to 300       300/300
(100 %)
14 diff
(95.4 %id)
DB197275 trachea .b 5 to 576 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
DB199237 trachea .b 6 to 592 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA643019 Liver .b 13 to 597 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
K03191   .b 33 to 2597 1 to 2565 I26M D235E I462V tiling clone,   2565/2565
(100 %)
4 diff
(99.9 %id)
TI_1948135939   .b 114 to 733 124 to 750       627/1306
(48 %)
33 diff
(97.5 %id)
TI_1948135940   .b 114 to 948 136 to 974       839/1369
(61 %)
13 diff
(99.1 %id)
TI_1948136645   .b 114 to 693 122 to 703       582/1451
(40 %)
23 diff
(98.5 %id)
TI_1948136646   .b 114 to 942 127 to 964       838/1424
(58 %)
23 diff
(98.4 %id)
TI_1948135583   .b 118 to 732 125 to 744       620/1290
(48 %)
21 diff
(98.4 %id)
TI_1948135584   .b 118 to 1071 132 to 1089       958/1352
(70 %)
27 diff
(98.1 %id)
TI_1948136296   .b 118 to 825 126 to 840       715/1256
(56 %)
19 diff
(98.5 %id)
TI_1948136297   .b 118 to 1042 132 to 1060       929/1394
(66 %)
32 diff
(97.8 %id)
CV029432 mixed .b 119 to 757 1 to 639       639/639
(100 %)
6 diff
(99.1 %id)
DB196963 trachea .b 173 to 752 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
BQ878741 dorsal root ganglia .b 302 to 1244 1 to 947       947/949
(99 %)
8 diff
(99.2 %id)
TI_1948136298   .b 593 to 1656 1187 to 125       1063/1365
(77 %)
70 diff
(94.9 %id)
T29024 blood, white blood cells .b 603 to 981 1 to 380       380/381
(99 %)
5 diff
(98.7 %id)
AW949660   .b 605 to 1364 1 to 765       765/766
(99 %)
14 diff
(98.2 %id)
AW949738   .b 605 to 976 1 to 373       373/374
(99 %)
23 diff
(93.9 %id)
DA563518 heart .b 613 to 1097 2 to 486   capped   485/485
(100 %)
0 diff
(100 %id)
TI_1948135585   .b 631 to 1656 1161 to 126       1036/1308
(79 %)
39 diff
(97.1 %id)
TI_1948136647   .b 656 to 1656 1133 to 126       1008/1361
(74 %)
44 diff
(96.8 %id)
TI_1948135941   .b 715 to 1656 1056 to 126       931/1337
(69 %)
29 diff
(97.9 %id)
TI_1948136299   .b 842 to 1656 955 to 124       832/1154
(72 %)
22 diff
(98.1 %id)
BM551795 melanotic melanoma, skin .b 849 to 1546 1 to 700       700/1060
(66 %)
24 diff
(97.8 %id)
TI_1948135586   .b 941 to 1656 844 to 125       720/1156
(62 %)
18 diff
(98.5 %id)
AF040259   .b 960 to 1392 1 to 433       433/433
(100 %)
1 diff
(99.8 %id)
M12079   .b 1001 to 1572 1 to 572       572/572
(100 %)
1 diff
(99.9 %id)
TI_1948135942   .b 1070 to 1656 714 to 125       590/1170
(50 %)
14 diff
(98.9 %id)
TI_1948136648   .b 1159 to 1656 632 to 124       507/1253
(40 %)
28 diff
(97.8 %id)
AW996050 breast_normal .b 1251 to 1387 141 to 6     Submitted on the opposite strand 136/141
(96 %)
1 diff
(99.3 %id)
AV698997 hepatocellular carcinoma .b 1272 to 1670 1 to 394       394/394
(100 %)
5 diff
(98.8 %id)
H23070 whole brain .b 1303 to 1532 1 to 230       230/230
(100 %)
4 diff
(98.3 %id)
BE547642 cervical carcinoma cell line, cervix .b 1311 to 2018 1 to 703       703/840
(83 %)
18 diff
(97.9 %id)
R14112 whole brain .b 1338 to 1648 1 to 319       319/319
(100 %)
8 diff
(97.5 %id)
R39982 whole brain .b 2405 to 2585 191 to 11       181/191
(94 %)
0 diff
(100 %id)
H24348 whole brain .b 2463 to 2592 130 to 1       130/130
(100 %)
2 diff
(98.5 %id)
AK310810 trachea .c 1 to 2114 2 to 2115 exact tiling clone,   2114/2115
(99 %)
7 diff
(99.7 %id)
CN297633 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 1496 to 2056 1 to 561       561/561
(100 %)
1 diff
(99.9 %id)
BU941041 mixed (pool of 40 RNAs) .c 1585 to 2342 1 to 772       772/804
(96 %)
25 diff
(96.9 %id)
BG547903 lung .c 1648 to 2358 1 to 712       712/712
(100 %)
10 diff
(98.6 %id)
AA426553 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1871 to 2287 1 to 411   fully sequenced,   411/411
(100 %)
7 diff
(98.3 %id)
AF040258   .c 1883 to 2028 1 to 146       146/146
(100 %)
2 diff
(98.7 %id)
CR737482   .c 1941 to 2534 1 to 595       595/595
(100 %)
1 diff
(99.9 %id)
CN297634 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 1942 to 2618 1 to 677   tiling clone,   677/677
(100 %)
0 diff
(100 %id)
CB163693 Liver .c 1960 to 2404 1 to 446       446/446
(100 %)
2 diff
(99.6 %id)
CA426401 cell lines, Chondrosarcoma .c 2003 to 2720 734 to 17   AAA   718/718
(100 %)
3 diff
(99.6 %id)
BQ005861 Chondrosarcoma, Left Pubic Bone .c 2063 to 2720 674 to 17   AAA   658/658
(100 %)
0 diff
(100 %id)
CA439920 lung, Lung Focal Fibrosis .c 2092 to 2727 654 to 19   AAA   636/636
(100 %)
1 diff
(99.9 %id)
CA423835 cell lines, Chondrosarcoma .c 2106 to 2727 640 to 19   tiling clone, AAA   622/622
(100 %)
0 diff
(100 %id)
AW073902 2 pooled high-grade transitional celltumors, genitourinary tract .c 2125 to 2720 617 to 24   AAA   594/594
(100 %)
10 diff
(98.4 %id)
BF437793 Prostate .c 2177 to 2731 555 to 1       555/555
(100 %)
1 diff
(99.9 %id)
BU620769 cell lines, Chondrosarcoma .c 2181 to 2727 565 to 19   AAA   547/547
(100 %)
0 diff
(100 %id)
AI745534 Prostate .c 2201 to 2719 528 to 10       519/528
(98 %)
0 diff
(100 %id)
AI826908 normal prostate, Prostate .c 2201 to 2727 527 to 1       527/527
(100 %)
8 diff
(98.5 %id)
AI184739   .c 2242 to 2723 483 to 3       481/490
(98 %)
0 diff
(100 %id)
AA418907 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2257 to 2725 465 to 1   fully sequenced,   465/465
(100 %)
4 diff
(99.2 %id)
AW451941   .c 2289 to 2727 456 to 18   AAA   439/439
(100 %)
0 diff
(100 %id)
BF593495 Prostate .c 2291 to 2726 454 to 19   AAA   436/436
(100 %)
2 diff
(99.6 %id)
AI417887 Prostate .c 2348 to 2720 390 to 18   AAA   373/373
(100 %)
0 diff
(100 %id)
W74298 Pancreas, pancreatic islet .c 2375 to 2718 350 to 1     Submitted on the opposite strand 350/350
(100 %)
7 diff
(98.0 %id)
AW992910 breast_normal .c 2376 to 2535 161 to 1     Submitted on the opposite strand 161/161
(100 %)
4 diff
(97.6 %id)
AW291515   .c 2392 to 2727 353 to 18   AAA   336/336
(100 %)
1 diff
(99.8 %id)
BE000345 breast_normal .c 2535 to 2678 144 to 1     Submitted on the opposite strand 144/144
(100 %)
1 diff
(99.4 %id)
BU182605 melanotic melanoma, skin .d 1 to 888 1 to 888 Q154P R163M F186L S190C T195S ... tiling clone,   888/890
(99 %)
27 diff
(97.0 %id)
BF762142 colon_est .d 325 to 652 328 to 1   tiling clone, Submitted on the opposite strand 328/403
(81 %)
9 diff
(97.8 %id)
BE815014 breast_normal .d 326 to 431 108 to 3       106/108
(98 %)
0 diff
(100 %id)
AM233517 lung .e 1 to 796 1 to 796 exact tiling clone,   796/796
(100 %)
0 diff
(100 %id)
AM236047 lung .f 1 to 978 1 to 978 exact tiling clone,   978/978
(100 %)
1 diff
(99.9 %id)
AM233518 lung .g 1 to 988 1 to 988 exact tiling clone,   988/988
(100 %)
0 diff
(100 %id)
AM233519 blood .h 1 to 1192 1 to 1192 exact tiling clone,   1192/1192
(100 %)
0 diff
(100 %id)
AM233520 blood .i 1 to 1544 1 to 1542 I21M E22S H23T C24S Q25G ... tiling clone,   1542/1542
(100 %)
2 diff
(99.9 %id)
CB265483 adipose .j-u 1 to 508 1 to 509 exact tiling clone,   509/509
(100 %)
1 diff
(99.9 %id)
AY871801 brain Gene CYP1A1, variant not shown         This clone was ignored    
CB267342 adipose Gene CYP1A1, variant not shown         Suspected internal deletion, this clone was ignored    
AV656441 corresponding non cancerous liver tissue Gene CYP1A1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
DB206284 trachea Gene CYP1A1, variant not shown       capped This clone was ignored    
AM236046 blood Gene CYP1A1, variant not shown         Suspected internal deletion, this clone was ignored    
AY310359   Gene CYP1A1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI