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Gene CYFIP1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
595 supporting clones for gene CYFIP1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CV357437 stomach .a 1 to 426 1 to 425   tiling clone,   425/425
(100 %)
5 diff
(98.9 %id)
DB071967 testis .a 174 to 710 2 to 538   tiling clone, capped   537/538
(99 %)
2 diff
(99.7 %id)
DB340271 testis .a 4162 to 4710 550 to 1   tiling clone,   550/550
(100 %)
1 diff
(99.9 %id)
AY763578   .b 48 to 4496 67 to 4515 exact tiling clone,   4515/4515
(100 %)
2 diff
(100.0 %id)
DA460308 tongue, tumor tissue .b 48 to 528 83 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
BQ278194 ovary, teratocarcinoma, cell line .b 48 to 750 67 to 771       771/1085
(71 %)
14 diff
(98.8 %id)
DB237943 trachea .c -11 to 576 2 to 589   capped   588/588
(100 %)
3 diff
(99.5 %id)
CN258425 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c -10 to 553 1 to 563       563/563
(100 %)
3 diff
(99.5 %id)
DA185984 amygdala .c -9 to 535 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA195141 amygdala .c -9 to 533 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA318489 hippocampus .c -9 to 551 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA323637 hippocampus .c -9 to 548 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA330122 hippocampus .c -9 to 547 2 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
DA504976 brain .c -9 to 550 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA524019 brain .c -9 to 557 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA722745   .c -9 to 572 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA725370   .c -9 to 539 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA809343 brain .c -9 to 581 2 to 593   capped   592/592
(100 %)
1 diff
(99.9 %id)
DA811481 brain .c -9 to 540 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA860512 placenta .c -9 to 515 2 to 526   capped   525/525
(100 %)
0 diff
(100 %id)
DB095589 testis .c -9 to 554 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB287488 uterus .c -9 to 560 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DB288444 uterus .c -9 to 550 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DB291259 uterus .c -9 to 577 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA461576 tongue, tumor tissue .c 1 to 576 10 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
BQ431860 melanotic melanoma, skin .c 1 to 855 8 to 867       867/881
(98 %)
10 diff
(98.9 %id)
DA336883 hippocampus .c 1 to 590 8 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
BM800834 melanotic melanoma, skin .c 1 to 906 27 to 940       917/1065
(86 %)
25 diff
(97.7 %id)
BX463739 brain, fetal brain .c 1 to 1035 3 to 1026       1026/1026
(100 %)
12 diff
(98.9 %id)
D38549   .c 1 to 4377 3 to 4379 exact tiling clone, available from KIAA,   4379/4379
(100 %)
2 diff
(100.0 %id)
BY796089 eye .c 1 to 607 2 to 607       607/607
(100 %)
1 diff
(99.9 %id)
DR001587 fetal brain .c 1 to 731 10 to 737       729/737
(98 %)
9 diff
(98.8 %id)
DA110061 cerebellum .c 1 to 558 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
BX440211 brain, fetal brain .c 1 to 623 1 to 623       623/623
(100 %)
0 diff
(100 %id)
BC005097 Brain, neuroblastoma .c 2 to 4377 1 to 4376 exact tiling clone, available from MGC, AAA   4376/4376
(100 %)
2 diff
(100.0 %id)
CV815178 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 2 to 719 1 to 718       718/731
(98 %)
8 diff
(99.0 %id)
DB159923 thymus .c 5 to 596 9 to 601   capped   593/594
(99 %)
2 diff
(99.7 %id)
CN481660 eye .c 16 to 620 1 to 605       605/605
(100 %)
0 diff
(100 %id)
DA195211 amygdala .c 20 to 579 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
CD109748 Human Placenta, placenta .c 21 to 775 29 to 784       756/784
(96 %)
8 diff
(99.0 %id)
DA719790   .c 22 to 597 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA722570   .c 22 to 592 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB234785 trachea .c 22 to 578 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA313874 hippocampus .c 25 to 555 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
DA721952   .c 31 to 598 2 to 569   capped   568/569
(99 %)
1 diff
(99.9 %id)
DB092061 testis .c 31 to 574 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
CN258413 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 40 to 566 1 to 527       527/527
(100 %)
0 diff
(100 %id)
AK291604 placenta .c 48 to 3979 83 to 4014 exact     4014/4014
(100 %)
2 diff
(100.0 %id)
AY763577   .c 48 to 4377 120 to 4449 exact     4449/4449
(100 %)
2 diff
(100.0 %id)
DA053487   .c 48 to 570 85 to 607   capped   606/606
(100 %)
0 diff
(100 %id)
DA105207 cerebellum .c 48 to 527 85 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA106764 cerebellum .c 48 to 527 85 to 564   capped   563/563
(100 %)
3 diff
(99.5 %id)
DA143925 amygdala .c 48 to 544 78 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA182899 amygdala .c 48 to 517 97 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA184490 amygdala .c 48 to 464 64 to 480   capped   479/479
(100 %)
0 diff
(100 %id)
DA189847 amygdala .c 48 to 566 64 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DA193325 amygdala .c 48 to 542 97 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DA223539 brain .c 48 to 524 85 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA240000 brain .c 48 to 560 63 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA244412 brain .c 48 to 527 105 to 584   capped   583/584
(99 %)
1 diff
(99.9 %id)
DA249345 brain .c 48 to 584 64 to 601   capped   600/600
(100 %)
3 diff
(99.5 %id)
DA291222 hippocampus .c 48 to 547 87 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA300785 hippocampus .c 48 to 528 99 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA315417 hippocampus .c 48 to 508 85 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA316554 hippocampus .c 48 to 532 63 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA318573 hippocampus .c 48 to 535 83 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA319239 hippocampus .c 48 to 529 83 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA322187 hippocampus .c 48 to 561 132 to 645   capped   603/644
(93 %)
7 diff
(99.0 %id)
DA330328 hippocampus .c 48 to 501 85 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DA331075 hippocampus .c 48 to 504 100 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
DA331915 hippocampus .c 48 to 576 64 to 593   capped   592/592
(100 %)
3 diff
(99.5 %id)
DA333980 hippocampus .c 48 to 539 83 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA336509 hippocampus .c 48 to 561 83 to 596   capped   595/595
(100 %)
1 diff
(99.9 %id)
DA337058 hippocampus .c 48 to 540 85 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
DA340485 hippocampus .c 48 to 537 106 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DA398263 thalamus .c 48 to 519 85 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
DA409664 thalamus .c 48 to 508 97 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA417297 thalamus .c 48 to 538 64 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA418874 thalamus .c 48 to 505 116 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA419231 cord Blood .c 48 to 529 83 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
BX366434 Neuroblastoma Cot 25-normalized .c 48 to 949 83 to 979       979/982
(99 %)
16 diff
(98.4 %id)
BX356445 Placenta Cot 25-normalized .c 48 to 884 78 to 910       910/968
(94 %)
5 diff
(99.5 %id)
BX342176   .c 48 to 943 78 to 969       969/973
(99 %)
9 diff
(99.1 %id)
DA440852 tongue, tumor tissue .c 48 to 581 83 to 616   capped   615/615
(100 %)
0 diff
(100 %id)
DA448650 tongue, tumor tissue .c 48 to 519 85 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA455485 tongue, tumor tissue .c 48 to 531 87 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA455540 tongue, tumor tissue .c 48 to 554 64 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA456070 tongue, tumor tissue .c 48 to 432 83 to 467   capped   466/466
(100 %)
0 diff
(100 %id)
DA458190 tongue, tumor tissue .c 48 to 549 83 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA458909 tongue, tumor tissue .c 48 to 485 116 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA459143 tongue, tumor tissue .c 48 to 519 108 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA460862 tongue, tumor tissue .c 48 to 515 97 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA461479 tongue, tumor tissue .c 48 to 531 85 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA461591 tongue, tumor tissue .c 48 to 544 83 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA502574 brain .c 48 to 507 114 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
BF979687 testis .c 48 to 719 124 to 794       795/1052
(75 %)
39 diff
(96.3 %id)
BG324552 Kidney, renal cell adenocarcinoma .c 48 to 600 69 to 621       621/621
(100 %)
3 diff
(99.6 %id)
BI560429 testis .c 48 to 679 104 to 738       738/738
(100 %)
15 diff
(98.0 %id)
BM800720 melanotic melanoma, skin .c 48 to 689 80 to 722       722/1126
(64 %)
20 diff
(98.3 %id)
BU188390 melanotic melanoma, skin .c 48 to 844 74 to 871       871/872
(99 %)
9 diff
(99.0 %id)
TI_44349063   .c 48 to 679 225 to 859       739/859
(86 %)
17 diff
(98.1 %id)
BP278878   .c 48 to 537 97 to 587       587/587
(100 %)
3 diff
(99.5 %id)
BP284458 bone marrow .c 48 to 572 64 to 588       588/588
(100 %)
2 diff
(99.7 %id)
BP285665 lung .c 48 to 547 83 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP286026 lung .c 48 to 533 97 to 582       582/582
(100 %)
2 diff
(99.7 %id)
BP286943 lung .c 48 to 531 99 to 582       582/582
(100 %)
0 diff
(100 %id)
NM_014608.2   .c 48 to 4377 99 to 4428 exact RefSeq, AAA   4428/4428
(100 %)
0 diff
(100 %id)
DA720998   .c 48 to 513 99 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DA725536   .c 48 to 488 116 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA754719   .c 48 to 463 83 to 498   capped   497/497
(100 %)
0 diff
(100 %id)
DA756545   .c 48 to 547 64 to 564   capped   563/563
(100 %)
3 diff
(99.5 %id)
DA757556   .c 48 to 538 83 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
DA797811 brain .c 48 to 543 64 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA806487 brain .c 48 to 529 83 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA808633 brain .c 48 to 544 63 to 559   capped   558/559
(99 %)
4 diff
(99.3 %id)
DA809640 brain .c 48 to 529 67 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA809728 brain .c 48 to 515 99 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BP313017 mammary gland .c 48 to 546 84 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP314773 mammary gland .c 48 to 535 95 to 582       582/582
(100 %)
0 diff
(100 %id)
DA850974 placenta .c 48 to 496 83 to 531   capped   530/530
(100 %)
0 diff
(100 %id)
DA851869 placenta .c 48 to 513 99 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA853644 placenta .c 48 to 540 83 to 577   capped   576/576
(100 %)
3 diff
(99.5 %id)
DA855341 placenta .c 48 to 526 63 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA857204 placenta .c 48 to 566 83 to 601   capped   600/600
(100 %)
0 diff
(100 %id)
DA862138 placenta .c 48 to 566 64 to 583   capped   582/582
(100 %)
2 diff
(99.7 %id)
BM827814 stomach .c 48 to 618 88 to 658       650/650
(100 %)
0 diff
(100 %id)
DA992150 synovial membrane tissue from rheumatioidarthritis .c 48 to 544 64 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA992494 synovial membrane tissue from rheumatioidarthritis .c 48 to 519 64 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
DA993364 synovial membrane tissue from rheumatioidarthritis .c 48 to 498 83 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
BM153067 leukopheresis .c 48 to 438 69 to 459       459/459
(100 %)
1 diff
(99.8 %id)
DB219542 trachea .c 48 to 510 85 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DB222394 trachea .c 48 to 515 97 to 567   capped   566/566
(100 %)
3 diff
(99.5 %id)
DB227185 trachea .c 48 to 563 64 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DB230676 trachea .c 48 to 563 87 to 602   capped   601/601
(100 %)
3 diff
(99.6 %id)
DB240122 trachea .c 48 to 541 99 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DB275881 uterus .c 48 to 530 87 to 572   capped   571/571
(100 %)
5 diff
(99.2 %id)
DB285286 uterus .c 48 to 511 87 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DB286875 uterus .c 48 to 519 83 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DR432864 mixed .c 49 to 738 1 to 688       688/688
(100 %)
6 diff
(99.2 %id)
DR432455 mixed .c 49 to 750 1 to 702       702/703
(99 %)
9 diff
(98.8 %id)
CV026928 mixed .c 60 to 524 1 to 472       472/472
(100 %)
42 diff
(91.2 %id)
CV569565 cornea, eye .c 166 to 783 1 to 618       618/618
(100 %)
0 diff
(100 %id)
DA124406 cerebellum .c 173 to 721 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA326035 hippocampus .c 189 to 734 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA336735 hippocampus .c 201 to 790 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA416068 thalamus .c 227 to 787 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
CN258422 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 260 to 995 13 to 750       738/750
(98 %)
10 diff
(98.7 %id)
BU195213 melanotic melanoma, skin .c 263 to 1163 1 to 908       908/908
(100 %)
15 diff
(98.4 %id)
CN258419 embryonic stem cells, DMSO-treated H9 cellline .c 266 to 767 1 to 502       502/502
(100 %)
0 diff
(100 %id)
DB283674 uterus .c 294 to 841 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
BM836101 Ascites, stomach .c 343 to 798 1 to 456       456/456
(100 %)
0 diff
(100 %id)
DA505580 brain .c 344 to 914 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
BM755201 stomach .c 362 to 870 1 to 509       509/509
(100 %)
0 diff
(100 %id)
BP238839 Liver .c 370 to 972 1 to 603       603/603
(100 %)
4 diff
(99.4 %id)
BP250765 hippocampus .c 383 to 963 1 to 581       581/582
(99 %)
1 diff
(99.9 %id)
DA189914 amygdala .c 452 to 1026 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA330789 hippocampus .c 483 to 1038 2 to 560   capped   559/559
(100 %)
4 diff
(99.3 %id)
DA439576 tongue, tumor tissue .c 543 to 1129 2 to 589   capped   588/588
(100 %)
2 diff
(99.7 %id)
DA720352   .c 553 to 1133 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
DB082227 testis .c 637 to 1202 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DB236873 trachea .c 637 to 1193 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA483364 brain .c 709 to 1416 2 to 708   capped   707/748
(94 %)
2 diff
(99.8 %id)
BX370542   .c 763 to 1416 1 to 657       657/657
(100 %)
4 diff
(99.4 %id)
BP265307 thyroid .c 793 to 1372 1 to 580       580/580
(100 %)
2 diff
(99.7 %id)
DA243105 brain .c 835 to 1424 2 to 591   capped   590/590
(100 %)
2 diff
(99.7 %id)
DA476410   .c 846 to 1427 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA419868 cord Blood .c 852 to 1425 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
TI_154103373   .c 865 to 1835 1040 to 77   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 964/1086
(88 %)
17 diff
(98.5 %id)
BP344583 synovial membrane .c 877 to 1453 1 to 577       577/577
(100 %)
1 diff
(99.9 %id)
DA554019   .c 890 to 1453 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA999969 breast, tumor tissue .c 899 to 1458 2 to 561   capped   560/560
(100 %)
4 diff
(99.3 %id)
BP284964 lung .c 918 to 1498 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
DA305948 hippocampus .c 920 to 1510 2 to 592   capped   591/591
(100 %)
1 diff
(99.9 %id)
DA224144 brain .c 933 to 1519 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DA490765 brain .c 936 to 1516 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA458774 tongue, tumor tissue .c 943 to 1413 2 to 472   capped   471/471
(100 %)
0 diff
(100 %id)
BP288722 lung .c 968 to 1551 1 to 584       584/584
(100 %)
2 diff
(99.7 %id)
DA863491 placenta .c 973 to 1620 2 to 649   capped   648/648
(100 %)
0 diff
(100 %id)
DA863515 placenta .c 973 to 1530 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA457729 tongue, tumor tissue .c 1004 to 1569 2 to 568   capped   565/567
(99 %)
1 diff
(99.9 %id)
BQ682020 melanotic melanoma, cell line, skin .c 1009 to 1821 1 to 819       819/981
(83 %)
13 diff
(98.7 %id)
BQ677591 melanotic melanoma, cell line, skin .c 1009 to 1724 1 to 723       723/923
(78 %)
19 diff
(98.0 %id)
BQ882280 melanotic melanoma, cell line, skin .c 1009 to 1581 1 to 573       573/1063
(53 %)
9 diff
(99.2 %id)
BP336633 coronary artery .c 1009 to 1632 1 to 624       624/624
(100 %)
3 diff
(99.6 %id)
AL045201 testis .c 1015 to 1530 1 to 516       516/516
(100 %)
0 diff
(100 %id)
DA473713   .c 1093 to 1656 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
BQ436771 melanotic melanoma, skin .c 1094 to 1951 1 to 861       861/865
(99 %)
6 diff
(99.4 %id)
BM046948 carcinoma, cell line, Prostate .c 1095 to 1739 1 to 647       647/766
(84 %)
9 diff
(98.9 %id)
TI_154105117   .c 1111 to 1835 803 to 77   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 727/804
(90 %)
4 diff
(99.6 %id)
BG981889 colon_normal .c 1122 to 1233 1 to 112       112/112
(100 %)
0 diff
(100 %id)
BP344514 synovial membrane .c 1135 to 1714 1 to 580       580/580
(100 %)
0 diff
(100 %id)
CX762161 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 1178 to 1840 1 to 663     Submitted on the opposite strand 663/663
(100 %)
1 diff
(99.9 %id)
BQ918321 large cell carcinoma, lung .c 1264 to 2045 14 to 798       785/886
(88 %)
15 diff
(98.4 %id)
BQ425402 melanotic melanoma, skin .c 1292 to 2138 1 to 851       851/878
(96 %)
12 diff
(98.7 %id)
DA031079   .c 1399 to 1957 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
CN258426 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 1412 to 1975 1 to 565       565/565
(100 %)
1 diff
(99.9 %id)
BU171926 melanotic melanoma, skin .c 1510 to 2251 1 to 747       747/891
(83 %)
14 diff
(98.5 %id)
TI_1948150695   .c 1516 to 2278 134 to 904       771/1337
(57 %)
15 diff
(98.9 %id)
TI_1948150696   .c 1516 to 2075 137 to 697       560/1231
(45 %)
11 diff
(99.2 %id)
TI_1948150960   .c 1516 to 2139 135 to 760       626/1426
(43 %)
11 diff
(99.3 %id)
TI_1948150961   .c 1516 to 2136 138 to 760       623/1220
(51 %)
7 diff
(99.5 %id)
TI_1948151224   .c 1516 to 2050 138 to 671       534/1359
(39 %)
8 diff
(99.5 %id)
TI_1948151225   .c 1516 to 2214 130 to 831       702/1115
(62 %)
6 diff
(99.5 %id)
CV807374 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 1569 to 2321 1 to 753       753/880
(85 %)
4 diff
(99.6 %id)
BQ422605 large cell carcinoma, lung .c 1571 to 2393 1 to 824       824/848
(97 %)
5 diff
(99.5 %id)
BQ267719 insulinoma, Pancreas .c 1588 to 2129 1 to 542       542/542
(100 %)
6 diff
(98.9 %id)
BU073080 insulinoma, Pancreas .c 1588 to 2212 1 to 625       625/629
(99 %)
9 diff
(98.6 %id)
BU781742 insulinoma, Pancreas .c 1588 to 2016 1 to 429       429/429
(100 %)
5 diff
(98.9 %id)
BU789734 insulinoma, Pancreas .c 1588 to 2192 1 to 605       605/605
(100 %)
6 diff
(99.1 %id)
BP345604 synovial membrane .c 1681 to 2259 1 to 579       579/579
(100 %)
0 diff
(100 %id)
CN258416 embryonic stem cells, cell lines H1, H7, andH9 .c 1684 to 2364 1 to 681       681/681
(100 %)
3 diff
(99.6 %id)
DA776370 brain .c 1731 to 2297 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DB003013 breast, tumor tissue .c 1768 to 2292 2 to 526   capped   525/525
(100 %)
0 diff
(100 %id)
DA172975 amygdala .c 1773 to 2342 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
EC490053 Prostate .c 1801 to 1881 86 to 5       82/100
(82 %)
0 diff
(100 %id)
DA577934   .c 1824 to 2399 2 to 579   capped   578/578
(100 %)
5 diff
(99.2 %id)
BP255582 Kidney .c 1839 to 2413 1 to 576       576/576
(100 %)
2 diff
(99.7 %id)
CN258421 embryonic stem cells, cell lines H1, H7, andH9 .c 1852 to 2489 1 to 639       639/639
(100 %)
2 diff
(99.7 %id)
DA307905 hippocampus .c 1856 to 2419 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA489577 brain .c 1877 to 2447 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA506197 brain .c 1895 to 2449 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
BX350537   .c 1898 to 2805 909 to 5       905/910
(99 %)
10 diff
(99.0 %id)
DA544811   .c 1908 to 2456 2 to 551   capped   550/550
(100 %)
3 diff
(99.5 %id)
AL357618   .c 1910 to 2533 10 to 636       627/636
(98 %)
9 diff
(98.6 %id)
BU152835 embryonal carcinoma, cell line, testis .c 1952 to 2835 1 to 889       889/890
(99 %)
11 diff
(98.8 %id)
BC118646 PCR rescued clones .c 1958 to 3065 1113 to 6     Submitted on the opposite strand 1108/1118
(99 %)
3 diff
(99.8 %id)
BC118566 PCR rescued clones .c 1958 to 3065 1113 to 6     Submitted on the opposite strand 1108/1118
(99 %)
2 diff
(99.9 %id)
BP227249   .c 1976 to 2557 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA649133   .c 2008 to 2516 2 to 510   capped   509/509
(100 %)
1 diff
(99.9 %id)
BM908213 brain, medulla .c 2024 to 2965 9 to 955       947/1060
(89 %)
27 diff
(97.5 %id)
AL038594 Kidney .c 2041 to 2730 11 to 700       690/701
(98 %)
11 diff
(98.5 %id)
BQ212762 melanotic melanoma, skin .c 2045 to 2872 1 to 830       830/858
(96 %)
10 diff
(98.9 %id)
DB192915 ovary, tumor tissue .c 2119 to 2605 2 to 489   capped   488/488
(100 %)
1 diff
(99.8 %id)
BP242969 Liver .c 2144 to 2727 1 to 584       584/584
(100 %)
3 diff
(99.5 %id)
BP344157 synovial membrane .c 2154 to 2736 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA268686 caudate nucleus .c 2192 to 2756 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB191934 ovary, tumor tissue .c 2194 to 2733 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
BM045712 carcinoma, cell line, Prostate .c 2206 to 3092 1 to 888       888/898
(98 %)
22 diff
(97.6 %id)
BM906912 brain, hippocampus .c 2212 to 3096 14 to 905       892/1126
(79 %)
25 diff
(97.8 %id)
DA959397 Spleen .c 2225 to 2773 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
CX163173 human embryonic stem cells differentiated toan early endodermal cell type .c 2239 to 3089 1 to 851       851/851
(100 %)
2 diff
(99.8 %id)
EC496535 Prostate .c 2241 to 2332 1 to 90       90/90
(100 %)
5 diff
(94.5 %id)
EC580624 Prostate .c 2241 to 2332 1 to 92       92/92
(100 %)
0 diff
(100 %id)
DB004199 breast, tumor tissue .c 2244 to 2748 2 to 506   capped   505/505
(100 %)
0 diff
(100 %id)
BU185560 ductal carcinoma, cell line, Pancreas .c 2246 to 2962 1 to 726       726/1009
(71 %)
17 diff
(98.4 %id)
DA912313   .c 2250 to 2830 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
CN258420 embryonic stem cells, cell lines H1, H7, andH9 .c 2260 to 2796 1 to 537       537/537
(100 %)
1 diff
(99.9 %id)
BP228166   .c 2261 to 2827 1 to 567       567/567
(100 %)
0 diff
(100 %id)
BG252896 adenocarcinoma, cell line, Liver .c 2297 to 3092 1 to 789       789/941
(83 %)
16 diff
(98.3 %id)
BQ231860 embryonal carcinoma, cell line, testis .c 2335 to 3215 1 to 882       880/882
(99 %)
3 diff
(99.7 %id)
BU845566 ovary, teratocarcinoma, cell line .c 2355 to 2965 1 to 613       613/768
(79 %)
7 diff
(99.1 %id)
CV569451 cornea, eye .c 2389 to 2913 1 to 525       525/525
(100 %)
0 diff
(100 %id)
DA752868   .c 2393 to 2946 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
TI_44184796   .c 2401 to 3167 22 to 789       768/798
(96 %)
8 diff
(99.0 %id)
BI522540 brain .c 2407 to 3167 1 to 762       762/771
(98 %)
2 diff
(99.8 %id)
BQ214069 melanotic melanoma, skin .c 2407 to 3095 19 to 707       689/880
(78 %)
12 diff
(98.7 %id)
DA469283   .c 2427 to 2994 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DB260514 uterus .c 2432 to 3011 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
CA405535 adipose .c 2440 to 3050 1 to 609       609/609
(100 %)
2 diff
(99.7 %id)
AW673447 cervix .c 2442 to 2781 2 to 342       341/346
(98 %)
3 diff
(99.2 %id)
BP379306 uterus .c 2462 to 3043 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BE771922 prostate_tumor .c 2474 to 2619 1 to 144       144/144
(100 %)
7 diff
(95.2 %id)
BI870564 adenocarcinoma, cell line, Liver .c 2482 to 3042 1 to 561       561/562
(99 %)
3 diff
(99.5 %id)
TI_57229493   .c 2482 to 3042 54 to 614       561/562
(99 %)
3 diff
(99.5 %id)
BM927704 hepatocellular carcinoma, cell line, Liver .c 2486 to 3497 1 to 1012       1012/1026
(98 %)
22 diff
(97.9 %id)
BQ643770 hepatocellular carcinoma, cell line, Liver .c 2486 to 3405 1 to 923       923/933
(98 %)
29 diff
(96.9 %id)
BI765956 pooled colon, kidney, stomach .c 2492 to 2824 357 to 694       338/694
(48 %)
6 diff
(99.2 %id)
TI_57149773   .c 2492 to 2824 357 to 694       338/694
(48 %)
6 diff
(99.2 %id)
AJ430458   .c 2496 to 2884 1 to 389       389/389
(100 %)
1 diff
(99.8 %id)
AI752059 Bone, Hip .c 2503 to 2859 8 to 364       357/364
(98 %)
6 diff
(98.4 %id)
BM543171 embryonal carcinoma, cell line, testis .c 2532 to 3361 1 to 834       834/1051
(79 %)
24 diff
(97.8 %id)
BE786824 large cell carcinoma, lung .c 2540 to 3166 1 to 631       631/1076
(58 %)
11 diff
(99.0 %id)
AU125275   .c 2546 to 3304 2 to 763   capped   760/769
(98 %)
4 diff
(99.5 %id)
AJ430452   .c 2548 to 2895 348 to 1       348/348
(100 %)
1 diff
(99.8 %id)
CD673088 eye, Iris .c 2556 to 3201 1 to 647       647/647
(100 %)
2 diff
(99.7 %id)
BG612296 adenocarcinoma, Prostate .c 2556 to 3236 1 to 680       680/680
(100 %)
2 diff
(99.8 %id)
BM802948 duodenal adenocarcinoma, cell line, small intestine .c 2586 to 3331 1 to 742       742/843
(88 %)
5 diff
(99.5 %id)
BP269311 thyroid .c 2593 to 3168 1 to 576       576/579
(99 %)
2 diff
(99.7 %id)
H73787 liver and spleen .c 2628 to 2966 13 to 351       339/459
(73 %)
2 diff
(99.6 %id)
H73800 liver and spleen .c 2628 to 3031 13 to 421       409/432
(94 %)
8 diff
(98.2 %id)
BM824319 Ascites, stomach .c 2628 to 3242 1 to 615       615/615
(100 %)
15 diff
(97.6 %id)
BM801734 duodenal adenocarcinoma, cell line, small intestine .c 2637 to 3257 1 to 622       622/962
(64 %)
16 diff
(98.4 %id)
BX342175   .c 2642 to 3601 953 to 1       953/953
(100 %)
18 diff
(98.2 %id)
BE280981 choriocarcinoma, placenta .c 2644 to 3338 39 to 725       687/786
(87 %)
10 diff
(98.8 %id)
BP328670 rectum .c 2649 to 3231 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BG741718 skin .c 2661 to 3428 1 to 771       771/771
(100 %)
5 diff
(99.4 %id)
DA617939   .c 2661 to 3234 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
EC467906 Prostate .c 2672 to 2765 1 to 99       99/99
(100 %)
7 diff
(93.0 %id)
EC448194 Prostate .c 2676 to 2765 1 to 88       88/88
(100 %)
5 diff
(94.4 %id)
DA132567 alzheimer cortex .c 2678 to 3221 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
CF243142 Brain glioblastoma .c 2685 to 3499 1 to 817       817/817
(100 %)
4 diff
(99.6 %id)
BF980802 duodenal adenocarcinoma, cell line, small intestine .c 2691 to 3415 1 to 731       731/1140
(64 %)
11 diff
(99.1 %id)
BG828309 muscle, rhabdomyosarcoma .c 2692 to 3386 1 to 699       699/1089
(64 %)
13 diff
(98.9 %id)
EC564352 Prostate .c 2710 to 2804 7 to 101       95/101
(94 %)
6 diff
(94.1 %id)
BE897497 melanotic melanoma, skin .c 2713 to 3073 1 to 362       362/368
(98 %)
4 diff
(99.0 %id)
BE891177 melanotic melanoma, skin .c 2715 to 3418 1 to 700       700/944
(74 %)
7 diff
(99.3 %id)
BG315364   .c 2725 to 2926 1 to 203       203/203
(100 %)
4 diff
(98.1 %id)
BX366433 Neuroblastoma Cot 25-normalized .c 2728 to 3645 918 to 1       918/922
(99 %)
8 diff
(99.2 %id)
EC572615 Prostate .c 2734 to 2844 1 to 112       112/112
(100 %)
3 diff
(97.4 %id)
BG035645 adenocarcinoma, cell line, Liver .c 2739 to 3414 13 to 688       676/987
(68 %)
20 diff
(98.0 %id)
AL557701 T cells (Jurkat cell line), T cells from T cell leukemia .c 2748 to 3422 1 to 675       675/675
(100 %)
0 diff
(100 %id)
EC562412 Prostate .c 2751 to 2853 1 to 103       103/103
(100 %)
0 diff
(100 %id)
CN258417 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 2755 to 3327 1 to 573       573/573
(100 %)
1 diff
(99.9 %id)
BM798153 Ascites, stomach .c 2760 to 3212 1 to 453       453/453
(100 %)
0 diff
(100 %id)
AW390276 stomach .c 2766 to 3043 1 to 275       275/276
(99 %)
5 diff
(98.2 %id)
EC456828 Prostate .c 2775 to 2871 1 to 97       97/97
(100 %)
0 diff
(100 %id)
AW362861 colon .c 2783 to 3394 1 to 607       607/639
(94 %)
16 diff
(97.5 %id)
BG286369 bladder, transitional cell papilloma, cell line .c 2783 to 3429 1 to 647       647/647
(100 %)
4 diff
(99.4 %id)
EC508590 Prostate .c 2787 to 2877 1 to 92       92/100
(92 %)
8 diff
(92.0 %id)
EC464985 Prostate .c 2788 to 2876 1 to 91       91/97
(93 %)
6 diff
(93.9 %id)
EC464880 Prostate .c 2789 to 2877 1 to 93       93/101
(92 %)
5 diff
(95.1 %id)
EC508631 Prostate .c 2801 to 2877 10 to 89       80/98
(81 %)
5 diff
(94.9 %id)
BG250318 adenocarcinoma, cell line, Liver .c 2824 to 3511 1 to 689       689/943
(73 %)
15 diff
(98.5 %id)
BG292165 bladder, transitional cell papilloma, cell line .c 2824 to 3503 1 to 680       680/856
(79 %)
19 diff
(97.8 %id)
BQ425639 melanotic melanoma, skin .c 2865 to 3739 1 to 874       874/880
(99 %)
2 diff
(99.8 %id)
BQ422850 melanotic melanoma, skin .c 2867 to 3717 9 to 869       861/872
(98 %)
15 diff
(98.3 %id)
BQ880476 dorsal root ganglia .c 2873 to 3757 20 to 907       888/915
(97 %)
23 diff
(97.5 %id)
TI_1948151226   .c 2875 to 3814 1075 to 127       947/1242
(76 %)
26 diff
(98.0 %id)
CA306675 Alveolar Macrophage, lung .c 2875 to 3656 801 to 9   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 805/801
(100 %)
57 diff
(92.9 %id)
TI_1948150698   .c 2876 to 3814 1072 to 130       943/1374
(68 %)
20 diff
(98.6 %id)
AA346941 heart .c 2886 to 3148 1 to 265       265/265
(100 %)
5 diff
(98.2 %id)
T83120 liver and spleen .c 2903 to 3213 14 to 325       312/330
(94 %)
11 diff
(96.7 %id)
BI756954 brain .c 2905 to 3791 1 to 891       891/894
(99 %)
12 diff
(98.7 %id)
TI_57220208   .c 2905 to 3791 36 to 926       891/929
(95 %)
17 diff
(98.2 %id)
BM473080 duodenal adenocarcinoma, cell line, small intestine .c 2916 to 3898 1 to 996       996/1002
(99 %)
23 diff
(97.8 %id)
BG696090 skin .c 2930 to 3783 1 to 864       864/935
(92 %)
21 diff
(97.8 %id)
BG315293   .c 2934 to 3342 419 to 9       411/423
(97 %)
8 diff
(98.2 %id)
BM809040 brain, hippocampus .c 2938 to 3812 9 to 893       885/1020
(86 %)
16 diff
(98.5 %id)
BG315217   .c 2949 to 3044 1 to 97       97/97
(100 %)
1 diff
(99.0 %id)
BE771906 prostate_tumor .c 2960 to 3360 403 to 5       399/403
(99 %)
1 diff
(99.8 %id)
TI_1948150963   .c 2967 to 3814 983 to 126       858/1345
(63 %)
10 diff
(99.3 %id)
TI_1948151227   .c 2968 to 3814 977 to 128       850/1379
(61 %)
27 diff
(98.1 %id)
Z28550 leg muscle, skeletal muscle .c 2989 to 3271 1 to 283       283/334
(84 %)
8 diff
(97.7 %id)
BM796917 Ascites, stomach .c 2989 to 3561 1 to 573       573/573
(100 %)
0 diff
(100 %id)
AW376632 colon .c 2996 to 3228 13 to 245       233/245
(95 %)
7 diff
(97.2 %id)
AW376643 colon .c 3002 to 3228 1 to 227       227/227
(100 %)
0 diff
(100 %id)
AW376802 colon .c 3002 to 3228 227 to 1       227/227
(100 %)
1 diff
(99.6 %id)
AW848197 colon .c 3002 to 3228 1 to 227       227/227
(100 %)
2 diff
(99.2 %id)
AW848552 colon .c 3002 to 3228 1 to 227       227/227
(100 %)
2 diff
(99.2 %id)
AW376583 colon .c 3007 to 3228 16 to 237       222/237
(93 %)
9 diff
(96.3 %id)
CN258428 embryonic stem cells, DMSO-treated H9 cellline .c 3017 to 3739 1 to 723       723/723
(100 %)
0 diff
(100 %id)
DR432459 mixed .c 3021 to 3814 797 to 6       792/802
(98 %)
10 diff
(98.8 %id)
BM724291 eye, fetal eye .c 3031 to 3650 1 to 621       621/622
(99 %)
2 diff
(99.7 %id)
BQ883282 melanotic melanoma, cell line, skin .c 3036 to 3806 1 to 780       780/941
(82 %)
26 diff
(97.3 %id)
BQ926933 brain, neuroblastoma, cell line .c 3051 to 3971 1 to 940       940/948
(99 %)
33 diff
(96.6 %id)
BQ422517 melanotic melanoma, skin .c 3054 to 3795 1 to 750       750/906
(82 %)
23 diff
(97.5 %id)
CV816367 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 3060 to 3898 1 to 842       842/875
(96 %)
13 diff
(98.6 %id)
AA295317 Pancreas .c 3064 to 3280 1 to 217       217/217
(100 %)
4 diff
(98.2 %id)
DT217408 brain .c 3081 to 3776 1 to 696       696/696
(100 %)
1 diff
(99.9 %id)
TI_1948150962   .c 3092 to 3814 860 to 127       734/1273
(57 %)
23 diff
(98.2 %id)
BQ549065 insulinoma, Pancreas .c 3095 to 3656 574 to 2     Submitted on the opposite strand 584/582
(100 %)
56 diff
(90.4 %id)
BE931347 head_neck .c 3101 to 3487 387 to 1       387/387
(100 %)
1 diff
(99.8 %id)
BM545788 ovary (pool of 3) .c 3102 to 3867 9 to 790       782/1008
(77 %)
27 diff
(97.4 %id)
BI087989 cervix .c 3110 to 3816 1 to 699       699/699
(100 %)
12 diff
(98.3 %id)
T30544 Liver .c 3115 to 3313 1 to 199       199/199
(100 %)
3 diff
(98.5 %id)
BG546160 lung .c 3125 to 3919 1 to 794       794/797
(99 %)
19 diff
(97.7 %id)
DR432633 mixed .c 3143 to 3814 676 to 6       671/676
(99 %)
4 diff
(99.5 %id)
TI_57150196   .c 3144 to 3915 26 to 797       772/797
(96 %)
9 diff
(98.9 %id)
BI763724 pooled colon, kidney, stomach .c 3146 to 3915 1 to 770       770/770
(100 %)
3 diff
(99.7 %id)
BQ277670 ovary, teratocarcinoma, cell line .c 3148 to 3831 1 to 696       696/1253
(55 %)
52 diff
(95.9 %id)
CA337064 posterior rhombomeres 5-8 (4 pooled) .c 3149 to 3777 1 to 629       629/629
(100 %)
0 diff
(100 %id)
DR432857 mixed .c 3150 to 3814 670 to 6       665/670
(99 %)
1 diff
(99.9 %id)
CF145852 CNCAP(3)T-225 cell line, Prostate .c 3152 to 3565 7 to 419       413/419
(98 %)
6 diff
(98.6 %id)
TI_154178142   .c 3153 to 3706 81 to 631       551/553
(99 %)
18 diff
(96.8 %id)
AW855261 colon .c 3164 to 3368 30 to 235       206/235
(87 %)
11 diff
(95.4 %id)
BG938687 Bone, Hip .c 3186 to 3455 17 to 287       271/287
(94 %)
8 diff
(97.3 %id)
AA095975   .c 3197 to 3394 1 to 198       198/199
(99 %)
10 diff
(95.0 %id)
H82662 liver and spleen .c 3222 to 3608 1 to 393       393/449
(87 %)
10 diff
(97.8 %id)
TI_57193527   .c 3227 to 3825 48 to 656       609/983
(61 %)
18 diff
(98.2 %id)
AL036588 brain .c 3228 to 3614 1 to 389       389/389
(100 %)
8 diff
(98.0 %id)
BM725059 eye, fetal eye .c 3233 to 3771 1 to 539   fully sequenced,   539/539
(100 %)
0 diff
(100 %id)
FN058060 breast carcinoma .c 3236 to 3333 1 to 98       98/98
(100 %)
0 diff
(100 %id)
BG315520   .c 3237 to 3331 97 to 1       97/97
(100 %)
4 diff
(95.9 %id)
CN258423 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 3248 to 3875 1 to 628       628/628
(100 %)
2 diff
(99.7 %id)
BM904713 leiomyosarcoma, uterus .c 3263 to 3611 1 to 350       350/1360
(25 %)
8 diff
(99.5 %id)
CN258430 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 3276 to 3630 1 to 355       355/355
(100 %)
0 diff
(100 %id)
BF918373 nervous_tumor .c 3284 to 3559 1 to 273       273/273
(100 %)
16 diff
(94.2 %id)
BQ344411 nervous_tumor .c 3310 to 3573 273 to 10       264/299
(88 %)
6 diff
(98.0 %id)
BX356444 Placenta Cot 25-normalized .c 3329 to 4320 999 to 20       961/1008
(95 %)
33 diff
(96.8 %id)
BE001642 breast_normal .c 3387 to 3560 1 to 173       173/173
(100 %)
10 diff
(94.3 %id)
AL579680 T cells (Jurkat cell line), T cells from T cell leukemia .c 3620 to 4327 716 to 8       709/716
(99 %)
0 diff
(100 %id)
BM680422 eye, fetal eye .c 3671 to 4377 725 to 19   AAA   707/707
(100 %)
1 diff
(99.9 %id)
BU071068 insulinoma, Pancreas .c 3708 to 4377 685 to 16   tiling clone, AAA   670/670
(100 %)
0 diff
(100 %id)
BU786870 insulinoma, Pancreas .c 3734 to 4377 659 to 16   AAA   644/644
(100 %)
0 diff
(100 %id)
BU789461 insulinoma, Pancreas .c 3738 to 4377 655 to 16   AAA   640/640
(100 %)
0 diff
(100 %id)
BU741960 eye, fetal eye .c 3741 to 4377 655 to 19   fully sequenced, AAA   637/637
(100 %)
1 diff
(99.9 %id)
DB362956   .c 3817 to 4376 554 to 1       554/554
(100 %)
22 diff
(96.1 %id)
BQ272327 insulinoma, Pancreas .c 3834 to 4377 559 to 16   AAA   544/544
(100 %)
0 diff
(100 %id)
AL038595 Kidney .c 3963 to 4377 437 to 23   AAA   415/415
(100 %)
1 diff
(99.8 %id)
AW675770 cervix .c 4169 to 4377 223 to 15   AAA   209/209
(100 %)
0 diff
(100 %id)
CN292358 embryonic stem cells, DMSO-treated H9 cellline .d 1 to 645 1 to 646   tiling clone,   646/646
(100 %)
1 diff
(99.9 %id)
AK127094 brain .d 377 to 6050 1 to 5675 S152N G389S Y467H M499R tiling clone, available from FLJ,   5675/5675
(100 %)
12 diff
(99.8 %id)
AY763579   .d 377 to 6050 1 to 5675 S152N G389S Y467H M499R     5675/5675
(100 %)
12 diff
(99.8 %id)
NM_001033028.1   .d 377 to 3709 1 to 3333 exact RefSeq, AAA   3333/3333
(100 %)
0 diff
(100 %id)
DA244065 brain .d 378 to 967 2 to 592   capped   591/591
(100 %)
1 diff
(99.9 %id)
BC063869 Peripheral Nervous System, sympathetictrunk .d 583 to 3709 1 to 3127 Q325* tiling clone, available from MGC, AAA   3127/3127
(100 %)
5 diff
(99.9 %id)
BQ720345 sympathetic trunk .d 584 to 1175 1 to 598   available from MGC,   598/1039
(57 %)
11 diff
(99.0 %id)
TI_1948150697   .d 2590 to 3146 687 to 127       561/1311
(42 %)
20 diff
(98.5 %id)
BG419710 Kidney, renal cell adenocarcinoma .d 2592 to 3244 1 to 653       653/653
(100 %)
0 diff
(100 %id)
BM686228 eye, eye anterior segment .d 2627 to 3213 1 to 587   fully sequenced,   587/587
(100 %)
4 diff
(99.4 %id)
BX463738 brain, fetal brain .d 2656 to 3697 1035 to 1       1035/1039
(99 %)
29 diff
(97.3 %id)
CN258429 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 2669 to 3307 1 to 639       639/639
(100 %)
2 diff
(99.7 %id)
TI_149312112   .d 2688 to 3709 1097 to 89   AAA   1009/1011
(99 %)
22 diff
(97.9 %id)
T73942 Liver .d 2728 to 2982 1 to 258       258/275
(93 %)
8 diff
(97.1 %id)
BQ225791 embryonal carcinoma, cell line, testis .d 2748 to 3624 1 to 879       879/879
(100 %)
16 diff
(98.2 %id)
W20133 parathyroid gland, parathyroid tumor .d 2761 to 2982 1 to 222       222/223
(99 %)
5 diff
(97.8 %id)
BU166069 melanotic melanoma, skin .d 2763 to 3490 1 to 733       733/913
(80 %)
13 diff
(98.6 %id)
CN258414 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 2773 to 3292 1 to 520       520/520
(100 %)
2 diff
(99.7 %id)
BM688872 eye, eye anterior segment .d 2789 to 3267 9 to 487       479/487
(98 %)
0 diff
(100 %id)
BM012804 brain, neuroblastoma, cell line .d 2808 to 3710 1 to 902       902/906
(99 %)
39 diff
(95.7 %id)
TI_59382032   .d 2809 to 3710 98 to 998       901/905
(99 %)
38 diff
(95.9 %id)
DR763066 embryonic stem .d 2810 to 3665 1 to 856       856/856
(100 %)
0 diff
(100 %id)
BF970173 adrenal cortex carcinoma, cell line, adrenal gland .d 2826 to 3602 1 to 764       764/933
(81 %)
14 diff
(98.5 %id)
BM727801 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 2831 to 3193 1 to 363   fully sequenced,   363/363
(100 %)
0 diff
(100 %id)
TI_154194527   .d 2835 to 3420 64 to 650       587/1021
(57 %)
30 diff
(97.1 %id)
TI_149271014   .d 2836 to 3709 950 to 93   AAA   858/1008
(85 %)
30 diff
(97.1 %id)
AI752356 Bone, Hip .d 2873 to 3334 1 to 462       462/462
(100 %)
5 diff
(99.0 %id)
AI752386 Bone, Hip .d 2873 to 3269 1 to 397       397/397
(100 %)
5 diff
(98.8 %id)
N95114 liver and spleen .d 2875 to 3276 1 to 409   fully sequenced,   409/409
(100 %)
4 diff
(99.1 %id)
AI205964 Kidney .d 2881 to 3710 830 to 3       828/830
(99 %)
6 diff
(99.3 %id)
AA478821 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 2898 to 3277 1 to 380       380/380
(100 %)
0 diff
(100 %id)
AA436242 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 2898 to 3325 1 to 427   fully sequenced,   427/427
(100 %)
1 diff
(99.8 %id)
AA456560.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 2898 to 3367 1 to 470     also hits gene C1orf183 470/470
(100 %)
0 diff
(100 %id)
AA970370 pooled .d 2908 to 3103 196 to 1       196/196
(100 %)
0 diff
(100 %id)
BM977817 lung, Primary Lung Cystic Fibrosis EpithelialCells .d 2944 to 3709 784 to 19   AAA   766/766
(100 %)
2 diff
(99.8 %id)
AI911769 pooled .d 2950 to 3709 770 to 12   AAA   759/759
(100 %)
12 diff
(98.5 %id)
BU600893 mixed (pool of 40 RNAs) .d 2951 to 3708 1 to 758       758/759
(99 %)
5 diff
(99.4 %id)
CB529318 Aveolar Macrophage, lung .d 2951 to 3709 775 to 19   AAA   757/757
(100 %)
3 diff
(99.7 %id)
AA235144 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 2958 to 3427 1 to 468       468/468
(100 %)
2 diff
(99.6 %id)
BU622100 Cell Line, Chondrosarcoma .d 2966 to 3709 762 to 19   AAA   744/744
(100 %)
0 diff
(100 %id)
AK024816   .d 2969 to 3709 1 to 741   available from FLJ, AAA   741/741
(100 %)
1 diff
(99.9 %id)
AW051484 brain, glioblastoma (pooled) .d 2982 to 3709 732 to 11   AAA   722/748
(96 %)
17 diff
(97.8 %id)
TI_153955320   .d 2982 to 3692 127 to 838       712/946
(75 %)
7 diff
(99.3 %id)
TI_149285954   .d 2983 to 3709 828 to 104   AAA   725/781
(92 %)
8 diff
(99.0 %id)
TI_227715031   .d 2983 to 3709 830 to 108   AAA   723/958
(75 %)
16 diff
(98.4 %id)
BU624397 cell lines, Enchondroma .d 2988 to 3709 740 to 19   AAA   722/722
(100 %)
1 diff
(99.9 %id)
TI_154100797   .d 2990 to 3709 814 to 95   AAA   720/807
(89 %)
10 diff
(98.8 %id)
TI_149296816   .d 2993 to 3709 805 to 97   AAA   709/824
(86 %)
19 diff
(97.7 %id)
BG113568 Bone, osteosarcoma, cell line .d 2997 to 3709 1 to 702   AAA   702/702
(100 %)
12 diff
(98.3 %id)
BU622161 Cell Line, Chondrosarcoma .d 2999 to 3709 730 to 19   AAA   712/714
(99 %)
3 diff
(99.6 %id)
CU444235 epidermis .d 3005 to 3624 7 to 627       621/633
(98 %)
5 diff
(99.3 %id)
CU452753 epidermis .d 3005 to 3611 7 to 614       608/615
(98 %)
9 diff
(98.6 %id)
AI378791 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 3007 to 3709 715 to 13   AAA   703/703
(100 %)
10 diff
(98.6 %id)
BU625218 cell lines, Enchondroma .d 3010 to 3709 718 to 19   AAA   700/700
(100 %)
0 diff
(100 %id)
AJ710095 heart .d 3011 to 3544 1 to 534       534/534
(100 %)
0 diff
(100 %id)
BE672902 Prostate .d 3025 to 3710 686 to 1       686/686
(100 %)
1 diff
(99.9 %id)
BF001953 colon, colon tumor, RER+ .d 3031 to 3710 683 to 4       680/683
(99 %)
0 diff
(100 %id)
CA429246 Cell Line, Chondrosarcoma .d 3034 to 3709 693 to 19   AAA   675/675
(100 %)
2 diff
(99.8 %id)
CU451407 epidermis .d 3035 to 3631 611 to 15     Submitted on the opposite strand 597/611
(97 %)
0 diff
(100 %id)
TI_149284592   .d 3036 to 3709 752 to 78   AAA   675/1160
(58 %)
36 diff
(96.9 %id)
BQ015039 Chondrosarcoma, Left Pubic Bone .d 3037 to 3709 691 to 19   AAA   673/673
(100 %)
0 diff
(100 %id)
BU623807 cell lines, Enchondroma .d 3039 to 3709 689 to 19   AAA   671/685
(97 %)
3 diff
(99.6 %id)
BE693756 breast .d 3040 to 3665 1 to 626       626/626
(100 %)
6 diff
(99.1 %id)
BI439091 Pancreas, Purified pancreatic islet .d 3044 to 3637 11 to 604       594/604
(98 %)
6 diff
(99.1 %id)
CA430346 Bone, Subchondral Bone .d 3046 to 3709 679 to 19   AAA   661/661
(100 %)
5 diff
(99.3 %id)
TI_149298534   .d 3049 to 3709 769 to 112   AAA   658/774
(85 %)
60 diff
(92.3 %id)
AA459797   .d 3053 to 3369 1 to 318       318/318
(100 %)
4 diff
(98.8 %id)
FN133452 breast carcinoma .d 3062 to 3131 1 to 68       68/68
(100 %)
5 diff
(92.7 %id)
AA430734 ovarian tumor, ovary .d 3065 to 3355 1 to 291   fully sequenced,   291/291
(100 %)
2 diff
(99.4 %id)
BU674141 lung, Primary Lung Epithelial Cells .d 3066 to 3709 661 to 19   AAA   643/643
(100 %)
3 diff
(99.6 %id)
EC562565 Prostate .d 3081 to 3166 86 to 1       86/86
(100 %)
0 diff
(100 %id)
AW511114 pooled .d 3082 to 3693 612 to 1       612/612
(100 %)
0 diff
(100 %id)
BF238740 bone marrow, from chronic myelogenous leukemia .d 3083 to 3676 1 to 597       597/597
(100 %)
4 diff
(99.4 %id)
BE904266 epithelioid carcinoma, Pancreas .d 3086 to 3697 1 to 608       608/608
(100 %)
4 diff
(99.4 %id)
FN167670 breast carcinoma .d 3087 to 3172 86 to 1     Submitted on the opposite strand 86/86
(100 %)
0 diff
(100 %id)
BQ006326 Chondrosarcoma, Left Pelvis .d 3089 to 3709 639 to 19   AAA   621/621
(100 %)
0 diff
(100 %id)
CA445033 lung, Metastatic Chondrosarcoma .d 3089 to 3709 639 to 19   AAA   621/621
(100 %)
1 diff
(99.9 %id)
CB851014 lung, Primary Lung Cystic Fibrosis EpithelialCells .d 3096 to 3709 632 to 19   AAA   614/614
(100 %)
0 diff
(100 %id)
CN258415 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 3099 to 3707 1 to 609       609/609
(100 %)
0 diff
(100 %id)
CA441568 Fibrosarcoma .d 3110 to 3709 618 to 19   AAA   600/600
(100 %)
1 diff
(99.9 %id)
BM971793 lung .d 3112 to 3709 616 to 19   AAA   598/598
(100 %)
0 diff
(100 %id)
CD365451 Alveolar Macrophage, lung .d 3112 to 3709 616 to 19   AAA   598/598
(100 %)
1 diff
(99.9 %id)
EC521097 Prostate .d 3114 to 3209 96 to 1       96/96
(100 %)
0 diff
(100 %id)
BM556016 duodenal adenocarcinoma, cell line, small intestine .d 3144 to 3709 1 to 566   AAA   566/570
(99 %)
4 diff
(99.3 %id)
CN258412 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 3147 to 3709 1 to 563       563/563
(100 %)
4 diff
(99.3 %id)
TI_154089182   .d 3150 to 3709 656 to 96   AAA   561/562
(99 %)
18 diff
(96.8 %id)
AW262049 lung, two pooled squamous cell carcinomas .d 3159 to 3710 554 to 3       552/554
(99 %)
0 diff
(100 %id)
BM681442 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 3163 to 3709 565 to 19   fully sequenced, AAA   547/547
(100 %)
0 diff
(100 %id)
CB053494 leiomyosarcoma, soft tissue .d 3165 to 3709 10 to 554   AAA   545/554
(98 %)
6 diff
(99.0 %id)
BM987334 Bone, Subchondral Bone .d 3167 to 3709 562 to 19   AAA   544/544
(100 %)
1 diff
(99.9 %id)
BI438771 Pancreas, Purified pancreatic islet .d 3193 to 3709 533 to 17   AAA   517/517
(100 %)
1 diff
(99.9 %id)
BP397619 pancreatic islet .d 3195 to 3709 1 to 517     Submitted on the opposite strand 517/517
(100 %)
2 diff
(99.7 %id)
BM672659 eye, eye anterior segment .d 3195 to 3710 533 to 18   fully sequenced,   516/533
(96 %)
0 diff
(100 %id)
AI263923 Kidney .d 3198 to 3709 513 to 1       513/513
(100 %)
1 diff
(99.9 %id)
FN103541 breast carcinoma .d 3201 to 3283 83 to 5     Submitted on the opposite strand 79/84
(94 %)
0 diff
(100 %id)
BQ188105 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 3209 to 3709 1 to 501   AAA   501/501
(100 %)
0 diff
(100 %id)
AI986151 malignant melanoma, metastatic to lymphnode, skin .d 3217 to 3710 494 to 1       494/494
(100 %)
0 diff
(100 %id)
AI986159 malignant melanoma, metastatic to lymphnode, skin .d 3219 to 3710 492 to 1       492/492
(100 %)
0 diff
(100 %id)
AI422324 brain, glioblastoma (pooled) .d 3220 to 3709 490 to 1       490/490
(100 %)
2 diff
(99.6 %id)
FN047618 breast carcinoma .d 3221 to 3343 1 to 123       123/123
(100 %)
0 diff
(100 %id)
CA432810 mixed .d 3225 to 3709 503 to 19   AAA   485/485
(100 %)
3 diff
(99.4 %id)
AA610026   .d 3233 to 3709 492 to 16   AAA   477/477
(100 %)
0 diff
(100 %id)
BF594374 colon, colon tumor, RER+ .d 3240 to 3710 473 to 3       471/473
(99 %)
0 diff
(100 %id)
AW664463 2 pooled high-grade transitional celltumors, genitourinary tract .d 3244 to 3709 488 to 23   AAA   466/466
(100 %)
1 diff
(99.8 %id)
AI401327 brain, glioblastoma (pooled) .d 3245 to 3709 465 to 1       465/465
(100 %)
3 diff
(99.4 %id)
AI684102 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .d 3245 to 3709 477 to 13   AAA   465/465
(100 %)
2 diff
(99.6 %id)
AW338310 adenocarcinoma, Pancreas .d 3245 to 3709 477 to 13   AAA   465/465
(100 %)
0 diff
(100 %id)
BF033891 adenocarcinoma, ovary .d 3245 to 3709 1 to 463   AAA   463/463
(100 %)
2 diff
(99.6 %id)
N66002 liver and spleen .d 3246 to 3709 464 to 1   fully sequenced,   464/464
(100 %)
0 diff
(100 %id)
AW027296 thymus, pooled .d 3246 to 3710 466 to 2       465/466
(99 %)
0 diff
(100 %id)
H89287 cochlea, ear .d 3248 to 3433 1 to 188   fully sequenced,   188/188
(100 %)
0 diff
(100 %id)
AI752058 Bone, Hip .d 3250 to 3672 428 to 6       423/428
(98 %)
0 diff
(100 %id)
BM989258 Fibrosarcoma .d 3261 to 3709 469 to 21       449/469
(95 %)
0 diff
(100 %id)
AI750729 Bone, Hip .d 3266 to 3654 397 to 9       389/397
(97 %)
0 diff
(100 %id)
AI279796 carcinoid, lung .d 3268 to 3709 465 to 24   AAA   442/442
(100 %)
2 diff
(99.6 %id)
AW105399 ovary, tumor, 5 pooled (see description) .d 3277 to 3709 446 to 14   AAA   433/433
(100 %)
2 diff
(99.6 %id)
AI539266 pooled .d 3279 to 3710 436 to 5       432/436
(99 %)
0 diff
(100 %id)
AI308097 2 pooled tumors (clear cell type), Kidney .d 3280 to 3709 442 to 12   AAA   431/431
(100 %)
1 diff
(99.8 %id)
AA865506 Kidney, kidney tumor .d 3282 to 3710 427 to 1       427/428
(99 %)
2 diff
(99.6 %id)
AA436243 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 3295 to 3709 427 to 13   fully sequenced, AAA   415/415
(100 %)
0 diff
(100 %id)
AI801614 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .d 3315 to 3709 395 to 1       395/395
(100 %)
0 diff
(100 %id)
BU684453 lung, Primary Lung Cystic Fibrosis EpithelialCells .d 3315 to 3709 413 to 19   AAA   395/395
(100 %)
0 diff
(100 %id)
BM151102 leukopheresis .d 3320 to 3710 413 to 23       391/413
(94 %)
0 diff
(100 %id)
AA430381 ovarian tumor, ovary .d 3325 to 3709 406 to 22   fully sequenced, AAA   385/385
(100 %)
0 diff
(100 %id)
AA234745 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 3331 to 3710 380 to 1       380/380
(100 %)
0 diff
(100 %id)
AA653605   .d 3331 to 3709 413 to 35   AAA   379/379
(100 %)
0 diff
(100 %id)
FN062607 breast carcinoma .d 3345 to 3423 1 to 79       79/79
(100 %)
2 diff
(97.5 %id)
AI247522 liver and spleen .d 3347 to 3709 363 to 1       363/363
(100 %)
0 diff
(100 %id)
AA628028 colon, colon tumor RER+ .d 3348 to 3709 362 to 1       362/362
(100 %)
0 diff
(100 %id)
AW300619 Kidney .d 3355 to 3707 355 to 3       353/355
(99 %)
0 diff
(100 %id)
T73910 Liver .d 3365 to 3709 348 to 1       348/348
(100 %)
10 diff
(97.2 %id)
H89288 cochlea, ear .d 3403 to 3673 274 to 1   fully sequenced,   274/274
(100 %)
0 diff
(100 %id)
AA459675   .d 3407 to 3709 303 to 1       303/303
(100 %)
0 diff
(100 %id)
AI264787 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 3412 to 3709 310 to 13   AAA   298/298
(100 %)
0 diff
(100 %id)
N91004 parathyroid gland, parathyroid tumor .d 3416 to 3710 300 to 6       295/300
(98 %)
0 diff
(100 %id)
AA598583   .d 3470 to 3709 256 to 17   AAA   240/240
(100 %)
0 diff
(100 %id)
AI284739 ovary, tumor, 5 pooled (see description) .d 3495 to 3709 215 to 1       215/215
(100 %)
0 diff
(100 %id)
CA392732 eye, RPE/choroid .d 3549 to 3709 1 to 161   AAA   161/161
(100 %)
0 diff
(100 %id)
AI034347 parathyroid gland, parathyroid tumor .d 3594 to 3710 123 to 7       117/123
(95 %)
0 diff
(100 %id)
AA935058 metastatic prostate bone lesion .d 3598 to 3660 1 to 63       63/63
(100 %)
0 diff
(100 %id)
FN118878 breast carcinoma .d 3656 to 3710 1 to 55       55/58
(94 %)
1 diff
(98.3 %id)
BE047994 brain, tumor, 5 pooled (see description) .d 3742 to 4122 1 to 381       381/381
(100 %)
2 diff
(99.5 %id)
DB541111.
matches multiple genes
hippocampus .d 4243 to 4707 464 to 1     also hits gene NIPA2 464/466
(99 %)
1 diff
(99.8 %id)
AA778837 liver and spleen .d 4307 to 4821 515 to 1       515/515
(100 %)
0 diff
(100 %id)
AI033951 liver and spleen .d 4379 to 4821 442 to 1       442/442
(100 %)
4 diff
(99.1 %id)
AI863258 brain, tumor, 5 pooled (see description) .d 4387 to 4822 440 to 5       436/440
(99 %)
0 diff
(100 %id)
AW965958   .d 4833 to 5469 1 to 633   tiling clone,   633/638
(99 %)
13 diff
(98.0 %id)
G43583   .d 4844 to 5043 1 to 200       200/200
(100 %)
0 diff
(100 %id)
G43585   .d 4844 to 5043 1 to 200       200/200
(100 %)
0 diff
(100 %id)
DB511474 testis .d 5248 to 5689 440 to 1       440/440
(100 %)
2 diff
(99.6 %id)
DB576615.
matches multiple genes
hypothalamus .d 5248 to 5709 462 to 1   tiling clone, also hits gene NIPA2 462/462
(100 %)
0 diff
(100 %id)
CB250660 Human Lung Epithelial cells, lung .d 5330 to 6120 808 to 17   AAA   792/806
(98 %)
2 diff
(99.8 %id)
BQ002490 Chondrosarcoma, Left Pelvis .d 5443 to 6120 695 to 17   AAA   679/679
(100 %)
1 diff
(99.9 %id)
TI_151809371   .d 5449 to 5812 80 to 444       365/1027
(35 %)
3 diff
(99.8 %id)
TI_154016973   .d 5453 to 6120 774 to 101   AAA   674/699
(96 %)
11 diff
(98.5 %id)
DB545793.
matches multiple genes
hippocampus .d 5455 to 5883 429 to 1     also hits gene NIPA2 429/430
(99 %)
1 diff
(99.8 %id)
DB528038.
matches multiple genes
testis .d 5456 to 5942 487 to 1     also hits gene NIPA2 487/487
(100 %)
0 diff
(100 %id)
DB550941.
matches multiple genes
hippocampus .d 5456 to 5967 512 to 1     also hits gene NIPA2 512/512
(100 %)
3 diff
(99.5 %id)
DB564908 hypothalamus .d 5456 to 5909 455 to 1       455/455
(100 %)
2 diff
(99.6 %id)
CX166947 human embryonic stem cells differentiated toan early endodermal cell type .d 5456 to 6071 32 to 648       617/648
(95 %)
6 diff
(99.1 %id)
DN918453   .d 5457 to 5979 1 to 523       523/523
(100 %)
4 diff
(99.3 %id)
AA829705 carcinoid, lung .d 5487 to 5831 345 to 1       345/345
(100 %)
0 diff
(100 %id)
DB306034 brain .d 5536 to 6050 515 to 1       515/515
(100 %)
0 diff
(100 %id)
W78756 liver and spleen .d 5539 to 5788 1 to 253   fully sequenced,   253/253
(100 %)
3 diff
(98.9 %id)
CA437387 lung, Metastatic Chondrosarcoma .d 5569 to 6120 568 to 17   AAA   552/552
(100 %)
3 diff
(99.5 %id)
AI630149 blood .d 5576 to 5751 1 to 176       176/176
(100 %)
0 diff
(100 %id)
FN072613 breast carcinoma .d 5595 to 5677 1 to 83       83/84
(98 %)
2 diff
(97.7 %id)
AI057523 parathyroid gland, parathyroid tumor .d 5596 to 6123 533 to 6       528/533
(99 %)
0 diff
(100 %id)
W81635 heart .d 5636 to 5773 1 to 138   fully sequenced,   138/138
(100 %)
0 diff
(100 %id)
BE857557 brain, glioblastoma (pooled) .d 5647 to 6174 528 to 1   tiling clone,   528/528
(100 %)
0 diff
(100 %id)
AI078371 liver and spleen .d 5671 to 6120 450 to 1       450/450
(100 %)
0 diff
(100 %id)
W81519 heart .d 5743 to 6120 378 to 1   fully sequenced,   378/378
(100 %)
0 diff
(100 %id)
W80491 liver and spleen .d 5758 to 6120 367 to 1   fully sequenced,   367/367
(100 %)
3 diff
(99.2 %id)
AI332894 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 5760 to 6127 368 to 1       368/368
(100 %)
0 diff
(100 %id)
DB545703.
matches multiple genes
hippocampus .d 5892 to 6372 481 to 1     also hits gene NIPA2 481/483
(99 %)
0 diff
(100 %id)
AI760486 Kidney .d 5902 to 6127 226 to 1       226/226
(100 %)
0 diff
(100 %id)
AW361735 colon .d 5972 to 6571 1 to 599       599/610
(98 %)
4 diff
(99.4 %id)
FN129381 breast carcinoma .d 5995 to 6084 1 to 92       92/94
(97 %)
5 diff
(94.7 %id)
CN421897 embryonic stem cells, cell lines H1, H7, andH9 .d 6015 to 6706 2 to 694   tiling clone,   693/694
(99 %)
6 diff
(99.2 %id)
FN056333 breast carcinoma .d 6174 to 6288 1 to 114       114/114
(100 %)
1 diff
(99.2 %id)
AK125784 testis .e 1 to 3470 2 to 3471 V370A tiling clone, available from FLJ,   3471/3471
(100 %)
4 diff
(99.9 %id)
AY763580   .e 1 to 3470 2 to 3471 V370A     3471/3471
(100 %)
4 diff
(99.9 %id)
DB060565 testis .e 1 to 570 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
CB268472 adipose .e 217 to 636 1 to 420       420/420
(100 %)
0 diff
(100 %id)
BG680471 skin, squamous cell carcinoma .e 295 to 1090 1 to 803       803/803
(100 %)
20 diff
(97.6 %id)
DB339203 testis .e 2942 to 3470 532 to 1       532/532
(100 %)
4 diff
(99.3 %id)
CB129743 Liver .f 1 to 553 1 to 552   tiling clone,   552/552
(100 %)
1 diff
(99.9 %id)
AI222431 pooled .f 541 to 951 411 to 1   tiling clone,   411/411
(100 %)
0 diff
(100 %id)
BM707512 eye, eye anterior segment .g 1 to 480 1 to 480   tiling clone,   480/480
(100 %)
6 diff
(98.8 %id)
BM791296 stomach .g 34 to 718 1 to 686   tiling clone,   686/686
(100 %)
1 diff
(99.9 %id)
BM673358 eye, eye anterior segment .g 801 to 1230 448 to 19   tiling clone, AAA   430/430
(100 %)
0 diff
(100 %id)
BU163891 eye, retinoblastoma .h 1 to 797 1 to 812   tiling clone,   812/846
(95 %)
20 diff
(97.7 %id)
TI_227714238   .h 389 to 982 716 to 123   AAA   594/965
(61 %)
10 diff
(99.0 %id)
CD364952 Alveolar Macrophage, lung .h 426 to 982 575 to 19   AAA   557/557
(100 %)
7 diff
(98.8 %id)
BU630727 cell lines, Chondrosarcoma .h 433 to 1128 714 to 19   tiling clone, AAA   696/696
(100 %)
2 diff
(99.8 %id)
AA954206 Kidney, kidney tumor .h 436 to 957 519 to 1       521/520
(100 %)
10 diff
(98.1 %id)
BQ009474 Chondrosarcoma, Left Pubic Bone .h 440 to 1128 705 to 17   AAA   689/689
(100 %)
7 diff
(99.0 %id)
AW511522 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .h 615 to 955 341 to 1       341/341
(100 %)
0 diff
(100 %id)
BF034494 adenocarcinoma, ovary .h 771 to 1430 1 to 664   tiling clone,   664/867
(76 %)
21 diff
(97.6 %id)
DA299446 hippocampus .i 48 to 542 87 to 581 exact tiling clone, capped   580/580
(100 %)
0 diff
(100 %id)
DA790516 brain .j -11 to 463 2 to 476   capped   475/475
(100 %)
2 diff
(99.6 %id)
DA196755 amygdala .j -10 to 550 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA094294 cerebellum .j -9 to 546 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA215162 brain .j -9 to 528 2 to 541   capped   540/540
(100 %)
3 diff
(99.5 %id)
DB236222 trachea .j -9 to 568 2 to 579 exact tiling clone, capped   578/578
(100 %)
0 diff
(100 %id)
DA196978 amygdala .j 48 to 466 83 to 501   capped   500/500
(100 %)
0 diff
(100 %id)
DA315173 hippocampus .j 48 to 524 97 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
DA317698 hippocampus .j 48 to 503 85 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DA322552 hippocampus .j 48 to 521 64 to 539   capped   538/538
(100 %)
2 diff
(99.7 %id)
DA447051 tongue, tumor tissue .j 48 to 534 83 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA455734 tongue, tumor tissue .j 48 to 526 97 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
BP287631 lung .j 48 to 533 97 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DA726947   .j 48 to 490 112 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
BP314770 mammary gland .j 48 to 532 97 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DB280089 uterus .j 48 to 498 85 to 535   capped   534/534
(100 %)
2 diff
(99.7 %id)
DB061035 testis .k 1 to 543 2 to 544 exact tiling clone, capped   543/543
(100 %)
1 diff
(99.9 %id)
BX094191 whole brain .l-u 1 to 527 1 to 526       526/526
(100 %)
1 diff
(99.9 %id)
R59891 whole brain .l-u 2 to 443 1 to 449   tiling clone,   449/449
(100 %)
14 diff
(96.9 %id)
AL707394 human skeletal muscle .l-u 104 to 702 1 to 599       599/599
(100 %)
5 diff
(99.2 %id)
CR619617 Placenta Cot 25-normalized .l-u 221 to 1861 1 to 1641 exact tiling clone,   1641/1641
(100 %)
0 diff
(100 %id)
AL547198 placenta, Placenta Cot 25-normalized .l-u 221 to 1236 1 to 1011 A5X Q81X fully sequenced,   1011/1011
(100 %)
10 diff
(99.1 %id)
AL572240 placenta, Placenta Cot 25-normalized .l-u 1206 to 1825 640 to 37   fully sequenced, AAA   604/604
(100 %)
0 diff
(100 %id)
R59892 whole brain .l-u 1447 to 1873 452 to 9   tiling clone,   444/453
(98 %)
0 diff
(100 %id)
DA316429 hippocampus .m 48 to 497 99 to 549 V14X D15G L16P L17P E18G ... tiling clone, capped   548/548
(100 %)
1 diff
(99.9 %id)
DB280314 uterus .n 48 to 510 84 to 548 A2L L11A S12V N13Q V14R ... tiling clone, capped   547/547
(100 %)
2 diff
(99.7 %id)
BG259095 embryonal carcinoma, cell line, testis .o 1 to 586 1 to 587 Q4R V5* tiling clone,   587/986
(59 %)
28 diff
(97.2 %id)
BX493051   .p 1 to 585 1 to 585 T76A tiling clone,   585/585
(100 %)
1 diff
(99.9 %id)
DA803276 brain .q 48 to 488 97 to 537 exact tiling clone, capped   536/536
(100 %)
0 diff
(100 %id)
DA708756   .r 1 to 582 2 to 582 exact tiling clone, capped   581/582
(99 %)
2 diff
(99.7 %id)
DA455825 tongue, tumor tissue .s 48 to 434 82 to 468 exact tiling clone, capped   467/467
(100 %)
0 diff
(100 %id)
BF732554 fibrotheoma, ovary .t 1 to 514 1 to 514 E31* tiling clone, Submitted on the opposite strand 514/514
(100 %)
12 diff
(97.7 %id)
TI_149302938   .u 1 to 801 861 to 62 S2P V30W E31R R32E I33F ... tiling clone, AAA   800/994
(80 %)
5 diff
(99.5 %id)
BF846379 lung_normal .va-u 1 to 378 19 to 396 exact tiling clone,   378/396
(95 %)
6 diff
(98.5 %id)
BF846538 lung_normal .va-u 1 to 121 19 to 139       121/139
(87 %)
6 diff
(95.7 %id)
AK125936 testis Gene CYFIP1, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
BU171709 melanotic melanoma, skin Gene CYFIP1, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l-u, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI