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Gene CYB561D1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
130 supporting clones for gene CYB561D1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_001134400.1   .a 1 to 4997 2 to 4998 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 4998/4998
(100 %)
0 diff
(100 %id)
AK294992 brain .a 35 to 1119 1 to 1085 exact tiling clone,   1085/1085
(100 %)
0 diff
(100 %id)
DC323512 brain .a 35 to 621 1 to 587       587/587
(100 %)
0 diff
(100 %id)
NM_182580.2   .b 1 to 4931 2 to 4932 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 4932/4932
(100 %)
0 diff
(100 %id)
DA802239 brain .b 4 to 560 2 to 558   tiling clone, capped   557/557
(100 %)
0 diff
(100 %id)
DA809762 brain .b 7 to 627 2 to 622   capped   621/621
(100 %)
1 diff
(99.9 %id)
DA722191   .b 13 to 592 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DB112917 thymus .b 13 to 575 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA332113 hippocampus .b 15 to 610 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
DA101553 cerebellum .b 16 to 605 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA851015 placenta .b 16 to 554 2 to 540   capped   539/539
(100 %)
2 diff
(99.7 %id)
DA458273 tongue, tumor tissue .b 20 to 597 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
AK096354   .b 21 to 3346 1 to 3321 exact tiling clone, available from FLJ,   3321/3321
(100 %)
11 diff
(99.7 %id)
DA743895   .b 22 to 585 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB291859 uterus .b 22 to 591 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
BC093683 Liver, PCR rescued clones .b 26 to 790 1 to 765 exact     765/765
(100 %)
0 diff
(100 %id)
BC111999 Liver, PCR rescued clones .b 26 to 790 1 to 765 exact     765/765
(100 %)
0 diff
(100 %id)
TI_891528781   .b 26 to 792 819 to 53 exact     767/1241
(61 %)
0 diff
(100 %id)
TI_891528784   .b 26 to 792 44 to 810 exact     767/1252
(61 %)
7 diff
(99.5 %id)
TI_1242417728   .b 26 to 466 440 to 2       439/1246
(35 %)
0 diff
(100 %id)
TI_1242418352   .b 26 to 794 825 to 57 exact   Submitted on the opposite strand 769/1253
(61 %)
0 diff
(100 %id)
DA726424   .b 30 to 580 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DB324882   .b 2830 to 3346 517 to 1   tiling clone,   517/517
(100 %)
0 diff
(100 %id)
DC376706 brain .c 1 to 569 1 to 570   tiling clone,   570/570
(100 %)
1 diff
(99.9 %id)
DB475642 hippocampus .c 20 to 483 1 to 464       464/464
(100 %)
0 diff
(100 %id)
AK299086   .c 45 to 957 1 to 913   tiling clone,   913/913
(100 %)
1 diff
(99.9 %id)
DC369812   .c 45 to 599 1 to 555       555/555
(100 %)
0 diff
(100 %id)
DC408129 thymus .c 48 to 603 1 to 556       556/557
(99 %)
3 diff
(99.5 %id)
DC416898 trachea .c 82 to 653 1 to 574       574/574
(100 %)
3 diff
(99.5 %id)
NM_001134402.1   .d 1 to 4804 1 to 4804 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 4804/4804
(100 %)
0 diff
(100 %id)
DA054191 cerebellum .d 18 to 566 2 to 550   tiling clone, capped   549/549
(100 %)
0 diff
(100 %id)
DB158898 thymus .d 49 to 636 2 to 590 R32X I33D R34P L35A H36P ... capped   589/589
(100 %)
1 diff
(99.9 %id)
TI_891527869   .d 182 to 665 1 to 484       484/1234
(39 %)
4 diff
(99.7 %id)
DA798129 brain .d 559 to 865 2 to 308   tiling clone, capped   307/307
(100 %)
0 diff
(100 %id)
BF750207 breast_normal .d 567 to 824 1 to 257       257/257
(100 %)
16 diff
(93.8 %id)
DA812599 ovary, tumor tissue .d 621 to 1216 2 to 596   tiling clone, capped   595/595
(100 %)
2 diff
(99.7 %id)
BF900991 marrow .d 830 to 1253 518 to 86     Submitted on the opposite strand 433/518
(83 %)
0 diff
(100 %id)
BX471864   .d 973 to 1539 1 to 565       565/565
(100 %)
7 diff
(98.8 %id)
BX471851   .d 975 to 1565 1 to 591       591/591
(100 %)
5 diff
(99.2 %id)
DA312989 hippocampus .d 1002 to 1547 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA318544 hippocampus .d 1093 to 1603 2 to 512   capped   511/511
(100 %)
0 diff
(100 %id)
DB108425 thymus .d 1101 to 1683 2 to 584   tiling clone, capped   583/583
(100 %)
0 diff
(100 %id)
BF356268 head_neck .d 1115 to 1523 140 to 551       412/551
(74 %)
6 diff
(99.0 %id)
DA722779   .d 1235 to 1780 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DB292685 uterus .d 1317 to 1900 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
CU445103 epidermis .d 1327 to 1960 1 to 634       634/644
(98 %)
6 diff
(99.1 %id)
AW501831 lymph .d 1412 to 1795 1 to 384       384/384
(100 %)
4 diff
(99.0 %id)
TI_154157004   .d 1419 to 1910 106 to 597       492/493
(99 %)
13 diff
(97.4 %id)
DB114412 thymus .d 1555 to 2096 2 to 544   capped   543/543
(100 %)
4 diff
(99.3 %id)
DA158666 amygdala .d 1620 to 2191 2 to 573   tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
BG253300 adenocarcinoma, cell line, Liver .d 1971 to 2698 1 to 733   tiling clone,   733/1141
(64 %)
18 diff
(98.5 %id)
BF759558 colon .d 2100 to 2279 197 to 17     Submitted on the opposite strand 181/197
(91 %)
0 diff
(100 %id)
DB003695 breast, tumor tissue .d 2195 to 2769 5 to 579   tiling clone, capped   575/578
(99 %)
6 diff
(99.0 %id)
DA170365 amygdala .d 2550 to 3078 2 to 534   tiling clone, capped   533/533
(100 %)
4 diff
(99.3 %id)
BF325904 amnion_normal .d 2680 to 3065 4 to 388       385/388
(99 %)
6 diff
(98.5 %id)
DB372021 ovary, tumor tissue .d 2699 to 3218 517 to 1       517/517
(100 %)
8 diff
(98.5 %id)
DB544461 hippocampus .d 2732 to 3219 1 to 486     Submitted on the opposite strand 486/486
(100 %)
2 diff
(99.6 %id)
AI963552 adenocarcinoma, Pancreas .d 2793 to 3218 427 to 2       426/427
(99 %)
0 diff
(100 %id)
BM720276 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 2850 to 3235 1 to 389   tiling clone,   389/392
(99 %)
5 diff
(98.8 %id)
AK092717   .d 2907 to 4798 1 to 1893   tiling clone, available from FLJ,   1893/1893
(100 %)
2 diff
(99.9 %id)
DA910612   .d 2908 to 3465 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DB343136 thymus .d 3004 to 3219 218 to 1       218/218
(100 %)
2 diff
(99.1 %id)
CB150164 Liver .d 3289 to 3444 1 to 156       156/156
(100 %)
0 diff
(100 %id)
BQ212850 melanotic melanoma, skin .d 3328 to 4158 24 to 862       839/863
(97 %)
9 diff
(99.0 %id)
BI857130 breast, mammary adenocarcinoma, cell line .d 3361 to 4228 1 to 864       864/864
(100 %)
32 diff
(96.3 %id)
TI_57186785   .d 3361 to 4228 56 to 919       864/864
(100 %)
32 diff
(96.3 %id)
R34753 whole brain .d 3422 to 3810 1 to 396       396/396
(100 %)
13 diff
(96.8 %id)
BM820503 stomach .d 3555 to 4194 1 to 639       639/639
(100 %)
1 diff
(99.9 %id)
BM820359 stomach .d 3555 to 4045 1 to 490       490/490
(100 %)
1 diff
(99.8 %id)
BQ675090 epidermoid carcinoma, cell line, salivary gland .d 3683 to 4550 1 to 875       875/995
(87 %)
15 diff
(98.5 %id)
BQ669302 epidermoid carcinoma, cell line, salivary gland .d 3683 to 4550 1 to 878       878/943
(93 %)
26 diff
(97.3 %id)
BQ668408 epidermoid carcinoma, cell line, salivary gland .d 3683 to 4527 1 to 849       849/958
(88 %)
22 diff
(97.8 %id)
W19408 lung .d 3891 to 4262 1 to 379       379/379
(100 %)
16 diff
(95.8 %id)
BX112103 lung .d 3892 to 4566 1 to 675   tiling clone,   675/675
(100 %)
3 diff
(99.6 %id)
H65545 liver and spleen .d 3913 to 4233 1 to 322       322/322
(100 %)
4 diff
(98.8 %id)
AA357424 Prostate .d 3975 to 4227 1 to 252       252/252
(100 %)
1 diff
(99.7 %id)
AL045239 testis .d 4004 to 4499 1 to 496       496/496
(100 %)
0 diff
(100 %id)
BU623611 cell lines, Enchondroma .d 4093 to 4795 721 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 703/703
(100 %)
1 diff
(99.9 %id)
AA005333 liver and spleen .d 4111 to 4496 1 to 387   fully sequenced,   387/387
(100 %)
5 diff
(98.8 %id)
BU624840 cell lines, Enchondroma .d 4156 to 4794 657 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 639/639
(100 %)
0 diff
(100 %id)
AA363938 pineal body .d 4193 to 4419 1 to 227       227/229
(99 %)
1 diff
(99.6 %id)
AW953785   .d 4194 to 4795 1 to 604       604/640
(94 %)
13 diff
(98.0 %id)
BQ773127 Chondrosarcoma Cell line .d 4206 to 4795 607 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 589/589
(100 %)
3 diff
(99.5 %id)
DB335238 breast, tumor tissue .d 4239 to 4794 557 to 1       557/557
(100 %)
1 diff
(99.9 %id)
BM929290 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 4256 to 4798 1 to 543   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 543/543
(100 %)
0 diff
(100 %id)
BM931697 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 4256 to 4798 1 to 543   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 543/543
(100 %)
0 diff
(100 %id)
BM930018 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 4256 to 4798 1 to 543   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 543/543
(100 %)
1 diff
(99.9 %id)
DB331413   .d 4263 to 4798 537 to 1       537/537
(100 %)
1 diff
(99.9 %id)
AI741458 pooled .d 4277 to 4798 522 to 1       522/522
(100 %)
0 diff
(100 %id)
AI990972 colon, colonic mucosa from 3 patients with Crohn'sdisease .d 4290 to 4795 508 to 3       506/508
(99 %)
0 diff
(100 %id)
N92753 lung .d 4328 to 4804 484 to 1       484/484
(100 %)
7 diff
(98.6 %id)
AI336387 lung .d 4337 to 4798 462 to 1       462/462
(100 %)
2 diff
(99.6 %id)
AI333310 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 4338 to 4794 458 to 2       457/458
(99 %)
0 diff
(100 %id)
AI741940 pooled .d 4346 to 4798 453 to 1       453/453
(100 %)
0 diff
(100 %id)
AI219873 pooled .d 4367 to 4799 433 to 1       433/433
(100 %)
0 diff
(100 %id)
TI_149272908   .d 4379 to 4795 544 to 128   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 417/920
(45 %)
8 diff
(99.2 %id)
BU675402 lung, Primary Lung Epithelial Cells .d 4379 to 4795 431 to 15   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 417/425
(98 %)
8 diff
(98.2 %id)
AI370771 uterus .d 4382 to 4804 423 to 1   tiling clone,   423/423
(100 %)
0 diff
(100 %id)
AI375149 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 4390 to 4804 427 to 13   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 415/415
(100 %)
0 diff
(100 %id)
AI366753 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 4402 to 4797 399 to 5       395/399
(98 %)
0 diff
(100 %id)
AA480143 ovarian tumor, ovary .d 4411 to 4795 16 to 399       384/400
(96 %)
3 diff
(99.3 %id)
AA442983 ovarian tumor, ovary .d 4411 to 4517 1 to 105   fully sequenced,   105/105
(100 %)
1 diff
(99.1 %id)
F32273 pectoral muscle (after mastectomy) .d 4412 to 4741 1 to 330       330/330
(100 %)
4 diff
(98.8 %id)
AA873124 pooled germ cell tumors .d 4415 to 4791 377 to 1       377/377
(100 %)
4 diff
(99.0 %id)
AI453113 pooled .d 4444 to 4795 374 to 23   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 352/352
(100 %)
5 diff
(98.6 %id)
AA005334 liver and spleen .d 4466 to 4798 337 to 1   fully sequenced,   337/337
(100 %)
4 diff
(98.9 %id)
AA458471 ovarian tumor, ovary .d 4487 to 4795 309 to 1   fully sequenced,   309/309
(100 %)
0 diff
(100 %id)
AA872158 pooled germ cell tumors .d 4505 to 4791 284 to 1       284/284
(100 %)
3 diff
(99.0 %id)
AI193319 lung .d 4521 to 4803 283 to 1       283/283
(100 %)
0 diff
(100 %id)
D25965   .d 4588 to 4795 1 to 207     Submitted on the opposite strand 207/210
(98 %)
2 diff
(99.1 %id)
F18069 pectoral muscle (after mastectomy) .d 4607 to 4799 1 to 194       194/194
(100 %)
2 diff
(99.0 %id)
NM_001134403.1   .e 1 to 5035 2 to 5036 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 5036/5036
(100 %)
0 diff
(100 %id)
DA092655 cerebellum .e 5 to 501 2 to 498 exact tiling clone, capped   497/497
(100 %)
0 diff
(100 %id)
DB280448 uterus .e 12 to 542 2 to 532 exact capped   531/531
(100 %)
0 diff
(100 %id)
BX647509 human uterus endothel primary cell culture .e 20 to 5028 1 to 5007 K122N tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 5007/5007
(100 %)
5 diff
(100.0 %id)
DB232771 trachea .e 22 to 575 2 to 555 exact capped   554/554
(100 %)
0 diff
(100 %id)
DR003558 hippocampus .e 36 to 658 1 to 624 exact     624/624
(100 %)
9 diff
(98.6 %id)
DN999946   .e 42 to 726 8 to 693 exact tiling clone,   686/693
(98 %)
9 diff
(98.8 %id)
DA327713 hippocampus .e 56 to 364 2 to 310   capped   309/309
(100 %)
0 diff
(100 %id)
NM_001134404.1   .f 1 to 5112 2 to 5113 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 5113/5113
(100 %)
0 diff
(100 %id)
AK128798 tongue, tumor tissue .f 36 to 5112 1 to 5075 exact tiling clone, available from FLJ,   5075/5075
(100 %)
6 diff
(99.9 %id)
DA456420 tongue, tumor tissue .f 37 to 612 2 to 577 exact capped   576/576
(100 %)
1 diff
(99.9 %id)
DC412381 kidney, tumor tissue .g 1 to 545 8 to 552 exact tiling clone,   552/552
(100 %)
1 diff
(99.9 %id)
AK303546 thymus .g 10 to 901 1 to 892   tiling clone,   892/892
(100 %)
1 diff
(99.9 %id)
DC409985 thymus .g 10 to 595 1 to 586       586/586
(100 %)
0 diff
(100 %id)
TI_2194576204   .g 15 to 743 781 to 53   tiling clone, Submitted on the opposite strand 729/1286
(56 %)
0 diff
(100 %id)
TI_2194577377   .g 15 to 743 783 to 55     Submitted on the opposite strand 729/1251
(58 %)
0 diff
(100 %id)
BC143308 Liver, PCR rescued clones .g 15 to 741 1 to 727       727/727
(100 %)
1 diff
(99.9 %id)
AK126707 cerebellum .h 1 to 3423 2 to 3419 exact tiling clone, available from FLJ,   3419/3419
(100 %)
10 diff
(99.8 %id)
DA112605 cerebellum .h 1 to 584 2 to 585 exact capped   584/584
(100 %)
0 diff
(100 %id)
DA806219 brain .h 6 to 570 2 to 566 L35S capped   565/565
(100 %)
1 diff
(99.9 %id)
DB299980 cerebellum .h 2944 to 3423 480 to 1   tiling clone,   480/483
(99 %)
3 diff
(99.4 %id)
AA381093   Gene CYB561D1, variant not shown         Suspected internal deletion, this clone was ignored    
AA995532 2 pooled tumors (clear cell type), Kidney Gene CYB561D1, variant not shown         Suspected internal deletion, this clone was ignored    
BE047734 brain, tumor, 5 pooled (see description) Gene CYB561D1, variant not shown         This clone was ignored    
AI863587 2 pooled tumors (clear cell type), Kidney Gene CYB561D1, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
BG470191 adenocarcinoma cell line, colon Gene CYB561D1, variant not shown         This clone was ignored    
BM083750 adenocarcinoma cell line, colon Gene CYB561D1, variant not shown         This clone was ignored    
BG696759 skin Gene CYB561D1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC