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Gene CCDC22TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
161 supporting clones for gene CCDC22 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BM147712 leukopheresis .a 1 to 354 1 to 354   tiling clone,   354/354
(100 %)
15 diff
(95.8 %id)
BM146102 leukopheresis .a 1 to 395 1 to 394       394/420
(93 %)
28 diff
(93.4 %id)
NM_014008.3   .a 3 to 2319 1 to 2317 exact RefSeq, AAA   2317/2317
(100 %)
0 diff
(100 %id)
DC340647 thalamus .a 6 to 552 1 to 547       547/547
(100 %)
0 diff
(100 %id)
DC425338   .a 6 to 552 1 to 548       548/548
(100 %)
1 diff
(99.9 %id)
DC384689   .a 6 to 576 1 to 571       571/571
(100 %)
0 diff
(100 %id)
DC406626 thymus .a 6 to 568 1 to 564       564/564
(100 %)
2 diff
(99.7 %id)
DC419545   .a 6 to 774 1 to 773       773/776
(99 %)
16 diff
(98.0 %id)
DC419701 uterus .a 7 to 462 10 to 465       456/456
(100 %)
2 diff
(99.6 %id)
DC361500 Kidney .a 8 to 547 1 to 540       540/540
(100 %)
0 diff
(100 %id)
BX377567 Placenta Cot 25-normalized .a 9 to 1041 1 to 1030       1030/1030
(100 %)
33 diff
(96.8 %id)
BG912845 anaplastic oligodendroglioma with 1p/19qloss, brain .a 17 to 655 1 to 639       639/642
(99 %)
1 diff
(99.9 %id)
BG490636 large cell carcinoma, lung .a 21 to 610 1 to 605       602/914
(65 %)
19 diff
(98.0 %id)
BX343612 Placenta Cot 25-normalized .a 25 to 839 18 to 831       814/831
(97 %)
7 diff
(99.2 %id)
BX362177   .a 25 to 886 18 to 878       861/878
(98 %)
10 diff
(98.9 %id)
AL708478 human skeletal muscle .a 31 to 462 1 to 432       432/432
(100 %)
3 diff
(99.4 %id)
DC347394 tongue, tumor tissue .a 32 to 596 1 to 565       565/565
(100 %)
0 diff
(100 %id)
DC354021 brain .a 32 to 635 1 to 604       604/604
(100 %)
1 diff
(99.9 %id)
BP283620 bone marrow .a 32 to 616 1 to 587       587/587
(100 %)
4 diff
(99.4 %id)
DC364803   .a 32 to 603 1 to 572       572/572
(100 %)
0 diff
(100 %id)
DC389774 Spleen .a 32 to 552 1 to 521       521/521
(100 %)
0 diff
(100 %id)
BP347929 brain .a 32 to 607 1 to 577       577/581
(99 %)
3 diff
(99.5 %id)
BP229444 brain .a 33 to 613 1 to 582       582/582
(100 %)
5 diff
(99.2 %id)
AL530531 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .a 41 to 1060 1 to 1015       1015/1031
(98 %)
37 diff
(96.5 %id)
AK291976 small intestine .a 42 to 2314 1 to 2273 Q412R     2273/2273
(100 %)
6 diff
(99.8 %id)
BM922423 leukocyte .a 42 to 535 7 to 498       492/1416
(34 %)
14 diff
(99.1 %id)
DC367398   .a 42 to 525 1 to 485       485/485
(100 %)
2 diff
(99.6 %id)
DC387668 small intestine .a 42 to 609 1 to 568       568/568
(100 %)
2 diff
(99.7 %id)
DC391974 Spleen .a 42 to 625 1 to 585       585/585
(100 %)
1 diff
(99.9 %id)
ES313600 beard hair, skin .a 47 to 468 1 to 422       422/422
(100 %)
0 diff
(100 %id)
BM923182 pooled colon, kidney, stomach .a 52 to 887 11 to 847       837/1044
(80 %)
34 diff
(96.8 %id)
CR995026 T-Lymphocytes .a 55 to 711 1 to 657       657/657
(100 %)
0 diff
(100 %id)
BC000972 Placenta, choriocarcinoma .a 56 to 2319 1 to 2264 exact tiling clone, available from MGC, AAA   2264/2264
(100 %)
0 diff
(100 %id)
CF141825 CNCAP(3)T-225 cell line, Prostate .a 57 to 513 8 to 464       457/464
(98 %)
6 diff
(98.8 %id)
TI_154172609   .a 57 to 650 80 to 675       596/600
(99 %)
19 diff
(96.9 %id)
DB026749 testis .a 58 to 604 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DB119295 thymus .a 60 to 621 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
BU156038 melanotic melanoma, skin .a 63 to 860 1 to 818       818/879
(93 %)
11 diff
(98.8 %id)
BX381104 Placenta Cot 25-normalized .a 66 to 1041 1 to 970       970/976
(99 %)
20 diff
(98.0 %id)
AL516953 brain, neuroblastoma, neuroblastoma cells .a 67 to 881 1 to 813       813/813
(100 %)
5 diff
(99.4 %id)
BI763517 pooled colon, kidney, stomach .a 67 to 895 1 to 837       840/914
(91 %)
36 diff
(96.1 %id)
BI838279 pooled pancreas and spleen .a 67 to 641 1 to 582       580/1063
(54 %)
15 diff
(98.6 %id)
TI_57152163   .a 67 to 895 117 to 953       840/1030
(81 %)
40 diff
(96.2 %id)
TI_57162917   .a 67 to 641 32 to 613       580/1094
(53 %)
15 diff
(98.7 %id)
BI912237 leukocyte .a 68 to 599 19 to 562       544/772
(70 %)
19 diff
(97.6 %id)
TI_57236250   .a 68 to 599 19 to 562       544/772
(70 %)
19 diff
(97.6 %id)
CN306941 embryonic stem cells, cell lines H1, H7, andH9 .a 69 to 315 1 to 247       247/247
(100 %)
0 diff
(100 %id)
DB102214 thymus .a 69 to 617 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA893147 skeletal muscle .a 74 to 541 2 to 469   capped   468/468
(100 %)
0 diff
(100 %id)
DR000379 fetal brain .a 76 to 672 8 to 605       598/605
(98 %)
8 diff
(98.7 %id)
BE538108 cervix .a 78 to 808 1 to 727       727/727
(100 %)
31 diff
(95.8 %id)
BQ109453 pooled lung and spleen .a 79 to 635 1 to 557       557/557
(100 %)
0 diff
(100 %id)
TI_57177927   .a 79 to 984 73 to 989       886/1000
(88 %)
28 diff
(97.2 %id)
BX333379 Neuroblastoma Cot 25-normalized .a 80 to 1045 1 to 958       958/961
(99 %)
16 diff
(98.4 %id)
BI766144 pooled lung and spleen .a 80 to 886 1 to 808       811/927
(87 %)
11 diff
(98.9 %id)
AJ005890 peripheral blood leukocytes .a 87 to 2314 1 to 2228 exact     2228/2228
(100 %)
1 diff
(100.0 %id)
BM924489 pooled colon, kidney, stomach .a 87 to 794 1 to 714       693/1142
(60 %)
23 diff
(98.0 %id)
BQ276363 carcinoma, cell line, Prostate .a 88 to 983 1 to 910       913/1038
(87 %)
26 diff
(97.5 %id)
BQ067672 pooled brain, lung, testis .a 94 to 887 1 to 796       796/1044
(76 %)
11 diff
(99.0 %id)
BI908689 leukocyte .a 108 to 883 1 to 772       772/773
(99 %)
9 diff
(98.9 %id)
TI_57234611   .a 108 to 883 37 to 808       772/809
(95 %)
14 diff
(98.3 %id)
BQ057037 lymph, lymphoma, cell line .a 110 to 1011 1 to 920       920/994
(92 %)
36 diff
(96.4 %id)
BQ898977 eye, normal pigmented retinal epithelium .a 113 to 631 1 to 527       526/1443
(36 %)
22 diff
(98.5 %id)
BF568638 epithelioid carcinoma cell line, Pancreas .a 171 to 829 1 to 673       671/675
(99 %)
37 diff
(94.6 %id)
BI161132 epithelioid carcinoma cell line, Pancreas .a 171 to 887 1 to 718       718/784
(91 %)
14 diff
(98.3 %id)
BI194734 epithelioid carcinoma cell line, Pancreas .a 171 to 930 1 to 777       751/982
(76 %)
36 diff
(96.4 %id)
BI193398 epithelioid carcinoma cell line, Pancreas .a 171 to 835 1 to 665       665/667
(99 %)
2 diff
(99.8 %id)
BC011675 Pancreas, epithelioid carcinoma .a 172 to 2314 1 to 2143 exact available from MGC, AAA   2143/2143
(100 %)
0 diff
(100 %id)
CV022931 mixed .a 173 to 809 1 to 636       636/636
(100 %)
6 diff
(99.1 %id)
BP360809 thalamus .a 197 to 774 1 to 579       579/582
(99 %)
4 diff
(99.4 %id)
BU857192 adenocarcinoma, cell line, breast .a 276 to 1137 1 to 868       868/919
(94 %)
9 diff
(99.1 %id)
BG744336 blood, natural killer cells, cell line .a 349 to 1200 1 to 851       851/858
(99 %)
14 diff
(98.4 %id)
BF894255 marrow .a 433 to 947 515 to 6     Submitted on the opposite strand 512/515
(99 %)
11 diff
(97.9 %id)
TI_57215370   .a 449 to 1131 27 to 708       682/708
(96 %)
7 diff
(99.1 %id)
BI754461 brain .a 455 to 1131 1 to 676       676/676
(100 %)
2 diff
(99.8 %id)
BQ918356 large cell carcinoma, lung .a 458 to 1390 1 to 934       934/957
(97 %)
15 diff
(98.5 %id)
CR611380 HeLa cells Cot 25-normalized .a 533 to 2277 1 to 1745       1745/1745
(100 %)
0 diff
(100 %id)
BX362985   .a 534 to 1351 1 to 814   fully sequenced,   814/814
(100 %)
13 diff
(98.5 %id)
BI821114 pooled brain, lung, testis .a 632 to 1420 1 to 790       790/790
(100 %)
6 diff
(99.3 %id)
TI_57198415   .a 634 to 1420 33 to 820       788/820
(96 %)
12 diff
(98.6 %id)
BE542374 cervix .a 707 to 1394 1 to 687       687/698
(98 %)
27 diff
(96.2 %id)
CK906295 Islets of Langerhans, Pancreas .a 787 to 1363 1 to 577       577/577
(100 %)
0 diff
(100 %id)
BM126841 Islets of Langerhans, Pancreas .a 803 to 1355 1 to 553       553/553
(100 %)
0 diff
(100 %id)
CR598915 B cells (Ramos cell line) Cot 25-normalized .a 809 to 2282 1 to 1474       1474/1474
(100 %)
0 diff
(100 %id)
BX342577   .a 809 to 1532 1 to 723   fully sequenced,   723/723
(100 %)
4 diff
(99.5 %id)
BQ073205 epidermoid carcinoma, cell line, lung .a 984 to 1916 1 to 939       939/1001
(93 %)
21 diff
(98.0 %id)
BX283096 epidermoid carcinoma, cell line, lung .a 995 to 1523 1 to 529       529/529
(100 %)
0 diff
(100 %id)
CN484143 eye .a 1018 to 1542 1 to 525       525/525
(100 %)
4 diff
(99.3 %id)
BX401849   .a 1032 to 1857 823 to 1       827/823
(100 %)
4 diff
(99.6 %id)
BG470076 adenocarcinoma cell line, colon .a 1051 to 1793 1 to 750       750/750
(100 %)
12 diff
(98.4 %id)
BU857824 adenocarcinoma, cell line, breast .a 1116 to 1942 1 to 827       827/919
(89 %)
10 diff
(99.0 %id)
BX333378 Neuroblastoma Cot 25-normalized .a 1153 to 2284 1117 to 1       1117/1136
(98 %)
18 diff
(98.5 %id)
BQ689457 ductal carcinoma, cell line, Pancreas .a 1168 to 2068 1 to 904       904/904
(100 %)
7 diff
(99.3 %id)
AL530530 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .a 1181 to 2298 1117 to 1       1117/1132
(98 %)
34 diff
(97.0 %id)
BQ049801 lymph, lymphoma, cell line .a 1185 to 2065 10 to 904       895/1063
(84 %)
26 diff
(97.6 %id)
BX381103 Placenta Cot 25-normalized .a 1214 to 2276 1057 to 1       1057/1057
(100 %)
14 diff
(98.7 %id)
BF771974 epid_tumor .a 1297 to 1733 1 to 437       437/437
(100 %)
11 diff
(97.5 %id)
BF771979 epid_tumor .a 1301 to 1700 1 to 400       400/400
(100 %)
9 diff
(97.8 %id)
BF771977 epid_tumor .a 1304 to 1703 1 to 400       400/400
(100 %)
7 diff
(98.3 %id)
BX362984   .a 1320 to 2277 952 to 1   fully sequenced,   952/952
(100 %)
15 diff
(98.5 %id)
BG744904 blood, natural killer cells, cell line .a 1333 to 2239 904 to 1       904/927
(97 %)
13 diff
(98.6 %id)
AA299443 uterus .a 1353 to 1621 1 to 272       270/274
(98 %)
3 diff
(99.0 %id)
BX487090   .a 1380 to 2029 655 to 3     Submitted on the opposite strand 653/655
(99 %)
3 diff
(99.6 %id)
BX362176   .a 1382 to 2280 903 to 6       898/903
(99 %)
0 diff
(100 %id)
BX394799 Neuroblastoma Cot 25-normalized .a 1391 to 2262 868 to 1       868/868
(100 %)
12 diff
(98.7 %id)
TI_149310663   .a 1391 to 2314 1005 to 89   AAA   919/972
(94 %)
20 diff
(98.0 %id)
BX343611 Placenta Cot 25-normalized .a 1409 to 2259 851 to 1       851/851
(100 %)
10 diff
(98.9 %id)
AL561691 brain, neuroblastoma, neuroblastoma cells .a 1425 to 2287 870 to 10       861/870
(98 %)
7 diff
(99.2 %id)
BU194466 melanotic melanoma, skin .a 1434 to 2137 11 to 718       708/947
(74 %)
15 diff
(98.5 %id)
BX329885 Placenta Cot 25-normalized .a 1448 to 2311 868 to 1       868/868
(100 %)
25 diff
(97.2 %id)
BX342576   .a 1471 to 2279 813 to 3   fully sequenced,   811/813
(99 %)
3 diff
(99.7 %id)
BU688940 lung .a 1540 to 2314 794 to 19   AAA   776/776
(100 %)
1 diff
(99.9 %id)
BI043577 ovary .a 1555 to 2046 1 to 488       488/488
(100 %)
8 diff
(98.4 %id)
AW801190 uterus .a 1581 to 1902 331 to 9       323/331
(97 %)
2 diff
(99.4 %id)
BE268586 Burkitt lymphoma, lymph .a 1609 to 2310 11 to 703       693/747
(92 %)
22 diff
(97.1 %id)
BE268178 Burkitt lymphoma, lymph .a 1618 to 2279 1 to 656       656/727
(90 %)
21 diff
(97.2 %id)
BQ345700 nervous_tumor .a 1629 to 2164 547 to 14       534/547
(97 %)
1 diff
(99.9 %id)
BM994660 lung, Metastatic Chondrosarcoma .a 1650 to 2314 682 to 19   AAA   664/664
(100 %)
1 diff
(99.9 %id)
BQ346160 nervous_tumor .a 1660 to 2164 525 to 22       504/525
(96 %)
2 diff
(99.7 %id)
AW192513 adenocarcinoma, Pancreas .a 1688 to 2314 661 to 35   AAA   627/627
(100 %)
2 diff
(99.7 %id)
BE780278 eye, retinoblastoma .a 1691 to 2305 1 to 620       620/630
(98 %)
10 diff
(98.5 %id)
BF880814 lung_tumor .a 1716 to 2150 10 to 444       435/444
(97 %)
8 diff
(98.2 %id)
AA133706 colon, tumor .a 1726 to 1973 1 to 259   fully sequenced,   259/259
(100 %)
1 diff
(99.7 %id)
BE045372 carcinoid, lung .a 1736 to 2051 316 to 1       316/316
(100 %)
0 diff
(100 %id)
AW082807 colon, moderately differentiated adenocarcinoma .a 1749 to 2315 617 to 50   AAA   568/569
(99 %)
49 diff
(91.4 %id)
BM126585 Islets of Langerhans, Pancreas .a 1757 to 2315 559 to 1       559/559
(100 %)
0 diff
(100 %id)
BF685002 leiomyosarcoma cell line, uterus .a 1760 to 2319 1 to 561   AAA   561/561
(100 %)
5 diff
(99.2 %id)
AW662183 2 pooled high-grade transitional celltumors, genitourinary tract .a 1763 to 2181 419 to 1       419/419
(100 %)
9 diff
(97.9 %id)
BI031622 marrow .a 1821 to 2126 1 to 306       306/306
(100 %)
3 diff
(99.1 %id)
AI652925 pooled germ cell tumors .a 1823 to 2321 500 to 2       499/500
(99 %)
0 diff
(100 %id)
BG059790 brain, glioblastoma without EGFR amplification .a 1823 to 2315 497 to 5       493/497
(99 %)
0 diff
(100 %id)
BF224247 carcinoid, lung .a 1835 to 2314 503 to 24   AAA   480/480
(100 %)
7 diff
(98.6 %id)
BE503433 pooled germ cell tumors .a 1856 to 2314 459 to 1       459/459
(100 %)
0 diff
(100 %id)
BE644748 carcinoid, lung .a 1856 to 2315 462 to 3       460/462
(99 %)
0 diff
(100 %id)
CK906294 Islets of Langerhans, Pancreas .a 1868 to 2315 448 to 1       448/448
(100 %)
16 diff
(96.5 %id)
BG055785 anaplastic oligodendroglioma, brain .a 1869 to 2315 446 to 2       445/446
(99 %)
8 diff
(98.3 %id)
CF131536 Chondrosarcoma Lung Metastasis cell lines, lung .a 1869 to 2319 1 to 451   AAA   451/451
(100 %)
0 diff
(100 %id)
BF063010 colon, colon tumor, RER+ .a 1877 to 2051 175 to 1       175/175
(100 %)
5 diff
(97.2 %id)
BG055823 anaplastic oligodendroglioma, brain .a 1892 to 2315 425 to 2       424/428
(99 %)
7 diff
(98.4 %id)
AA826354 Kidney, kidney tumor .a 1898 to 2314 417 to 1       417/417
(100 %)
1 diff
(99.8 %id)
BG055974 anaplastic oligodendroglioma, brain .a 1904 to 2315 413 to 2       412/413
(99 %)
1 diff
(99.8 %id)
AA133584 colon, tumor .a 1911 to 2314 406 to 1   fully sequenced,   404/404
(100 %)
6 diff
(98.6 %id)
AI093641 pooled .a 1925 to 2315 387 to 1       387/387
(100 %)
4 diff
(99.0 %id)
BU609157 Human Lung Epithelial cells, lung .a 1926 to 2314 407 to 19   AAA   389/397
(97 %)
0 diff
(100 %id)
AI885395 anaplastic oligodendroglioma, brain .a 1948 to 2315 401 to 34   AAA   368/368
(100 %)
6 diff
(98.4 %id)
AI885415 anaplastic oligodendroglioma, brain .a 1948 to 2314 406 to 40   AAA   367/367
(100 %)
3 diff
(99.2 %id)
AI439692 lymph node, lymphoma, follicular mixed small and largecell .a 1985 to 2314 346 to 17   AAA   330/330
(100 %)
0 diff
(100 %id)
AW771280 Kidney .a 2029 to 2311 293 to 11   AAA   283/283
(100 %)
0 diff
(100 %id)
AW449554   .a 2064 to 2314 268 to 18   AAA   251/251
(100 %)
0 diff
(100 %id)
AI355422 esophagus, squamous cell carcinoma .a 2078 to 2314 268 to 32   AAA   237/237
(100 %)
1 diff
(99.6 %id)
AA918677 Kidney .a 2122 to 2315 195 to 2       194/195
(99 %)
0 diff
(100 %id)
AW087463 colon, moderately differentiated adenocarcinoma .a 2201 to 2314 135 to 22   AAA   114/114
(100 %)
0 diff
(100 %id)
CR610841 B cells (Ramos cell line) Cot 25-normalized .b 1 to 1842 1 to 1842 exact tiling clone,   1842/1842
(100 %)
0 diff
(100 %id)
BX401850   .b 12 to 826 11 to 824       814/824
(98 %)
7 diff
(99.2 %id)
BX370705   .b 691 to 1583 1 to 893       893/893
(100 %)
32 diff
(96.5 %id)
AK296911 tongue, tumor tissue .c 1 to 1546 1 to 1546   tiling clone,   1546/1546
(100 %)
0 diff
(100 %id)
AL541104 placenta .c 768 to 1740 24 to 997   tiling clone,   974/1037
(93 %)
14 diff
(98.7 %id)
AL568737 placenta .c 1804 to 2816 1008 to 1   tiling clone,   1008/1008
(100 %)
17 diff
(98.4 %id)
BM458673 lymph, lymphoma, cell line .d 1 to 733 1 to 735 V22A V205I T207* tiling clone,   735/1006
(73 %)
6 diff
(99.5 %id)
DA332103 hippocampus .e 1 to 574 2 to 575 exact tiling clone, capped   574/574
(100 %)
0 diff
(100 %id)
BF822333 kidney_tumor .e 546 to 721 1 to 179   tiling clone,   179/179
(100 %)
8 diff
(95.6 %id)
AW750790 colon_normal .f 1 to 407 9 to 422 E2A L11F Q14S W15I E16G ... tiling clone,   414/422
(98 %)
38 diff
(91.0 %id)
TI_159677145   .g 1 to 581 56 to 638 A2D Y3N Q5R R6A I7S ... tiling clone, AAA   583/638
(91 %)
6 diff
(99.1 %id)
BG484286 lung .h 1 to 702 1 to 698 exact tiling clone,   698/794
(87 %)
13 diff
(98.4 %id)
AV704421 adrenal gland Gene CCDC22, variant not shown         Suspected internal deletion, this clone was ignored    
AK298264 Kidney Gene CCDC22, variant not shown         Suspected internal deletion, this clone was ignored    
AK316375 testis Gene CCDC22, variant not shown         Suspected internal deletion, this clone was ignored    
DB357619 whole embryo, mainly head Gene CCDC22, variant not shown         This clone was ignored    
DA570821 whole embryo, mainly head Gene CCDC22, variant not shown       capped This clone was ignored    
BF062965 colon, colon tumor, RER+ Gene CCDC22, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BI857121 breast, mammary adenocarcinoma, cell line Gene CCDC22, variant not shown         This clone was ignored    
TI_57186776   Gene CCDC22, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI