To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene CXCR6TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
40 supporting clones for gene CXCR6 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BG113134 Bone, osteosarcoma, cell line .a-u 1 to 731 726 to 1   tiling clone, Submitted on the opposite strand 726/942
(77 %)
36 diff
(96.2 %id)
U73531   .a-u 2 to 2806 1 to 2804 D25A tiling clone,   2804/2804
(100 %)
6 diff
(99.8 %id)
CR601642 Placenta Cot 25-normalized .b 1 to 2242 1 to 2242 exact tiling clone,   2242/2242
(100 %)
0 diff
(100 %id)
BX398107 Placenta Cot 25-normalized .b 1 to 1128 1 to 1116   fully sequenced,   1116/1116
(100 %)
18 diff
(98.4 %id)
BX398106 Placenta Cot 25-normalized .b 1104 to 2193 1129 to 48   fully sequenced, AAA   1082/1109
(97 %)
0 diff
(100 %id)
BM919012 pooled pancreas and spleen .c 1 to 720 20 to 745   tiling clone,   726/1126
(64 %)
25 diff
(97.8 %id)
DN995857 breast cancer, Mammary gland (cancer tissue) .c 7 to 607 1 to 602       602/602
(100 %)
6 diff
(99.1 %id)
NM_006564.1   .c 10 to 1962 1 to 1953 exact RefSeq,   1953/1953
(100 %)
0 diff
(100 %id)
Y13248 blood .c 10 to 1962 1 to 1953 exact tiling clone,   1953/1953
(100 %)
0 diff
(100 %id)
BM543622 brain, hippocampus .c 12 to 699 23 to 724       702/1119
(62 %)
18 diff
(98.4 %id)
BC033584 Pancreas, Spleen, adult pooled .c 59 to 1956 1 to 1898 exact tiling clone, available from MGC, AAA   1898/1898
(100 %)
2 diff
(99.9 %id)
BI837704 pooled pancreas and spleen .c 59 to 708 1 to 650       650/650
(100 %)
2 diff
(99.7 %id)
AK313754 Spleen .d 1 to 1183 2 to 1184 exact tiling clone,   1184/1184
(100 %)
1 diff
(100.0 %id)
DA942959 Spleen .d 1 to 552 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
U73530   .d 20 to 154 1 to 135       135/135
(100 %)
1 diff
(99.3 %id)
TI_57165406   .d 133 to 773 45 to 684       640/684
(93 %)
6 diff
(99.2 %id)
U73529   .d 133 to 2021 9 to 1897 exact tiling clone, AAA   1889/1897
(99 %)
6 diff
(99.7 %id)
TI_1948122260   .d 145 to 991 116 to 960   fully sequenced,   845/960
(88 %)
22 diff
(97.8 %id)
TI_1948122440   .d 145 to 717 120 to 698   fully sequenced,   579/698
(82 %)
5 diff
(99.3 %id)
TI_1948122609   .d 145 to 685 119 to 655   fully sequenced,   537/655
(81 %)
5 diff
(99.3 %id)
CD246174 mixed .d 147 to 716 1 to 577       577/946
(60 %)
17 diff
(98.3 %id)
CO959185 mixed .d 154 to 510 1 to 356   fully sequenced,   356/356
(100 %)
7 diff
(98.1 %id)
AF007545   .d 155 to 1183 1 to 1029 exact     1029/1029
(100 %)
0 diff
(100 %id)
CV029555 mixed .d 155 to 809 1 to 654       654/654
(100 %)
1 diff
(99.9 %id)
BI051080 placenta_normal .d 372 to 656 287 to 3       285/287
(99 %)
0 diff
(100 %id)
CO959180 mixed .d 480 to 1183 721 to 25   fully sequenced,   697/721
(96 %)
8 diff
(98.9 %id)
TI_1948122610   .d 655 to 1188 657 to 122   fully sequenced,   536/657
(81 %)
21 diff
(96.9 %id)
CR624554 Placenta Cot 25-normalized .d 660 to 2007 1 to 1348       1348/1348
(100 %)
0 diff
(100 %id)
BX398345 Placenta Cot 25-normalized .d 660 to 1610 1 to 946   fully sequenced,   946/946
(100 %)
2 diff
(99.8 %id)
TI_1948122441   .d 687 to 1188 619 to 118   fully sequenced,   502/619
(81 %)
5 diff
(99.2 %id)
TI_1948122261   .d 961 to 1188 354 to 122   fully sequenced,   233/354
(65 %)
5 diff
(98.6 %id)
FN095840 breast carcinoma .d 1101 to 1177 1 to 79       79/80
(98 %)
3 diff
(96.3 %id)
AA044449 uterus .d 1257 to 1468 1 to 213       213/217
(98 %)
6 diff
(97.3 %id)
BX110105 uterus .d 1258 to 2021 1 to 764   AAA   764/764
(100 %)
1 diff
(99.9 %id)
BX399772 Placenta Cot 25-normalized .d 1299 to 2024 1 to 726       726/726
(100 %)
4 diff
(99.5 %id)
BQ010576 placenta .d 1534 to 2021 505 to 18   AAA   488/488
(100 %)
3 diff
(99.4 %id)
R92239 liver and spleen .d 1540 to 1916 1 to 385   fully sequenced,   385/385
(100 %)
13 diff
(96.7 %id)
R94283 liver and spleen .d 1542 to 1942 7 to 410       404/412
(98 %)
17 diff
(95.9 %id)
AA703025 liver and spleen .d 1542 to 2021 479 to 1       479/482
(99 %)
6 diff
(98.8 %id)
AA702346 liver and spleen .d 1578 to 2016 445 to 7       439/445
(98 %)
0 diff
(100 %id)
BX398344 Placenta Cot 25-normalized .d 1580 to 2007 418 to 1   fully sequenced,   418/418
(100 %)
5 diff
(98.9 %id)
AA044602 uterus .d 1592 to 2021 432 to 1       432/432
(100 %)
4 diff
(99.1 %id)
AA977724 2 pooled tumors (clear cell type), Kidney .d 1618 to 2024 412 to 6       407/412
(98 %)
0 diff
(100 %id)
AI559967 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .d 1624 to 2026 429 to 27   tiling clone, AAA   403/403
(100 %)
0 diff
(100 %id)
AA876343 2 pooled tumors (clear cell type), Kidney .d 1665 to 2024 365 to 6       360/365
(98 %)
0 diff
(100 %id)
FN171596 breast carcinoma .d 1728 to 1828 1 to 101       101/101
(100 %)
0 diff
(100 %id)
BX370139 Placenta Cot 25-normalized .d 1886 to 2024 1 to 141       141/147
(95 %)
3 diff
(98.0 %id)
R91916 liver and spleen .d 1886 to 2030 154 to 1   fully sequenced,   154/154
(100 %)
1 diff
(99.4 %id)
? Gene Summary Gene on genome mRNA:.a-u, .b, .c, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI