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Gene CXCL3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
50 supporting clones for gene CXCL3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BM828712 Ascites, stomach .a 1 to 603 1 to 603 exact tiling clone,   603/603
(100 %)
1 diff
(99.9 %id)
CN263767 embryonic stem cells, cell lines H1, H7, andH9 .a 34 to 625 1 to 594       594/594
(100 %)
2 diff
(99.7 %id)
NM_002090.2   .a 34 to 1184 1 to 1151   RefSeq, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 1151/1151
(100 %)
0 diff
(100 %id)
CB129465 Liver .a 77 to 564 1 to 488       488/488
(100 %)
3 diff
(99.4 %id)
BG506634 lung .a 117 to 806 1 to 687       687/688
(99 %)
10 diff
(98.6 %id)
BG570617 lung .a 117 to 863 1 to 745       748/745
(100 %)
41 diff
(94.5 %id)
CB128389 Liver .a 117 to 594 1 to 478       478/478
(100 %)
1 diff
(99.8 %id)
BC016308 lung .a 118 to 1184 5 to 1071   available from MGC, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 1067/1068
(99 %)
3 diff
(99.8 %id)
BC065743 lung .a 118 to 1183 5 to 1070   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 1066/1067
(99 %)
1 diff
(100.0 %id)
M36821 lymphocyte and monocyte .a 120 to 1184 1 to 1064       1064/1064
(100 %)
8 diff
(99.3 %id)
CA309305 Alveolar Macrophage, lung .a 132 to 838 725 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 707/720
(98 %)
2 diff
(99.8 %id)
CR591181 HeLa cells Cot 25-normalized .a 135 to 1182 1 to 1048       1048/1048
(100 %)
0 diff
(100 %id)
BX384694   .a 136 to 1031 1 to 896       896/924
(96 %)
24 diff
(97.5 %id)
BQ215959 large cell carcinoma, lung .a 156 to 1040 1 to 889       889/891
(99 %)
33 diff
(96.3 %id)
X53800   .a 162 to 1149 1 to 988       988/988
(100 %)
0 diff
(100 %id)
CV028919 mixed .a 196 to 518 1 to 323       323/504
(64 %)
1 diff
(99.9 %id)
BU626899 Alveolar Macrophage, lung .a 460 to 1184 740 to 19   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 722/722
(100 %)
2 diff
(99.8 %id)
CD743042 Alveolar Macrophage, lung .a 460 to 1184 742 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 724/724
(100 %)
1 diff
(99.9 %id)
BG570567 lung .b 1 to 631 1 to 633 E99G L100T R101A C102L Q103P ... tiling clone,   633/634
(99 %)
5 diff
(99.3 %id)
CD520079 pooled .b 281 to 959 1 to 691   tiling clone,   691/765
(90 %)
15 diff
(98.1 %id)
BX352546   .b 283 to 1163 890 to 3       888/890
(99 %)
20 diff
(97.8 %id)
CD370075 Alveolar Macrophage, lung .b 366 to 1166 818 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 800/802
(99 %)
0 diff
(100 %id)
BX115250 carcinoid, lung .b 494 to 1163 686 to 17   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 670/675
(99 %)
0 diff
(100 %id)
CA309555 Alveolar Macrophage, lung .b 495 to 1166 690 to 19   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 672/672
(100 %)
4 diff
(99.5 %id)
BX390861   .b 594 to 1168 1 to 574       574/580
(98 %)
5 diff
(99.2 %id)
AW079760 colon, moderately differentiated adenocarcinoma .b 646 to 1166 536 to 16   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 521/521
(100 %)
4 diff
(99.3 %id)
CA748708 Alveolar Macrophage, lung .b 662 to 1163 524 to 23   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 502/505
(99 %)
0 diff
(100 %id)
AI829424 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 770 to 1052 283 to 1       283/283
(100 %)
0 diff
(100 %id)
AW593590 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .b 821 to 1052 234 to 1       234/234
(100 %)
5 diff
(97.9 %id)
TI_159723297   .b 829 to 1166 414 to 78   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 337/1000
(33 %)
1 diff
(99.9 %id)
CA944972 Human Lung Epithelial cells, lung .b 829 to 1166 355 to 19   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 337/346
(97 %)
1 diff
(99.8 %id)
BM128087 Islets of Langerhans, Pancreas .b 1029 to 1160 1 to 132       132/132
(100 %)
0 diff
(100 %id)
BM128099 Islets of Langerhans, Pancreas .b 1029 to 1160 1 to 132       132/132
(100 %)
0 diff
(100 %id)
AK311367 lung .c 1 to 1641 1 to 1642 exact tiling clone,   1642/1642
(100 %)
3 diff
(99.9 %id)
DC358197 lung .c 1 to 295 1 to 295       295/295
(100 %)
0 diff
(100 %id)
AK307064 bladder .c 115 to 1300 1 to 1182       1182/1182
(100 %)
7 diff
(99.5 %id)
DC301251 bladder .c 115 to 681 1 to 567       567/567
(100 %)
3 diff
(99.5 %id)
DC419412 uterus, tumor tissue .c 119 to 686 1 to 569       569/569
(100 %)
1 diff
(99.9 %id)
CA314555 Human Lung Epithelial cells, lung .c 564 to 1246 701 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 683/683
(100 %)
1 diff
(99.9 %id)
TI_154089690   .c 697 to 1246 643 to 94   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 550/550
(100 %)
1 diff
(99.9 %id)
CA433812 mixed .c 719 to 1246 546 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 528/528
(100 %)
1 diff
(99.9 %id)
AW662891 pooled .c 833 to 1249 417 to 1       417/417
(100 %)
2 diff
(99.6 %id)
N55413 multiple sclerosis lesions .c 1026 to 1160 1 to 135       135/135
(100 %)
2 diff
(98.6 %id)
T24494   .c 1220 to 1391 1 to 175   tiling clone,   175/175
(100 %)
1 diff
(99.5 %id)
DC419238 stomach, tumor tissue .d 1 to 569 1 to 569 exact tiling clone,   569/569
(100 %)
0 diff
(100 %id)
BI832837 pooled pancreas and spleen .d 40 to 823 1 to 783 exact tiling clone,   783/783
(100 %)
1 diff
(99.9 %id)
TI_57162505   .d 40 to 823 34 to 816 exact     783/816
(95 %)
7 diff
(99.2 %id)
BQ320821 colon .e-u 1 to 264 9 to 269 P7R T8Q A9P P10R L11S ... tiling clone,   261/275
(94 %)
6 diff
(97.9 %id)
T29169 blood, white blood cells .e-u 48 to 287 1 to 240   tiling clone,   240/240
(100 %)
1 diff
(99.6 %id)
BF106374 lung Gene CXCL3, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI