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Gene CUBNTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
161 supporting clones for gene CUBN back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BP271329 small intestine .a 1 to 582 1 to 583   tiling clone,   583/583
(100 %)
1 diff
(99.9 %id)
NM_001081.3   .a 1 to 11933 1 to 11933 exact RefSeq,   11933/11933
(100 %)
0 diff
(100 %id)
CD655634 Embryonic Stem cells .a 17 to 779 1 to 761       761/863
(88 %)
16 diff
(98.2 %id)
AF034611   .a 27 to 11360 1 to 11334   tiling clone, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 11334/11334
(100 %)
18 diff
(99.9 %id)
CV573188 cornea, eye .a 277 to 865 1 to 589   tiling clone,   589/589
(100 %)
1 diff
(99.9 %id)
DB228502 trachea .a 1123 to 1676 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
AL698084 human skeletal muscle .a 2099 to 2840 1 to 731       731/735
(99 %)
25 diff
(96.6 %id)
AI628059 Kidney .a 2118 to 2693 585 to 10       576/585
(98 %)
2 diff
(99.7 %id)
BX494088   .a 2138 to 2563 1 to 426       426/426
(100 %)
9 diff
(97.9 %id)
AI640489 Kidney .a 2163 to 2677 542 to 30       513/653
(78 %)
13 diff
(98.1 %id)
BP270637 small intestine .a 2441 to 3016 1 to 579       579/582
(99 %)
5 diff
(99.2 %id)
DA627245 Kidney .a 3208 to 3712 2 to 506   capped   505/505
(100 %)
0 diff
(100 %id)
AL698636 human skeletal muscle .a 3218 to 3893 1 to 677       677/677
(100 %)
2 diff
(99.8 %id)
BP270790 small intestine .a 3356 to 3936 1 to 582   tiling clone,   582/582
(100 %)
2 diff
(99.7 %id)
BX951704   .a 3976 to 4359 1 to 384       384/384
(100 %)
1 diff
(99.8 %id)
CD610496   .a 5844 to 6414 14 to 584   tiling clone,   571/584
(97 %)
8 diff
(98.7 %id)
CD610487   .a 5852 to 6411 560 to 1       560/562
(99 %)
3 diff
(99.5 %id)
CD610488   .a 5860 to 6414 1 to 555       555/555
(100 %)
3 diff
(99.5 %id)
CD610495   .a 5860 to 6411 550 to 1       550/550
(100 %)
4 diff
(99.3 %id)
CD610498   .a 6318 to 7052 1 to 739       743/752
(98 %)
15 diff
(98.1 %id)
BX491982   .a 6343 to 6895 1 to 553       553/553
(100 %)
1 diff
(99.9 %id)
CD610494   .a 6367 to 7025 1 to 658       658/658
(100 %)
3 diff
(99.6 %id)
CD610493   .a 6371 to 7161 792 to 1       792/792
(100 %)
6 diff
(99.3 %id)
CD610484   .a 6652 to 7161 1 to 510       510/511
(99 %)
4 diff
(99.3 %id)
CD610485   .a 6652 to 7161 1 to 509       509/510
(99 %)
5 diff
(99.1 %id)
CD610486   .a 6652 to 7161 510 to 1       510/510
(100 %)
3 diff
(99.5 %id)
CD610502   .a 6652 to 7301 1 to 650       650/650
(100 %)
1 diff
(99.9 %id)
CD610497   .a 6762 to 7581 820 to 1       820/820
(100 %)
9 diff
(99.0 %id)
CD610491   .a 6797 to 7161 365 to 1       365/365
(100 %)
2 diff
(99.5 %id)
CD610492   .a 6871 to 7158 1 to 287       287/290
(98 %)
11 diff
(96.3 %id)
CD610489   .a 6884 to 7161 278 to 1       278/278
(100 %)
2 diff
(99.3 %id)
CD610490   .a 6884 to 7158 1 to 274       274/277
(98 %)
4 diff
(98.6 %id)
DA112339 cerebellum .a 7046 to 7583 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
CD610501   .a 7242 to 7581 340 to 1       340/340
(100 %)
2 diff
(99.5 %id)
CD610499   .a 7434 to 7581 148 to 1       148/148
(100 %)
2 diff
(98.7 %id)
CD610500   .a 7434 to 7581 1 to 148       148/149
(99 %)
3 diff
(98.0 %id)
DA623579 Kidney .a 7780 to 8313 2 to 536   capped   535/535
(100 %)
2 diff
(99.7 %id)
DB233230 trachea .a 7861 to 8425 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
BP274476 Kidney .a 7904 to 8484 1 to 581       581/581
(100 %)
4 diff
(99.4 %id)
CD610504   .a 8208 to 8429 1 to 223       223/239
(93 %)
4 diff
(98.4 %id)
CD610503   .a 8209 to 8431 225 to 3       223/226
(98 %)
0 diff
(100 %id)
DA625155 Kidney .a 8259 to 8806 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DA624428 Kidney .a 8275 to 8830 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
BG994990 head_neck .a 8365 to 8853 1 to 489       489/489
(100 %)
19 diff
(96.2 %id)
DA383873 thalamus .a 8399 to 8964 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DB087315 testis .a 8402 to 8963 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA633446 Kidney .a 8458 to 9033 2 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
BG433277 Kidney .a 8471 to 9158 1 to 694       694/896
(77 %)
20 diff
(97.8 %id)
BG536099 lung .a 8527 to 9188 1 to 662       662/662
(100 %)
11 diff
(98.4 %id)
DA633245 Kidney .a 8640 to 9227 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA631512 Kidney .a 8707 to 9089 2 to 384   capped   383/383
(100 %)
1 diff
(99.8 %id)
BP218868 caudate nucleus .a 8716 to 9301 1 to 588       588/588
(100 %)
4 diff
(99.4 %id)
BU600818 mixed (pool of 40 RNAs) .a 8802 to 9603 1 to 808       807/832
(96 %)
21 diff
(97.5 %id)
DA626088 Kidney .a 8846 to 9390 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
BF105067 Kidney .a 8930 to 9507 1 to 575       575/1221
(47 %)
16 diff
(98.7 %id)
DA624126 Kidney .a 9005 to 9542 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DA635740 Kidney .a 9005 to 9565 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA689213   .a 9099 to 9621 2 to 524   capped   523/523
(100 %)
0 diff
(100 %id)
DA626680 Kidney .a 9148 to 9710 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA379504 thalamus .a 9178 to 9686 2 to 510   capped   509/509
(100 %)
0 diff
(100 %id)
BG433335 Kidney .a 9254 to 9916 1 to 667       667/667
(100 %)
13 diff
(98.1 %id)
DA622838 Kidney .a 9294 to 9877 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA632463 Kidney .a 9413 to 9984 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BG432615 Kidney .a 9506 to 10090 1 to 592       592/838
(70 %)
19 diff
(97.8 %id)
DA624832 Kidney .a 9552 to 10085 2 to 535   capped   534/541
(98 %)
2 diff
(99.7 %id)
AK075228 placenta .a 9569 to 11360 50 to 1841   tiling clone, available from FLJ,   1792/1841
(97 %)
8 diff
(99.6 %id)
DA833709 placenta .a 9569 to 10231 50 to 713   capped   664/724
(91 %)
8 diff
(98.9 %id)
BG432405 Kidney .a 9570 to 10233 1 to 666       666/864
(77 %)
19 diff
(97.9 %id)
DA635691 Kidney .a 9589 to 10160 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
AK074536 whole embryo, mainly head .a 9593 to 11360 1 to 1768   available from FLJ,   1768/1768
(100 %)
3 diff
(99.9 %id)
DA569557 whole embryo, mainly head .a 9594 to 10465 2 to 872   capped   871/871
(100 %)
7 diff
(99.2 %id)
BP276856 Kidney .a 9606 to 10187 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DB194842 trachea .a 9707 to 10227 2 to 522   capped   521/521
(100 %)
1 diff
(99.9 %id)
DA624712 Kidney .a 9847 to 10394 2 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
BG430242 Kidney .a 9895 to 10779 1 to 883       883/896
(98 %)
37 diff
(95.9 %id)
CD610482   .a 9968 to 10747 1 to 783       783/787
(99 %)
4 diff
(99.5 %id)
BG427080 Kidney .a 10006 to 10693 1 to 687       687/688
(99 %)
7 diff
(99.0 %id)
DA623915 Kidney .a 10014 to 10567 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA635881 Kidney .a 10059 to 10644 2 to 587   capped   586/586
(100 %)
2 diff
(99.7 %id)
CD244063 testis .a 10091 to 10916 32 to 859       828/883
(93 %)
12 diff
(98.7 %id)
CD610483   .a 10280 to 10791 516 to 11       506/516
(98 %)
1 diff
(99.9 %id)
BG431842 Kidney .a 10284 to 11142 1 to 853       853/1008
(84 %)
39 diff
(96.2 %id)
DB508513 testis .a 10580 to 11220 29 to 667     Submitted on the opposite strand 641/667
(96 %)
7 diff
(99.0 %id)
CA428216 Bone, Subchondral Bone .a 10717 to 11360 662 to 19   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 644/644
(100 %)
1 diff
(99.9 %id)
AA341460 Kidney .a 10726 to 11088 1 to 364       364/364
(100 %)
3 diff
(99.2 %id)
DB523696 testis .a 10771 to 11220 1 to 450     Submitted on the opposite strand 450/450
(100 %)
1 diff
(99.8 %id)
BI762808 pooled colon, kidney, stomach .a 10802 to 11602 1 to 799   tiling clone,   799/800
(99 %)
14 diff
(98.3 %id)
DB356204 whole embryo, mainly head .a 10817 to 11360 543 to 1       543/569
(95 %)
6 diff
(99.0 %id)
AI858332 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 10817 to 11369 553 to 1   tiling clone,   553/556
(99 %)
0 diff
(100 %id)
BI762679 pooled colon, kidney, stomach .a 10817 to 11634 16 to 843       828/843
(98 %)
31 diff
(96.4 %id)
TI_57150643   .a 10817 to 11602 44 to 827       784/828
(94 %)
14 diff
(98.4 %id)
TI_57150727   .a 10817 to 11634 46 to 873       828/873
(94 %)
31 diff
(96.5 %id)
DB380596 placenta .a 10878 to 11360 476 to 1       476/538
(88 %)
19 diff
(96.5 %id)
W63559 heart .a 11367 to 11933 568 to 5       564/666
(84 %)
0 diff
(100 %id)
BQ130592 insulinoma, Pancreas .a 11386 to 11931 561 to 16   tiling clone, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 546/546
(100 %)
0 diff
(100 %id)
AA495771 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 11408 to 11743 1 to 336       336/336
(100 %)
3 diff
(99.2 %id)
AI671749 Kidney .a 11408 to 11928 523 to 3       521/523
(99 %)
0 diff
(100 %id)
BF434554 Kidney .a 11433 to 11927 495 to 1       495/495
(100 %)
0 diff
(100 %id)
BM716637 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 11437 to 11927 1 to 491   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 491/491
(100 %)
0 diff
(100 %id)
TI_151776294   .a 11438 to 11927 104 to 593   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 490/580
(84 %)
6 diff
(99.0 %id)
AI245458 Kidney .a 11500 to 11927 426 to 1       426/426
(100 %)
2 diff
(99.6 %id)
AI017258 Kidney .a 11503 to 11927 425 to 1       425/425
(100 %)
1 diff
(99.8 %id)
AA923487 Kidney .a 11511 to 11927 418 to 1       418/418
(100 %)
5 diff
(98.9 %id)
W80877 heart .a 11537 to 11901 1 to 367       367/367
(100 %)
7 diff
(98.1 %id)
AF086456   .a 11538 to 11931 1 to 394   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 394/394
(100 %)
0 diff
(100 %id)
W81603 heart .a 11546 to 11927 384 to 1       384/388
(98 %)
5 diff
(98.8 %id)
AA495827 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 11564 to 11927 364 to 1       364/364
(100 %)
3 diff
(99.2 %id)
AI985277 Kidney .a 11568 to 11933 366 to 1       366/366
(100 %)
0 diff
(100 %id)
AW237502 Kidney .a 11581 to 11923 346 to 4       343/346
(99 %)
0 diff
(100 %id)
AW235082 Kidney .a 11581 to 11933 354 to 2       353/354
(99 %)
0 diff
(100 %id)
BF196533 Kidney .a 11582 to 11935 356 to 3   tiling clone,   354/356
(99 %)
0 diff
(100 %id)
AA999964 Kidney .a 11604 to 11927 324 to 1       324/324
(100 %)
0 diff
(100 %id)
AA975161 Kidney .a 11642 to 11927 286 to 1       286/286
(100 %)
0 diff
(100 %id)
AI222568 Kidney .a 11650 to 11931 282 to 1       282/282
(100 %)
0 diff
(100 %id)
BF197378 Kidney .a 11691 to 11931 241 to 1       241/241
(100 %)
0 diff
(100 %id)
AI244455 Kidney .a 11720 to 11927 208 to 1       208/208
(100 %)
0 diff
(100 %id)
BE463474 Kidney .a 11720 to 11927 208 to 1       208/208
(100 %)
0 diff
(100 %id)
AW242473 Kidney .a 11738 to 11933 202 to 7       196/202
(97 %)
0 diff
(100 %id)
AB209880 aorta endothelial cell .b 1 to 7423 1 to 7422 P265S S641G C868Y Y1327T L1328* tiling clone,   7422/7422
(100 %)
8 diff
(99.9 %id)
BG723566 testis .c 1 to 723 1 to 724   tiling clone,   724/793
(91 %)
19 diff
(97.7 %id)
DB089607 testis .c 5 to 571 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
BF979423 testis .c 6 to 601 6 to 599       594/1057
(56 %)
10 diff
(99.1 %id)
DB022882 testis .c 7 to 543 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DB067468 testis .c 7 to 541 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DB071186 testis .c 7 to 558 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
DB073422 testis .c 7 to 535 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
DB082210 testis .c 7 to 582 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB086981 testis .c 7 to 579 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB097362 testis .c 7 to 593 2 to 588   tiling clone, capped   587/587
(100 %)
0 diff
(100 %id)
DB451410 testis .c 9 to 514 1 to 505       505/505
(100 %)
2 diff
(99.7 %id)
DB636394 testis .c 9 to 723 1 to 713   tiling clone,   713/717
(99 %)
10 diff
(98.7 %id)
DB092287 testis .c 12 to 559 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
BF980372 testis .c 2893 to 3628 755 to 10   tiling clone,   744/974
(76 %)
27 diff
(97.3 %id)
AK309623   .d 1 to 1658 2 to 1659 exact tiling clone,   1659/1659
(100 %)
1 diff
(100.0 %id)
DA665988   .d 1 to 551 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
AK308290 testis .e 1 to 1654 1 to 1654 S73W R342* tiling clone,   1654/1654
(100 %)
3 diff
(99.9 %id)
DB063134 testis .e 2 to 560 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
AK310404 testis .f 1 to 2004 1 to 2004 S73W tiling clone,   2004/2004
(100 %)
1 diff
(100.0 %id)
DB071197 testis .f 2 to 546 2 to 547   capped   546/546
(100 %)
2 diff
(99.7 %id)
DB079225 testis .f 2 to 570 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DB452565.
matches multiple genes
testis .f 4 to 466 1 to 463     Submitted on the opposite strand, also hits gene florobo, larsabo, sasamo 463/463
(100 %)
1 diff
(99.8 %id)
CB047231 Kidney .g 1 to 569 10 to 578   tiling clone,   569/578
(98 %)
12 diff
(98.0 %id)
CB047230 Kidney .g 745 to 985 265 to 26   tiling clone, AAA   240/240
(100 %)
2 diff
(99.2 %id)
DA629183 Kidney .h 1 to 552 2 to 554   tiling clone, capped   553/553
(100 %)
1 diff
(99.9 %id)
DB339238.
matches multiple genes
testis .h 374 to 741 370 to 1   tiling clone, also hits gene blarswo 370/370
(100 %)
2 diff
(99.5 %id)
BI765121 pooled colon, kidney, stomach .i 1 to 714 1 to 705 L5S T6L T8P C9A Q10N ... tiling clone,   705/707
(99 %)
22 diff
(96.9 %id)
TI_57153015   .i 5 to 714 106 to 806       701/808
(86 %)
17 diff
(97.9 %id)
AI793020 Kidney .j 1 to 474 1 to 474   tiling clone,   474/474
(100 %)
0 diff
(100 %id)
BX090941 Kidney .j 4 to 555 1 to 554       554/554
(100 %)
2 diff
(99.7 %id)
AW241667 Kidney .j 193 to 748 557 to 3       555/557
(99 %)
6 diff
(99.0 %id)
CB047397 Kidney .j 220 to 750 10 to 540   fully sequenced,   531/540
(98 %)
6 diff
(98.9 %id)
AI373743 Kidney .j 268 to 756 494 to 7       488/494
(98 %)
0 diff
(100 %id)
AI744019 Kidney .j 310 to 754 445 to 1   tiling clone,   445/445
(100 %)
0 diff
(100 %id)
CB047396 Kidney .j 327 to 754 462 to 32   fully sequenced, AAA   431/431
(100 %)
3 diff
(99.4 %id)
AA910328 Kidney .j 349 to 745 395 to 1       395/395
(100 %)
5 diff
(98.8 %id)
AI766216 Kidney .j 658 to 1149 492 to 1   tiling clone,   492/492
(100 %)
1 diff
(99.8 %id)
AI793188 Kidney .j 678 to 1149 479 to 8       472/479
(98 %)
0 diff
(100 %id)
AI253182 Kidney .j 734 to 1156 433 to 11   tiling clone, AAA   423/423
(100 %)
1 diff
(99.8 %id)
AI005054 Kidney .k 1 to 599 601 to 1 P81S tiling clone,   601/601
(100 %)
5 diff
(99.2 %id)
AI922265 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .l-u 1 to 695 696 to 1 N16X N18T M21I S22E T24H ... tiling clone,   696/696
(100 %)
4 diff
(99.5 %id)
BX492199   .l-u 95 to 477 1 to 383   tiling clone,   383/383
(100 %)
8 diff
(98.0 %id)
DB321026 Kidney Gene CUBN, variant not shown         This clone was ignored    
DA636266 Kidney Gene CUBN, variant not shown       capped This clone was ignored    
DB122358 thymus Gene CUBN, variant not shown       capped This clone was ignored    
H56505 pineal gland Gene CUBN, variant not shown         This clone was ignored    
H56691 pineal gland Gene CUBN, variant not shown         This clone was ignored    
AI651425 Kidney Gene CUBN, variant not shown         This clone was ignored    
DB099010 testis Gene CUBN, variant not shown       capped      
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI