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Gene CTSCTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
460 supporting clones for gene CTSC back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CN368896 embryonic stem cells, DMSO-treated H9 cellline .a 1 to 270 9 to 278       278/278
(100 %)
0 diff
(100 %id)
NM_001814.4   .a 1 to 1898 9 to 1906 I153T RefSeq, AAA   1906/1906
(100 %)
1 diff
(100.0 %id)
DA380028 thalamus .a 1 to 523 6 to 528   capped   527/527
(100 %)
0 diff
(100 %id)
CR598242 placenta .a 1 to 1881 2 to 1882 exact tiling clone,   1882/1882
(100 %)
0 diff
(100 %id)
AL540914 placenta .a 1 to 931 2 to 931   fully sequenced,   931/931
(100 %)
7 diff
(99.3 %id)
DA010578 adrenal gland .a 1 to 567 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA463453   .a 1 to 555 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA607430   .a 1 to 533 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
CD242989 brain, Pituitary .a 14 to 742 1 to 731       731/870
(84 %)
8 diff
(99.1 %id)
CR624445 neuroblastoma .a 20 to 1879 1 to 1860 exact     1860/1860
(100 %)
0 diff
(100 %id)
AL517809 brain, neuroblastoma, neuroblastoma cells .a 20 to 977 1 to 956   fully sequenced,   956/956
(100 %)
5 diff
(99.5 %id)
TI_43963570   .a 20 to 832 36 to 859       822/871
(94 %)
45 diff
(94.9 %id)
BC107770 lung .a 25 to 1898 1 to 1875 K106* tiling clone, AAA   1875/1875
(100 %)
7 diff
(99.7 %id)
DA468730   .a 27 to 584 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA922050 small intestine .a 27 to 597 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
BG570012 lung .a 28 to 735 1 to 712       710/863
(82 %)
13 diff
(98.5 %id)
BG529124 adenocarcinoma, Prostate .a 29 to 92 1 to 64       64/64
(100 %)
1 diff
(98.5 %id)
BE245048 leukopheresis .a 29 to 344 1 to 316       316/316
(100 %)
25 diff
(92.1 %id)
AK223038 thyroid .a 30 to 1898 1 to 1869 K63I I153T AAA   1869/1869
(100 %)
2 diff
(99.9 %id)
BJ996604 hepatoblastoma .a 30 to 533 1 to 504       504/504
(100 %)
0 diff
(100 %id)
BM838492 Ascites, stomach .a 30 to 292 1 to 263       263/263
(100 %)
0 diff
(100 %id)
DA340881 substantia nigra .a 31 to 575 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA462485 cord Blood .a 31 to 575 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA469624   .a 31 to 584 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA469786   .a 31 to 589 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA604037   .a 31 to 534 2 to 505   capped   504/504
(100 %)
0 diff
(100 %id)
DA621226 Kidney .a 31 to 586 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA628844 Kidney .a 31 to 511 2 to 482   capped   481/481
(100 %)
0 diff
(100 %id)
DA632181 Kidney .a 31 to 544 2 to 515   capped   514/514
(100 %)
0 diff
(100 %id)
DA702876   .a 31 to 515 2 to 486   capped   485/485
(100 %)
0 diff
(100 %id)
BM848147 myeloma .a 31 to 507 11 to 487       477/477
(100 %)
0 diff
(100 %id)
BM848204 myeloma .a 31 to 513 11 to 493       483/483
(100 %)
0 diff
(100 %id)
DA916892 small intestine .a 31 to 590 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA931925 Spleen .a 31 to 580 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA981195 synovial membrane tissue from rheumatioidarthritis .a 31 to 515 2 to 486   capped   485/485
(100 %)
0 diff
(100 %id)
DB190678 lung, tumor tissue .a 31 to 610 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DB206754 trachea .a 31 to 614 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DB251013 uterus .a 31 to 572 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DB254005 uterus .a 31 to 515 2 to 486   capped   485/485
(100 %)
0 diff
(100 %id)
BM823179 stomach .a 33 to 325 1 to 293       293/293
(100 %)
0 diff
(100 %id)
DA467508 cord Blood .a 34 to 606 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA567928   .a 34 to 576 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
CR595572 Placenta Cot 25-normalized .a 38 to 1870 1 to 1833 exact     1833/1833
(100 %)
0 diff
(100 %id)
CR597937 placenta .a 38 to 1871 1 to 1834 exact     1834/1834
(100 %)
0 diff
(100 %id)
CR612734 Placenta Cot 25-normalized .a 38 to 1874 1 to 1837 exact     1837/1837
(100 %)
0 diff
(100 %id)
CR613100 Placenta Cot 25-normalized .a 38 to 1868 1 to 1831 exact     1831/1831
(100 %)
0 diff
(100 %id)
AL542222 placenta .a 38 to 932 1 to 893   fully sequenced,   893/893
(100 %)
5 diff
(99.5 %id)
BX378079 Placenta Cot 25-normalized .a 38 to 930 1 to 892   fully sequenced,   892/892
(100 %)
5 diff
(99.5 %id)
BX378510 Placenta Cot 25-normalized .a 38 to 932 1 to 895   fully sequenced,   895/895
(100 %)
4 diff
(99.6 %id)
BX379033 Placenta Cot 25-normalized .a 38 to 1013 1 to 973   fully sequenced,   973/973
(100 %)
5 diff
(99.5 %id)
BX338304 Placenta Cot 25-normalized .a 38 to 1013 1 to 980   fully sequenced,   980/980
(100 %)
18 diff
(98.2 %id)
CR595605 Placenta Cot 25-normalized .a 39 to 1858 1 to 1820 exact     1820/1820
(100 %)
0 diff
(100 %id)
CR618171 Placenta Cot 25-normalized .a 39 to 1880 1 to 1842 exact     1842/1842
(100 %)
0 diff
(100 %id)
BX438246 neuroblastoma .a 39 to 891 1 to 853       853/853
(100 %)
0 diff
(100 %id)
BX358146 Placenta Cot 25-normalized .a 39 to 932 1 to 894   fully sequenced,   894/894
(100 %)
1 diff
(99.9 %id)
BX399933 Placenta Cot 25-normalized .a 39 to 983 1 to 944   fully sequenced,   944/944
(100 %)
3 diff
(99.7 %id)
TI_57188816   .a 39 to 745 49 to 753       705/708
(99 %)
5 diff
(99.3 %id)
CR601206 Placenta Cot 25-normalized .a 40 to 1870 1 to 1831 exact     1831/1831
(100 %)
0 diff
(100 %id)
CR616227 Placenta Cot 25-normalized .a 40 to 1848 1 to 1809 exact     1809/1809
(100 %)
0 diff
(100 %id)
BX417634 placenta .a 40 to 1075 1 to 1023   fully sequenced,   1023/1023
(100 %)
13 diff
(98.8 %id)
BX334698 Placenta Cot 25-normalized .a 40 to 940 1 to 900   fully sequenced,   900/900
(100 %)
6 diff
(99.4 %id)
BX357941 Placenta Cot 25-normalized .a 40 to 953 1 to 910   fully sequenced,   910/910
(100 %)
5 diff
(99.5 %id)
BX338737 Placenta Cot 25-normalized .a 40 to 983 1 to 939   fully sequenced,   939/939
(100 %)
8 diff
(99.2 %id)
BM846382 myeloma .a 40 to 512 1 to 473       473/473
(100 %)
0 diff
(100 %id)
CR594896 Placenta Cot 25-normalized .a 42 to 1873 1 to 1832 exact     1832/1832
(100 %)
0 diff
(100 %id)
CR610221 Placenta Cot 25-normalized .a 42 to 1890 1 to 1849 exact     1849/1849
(100 %)
0 diff
(100 %id)
CR612501 Placenta Cot 25-normalized .a 42 to 1871 1 to 1830 exact     1830/1830
(100 %)
0 diff
(100 %id)
CR616799 Placenta Cot 25-normalized .a 42 to 1865 1 to 1824 exact     1824/1824
(100 %)
0 diff
(100 %id)
BX335972 Placenta Cot 25-normalized .a 42 to 966 1 to 922   fully sequenced,   922/922
(100 %)
5 diff
(99.5 %id)
BX397572 Placenta Cot 25-normalized .a 42 to 1072 1 to 1028   fully sequenced,   1028/1028
(100 %)
1 diff
(100.0 %id)
BX339569 Placenta Cot 25-normalized .a 42 to 932 1 to 889   fully sequenced,   889/889
(100 %)
2 diff
(99.8 %id)
CR606590 Placenta Cot 25-normalized .a 46 to 1864 1 to 1819 exact     1819/1819
(100 %)
0 diff
(100 %id)
BX377161 Placenta Cot 25-normalized .a 46 to 984 1 to 939       939/1041
(90 %)
1 diff
(100.0 %id)
CR615573 Placenta Cot 25-normalized .a 47 to 1836 1 to 1790 exact     1790/1790
(100 %)
0 diff
(100 %id)
AL551578 placenta, Placenta Cot 25-normalized .a 47 to 943 1 to 893   fully sequenced,   893/893
(100 %)
11 diff
(98.8 %id)
CR609574 Placenta Cot 25-normalized .a 48 to 1870 1 to 1823 exact     1823/1823
(100 %)
0 diff
(100 %id)
BX396132 Placenta Cot 25-normalized .a 48 to 933 1 to 886   fully sequenced,   886/886
(100 %)
2 diff
(99.8 %id)
BX358736 Placenta Cot 25-normalized .a 48 to 928 1 to 881       881/881
(100 %)
1 diff
(99.9 %id)
TI_57172985   .a 50 to 807 62 to 820       759/820
(92 %)
13 diff
(98.5 %id)
BX403603 placenta .a 52 to 1055 1 to 994   fully sequenced,   994/994
(100 %)
8 diff
(99.2 %id)
CR614340 placenta .a 52 to 1895 1 to 1844 exact     1844/1844
(100 %)
0 diff
(100 %id)
CR610023 T cells (Jurkat cell line) Cot10-normalized .a 53 to 1868 1 to 1816 exact     1816/1816
(100 %)
0 diff
(100 %id)
CR612418 Placenta Cot 25-normalized .a 53 to 1858 1 to 1806 exact     1806/1806
(100 %)
0 diff
(100 %id)
CR616827 Placenta Cot 25-normalized .a 53 to 1885 1 to 1833 exact     1833/1833
(100 %)
0 diff
(100 %id)
BX335492 Placenta Cot 25-normalized .a 53 to 932 1 to 879   fully sequenced,   879/879
(100 %)
5 diff
(99.5 %id)
AL559527 T cells from T cell leukemia .a 54 to 917 1 to 863       863/863
(100 %)
7 diff
(99.2 %id)
TI_57218293   .a 57 to 780 29 to 755       727/755
(96 %)
10 diff
(98.7 %id)
DB201696 trachea .a 60 to 647 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
AK292117 synovial membrane tissue from rheumatoidarthritis .a 61 to 1617 1 to 1557 I153T     1557/1557
(100 %)
1 diff
(100.0 %id)
X87212 ileum .a 61 to 1898 1 to 1838 I153T     1838/1838
(100 %)
1 diff
(100.0 %id)
BX356554 Placenta Cot 25-normalized .a 64 to 932 10 to 878   fully sequenced,   869/878
(98 %)
7 diff
(99.3 %id)
TI_57163202   .a 64 to 807 27 to 768       742/768
(96 %)
12 diff
(98.5 %id)
CX753331 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 66 to 797 1 to 731     Submitted on the opposite strand 731/731
(100 %)
2 diff
(99.8 %id)
AF234263   .a 68 to 1535 1 to 1468 exact     1468/1468
(100 %)
0 diff
(100 %id)
AF234264   .a 68 to 1535 1 to 1468 I153T D236Y     1468/1468
(100 %)
2 diff
(99.9 %id)
AF254757   .a 68 to 1535 1 to 1468 I153T C291Y     1468/1468
(100 %)
2 diff
(99.9 %id)
AF525032   .a 68 to 1535 1 to 1468 I153T Y294H     1468/1468
(100 %)
2 diff
(99.9 %id)
AF525033   .a 68 to 1535 1 to 1468 C24*     1468/1468
(100 %)
2 diff
(99.9 %id)
BU174610 ductal carcinoma, cell line, Pancreas .a 70 to 929 1 to 866       866/868
(99 %)
18 diff
(98.0 %id)
CR601485 neuroblastoma .a 84 to 1870 1 to 1787 exact     1787/1787
(100 %)
0 diff
(100 %id)
CR625368 fetal liver .a 84 to 1864 1 to 1781 exact     1781/1781
(100 %)
0 diff
(100 %id)
FN168257 breast carcinoma .a 84 to 172 87 to 1     Submitted on the opposite strand 87/88
(98 %)
2 diff
(97.8 %id)
BF171736 blood .a 93 to 246 1 to 165       165/165
(100 %)
19 diff
(88.5 %id)
BX445346 fetal liver, Liver .a 94 to 983 1 to 889       889/889
(100 %)
2 diff
(99.8 %id)
BX448761 fetal liver, Liver .a 94 to 1118 9 to 1025       1017/1030
(98 %)
30 diff
(97.1 %id)
BM766067 stomach .a 138 to 514 1 to 377       377/377
(100 %)
0 diff
(100 %id)
BE814601 breast_normal .a 141 to 375 235 to 1       235/248
(94 %)
0 diff
(100 %id)
FN078890 breast carcinoma .a 155 to 206 1 to 52       52/52
(100 %)
0 diff
(100 %id)
BF997124 placenta_normal .a 170 to 449 285 to 7       279/302
(92 %)
1 diff
(99.7 %id)
BX329214   .a 272 to 1129 858 to 1       858/861
(99 %)
17 diff
(98.1 %id)
FN082295 breast carcinoma .a 280 to 344 1 to 66       66/66
(100 %)
1 diff
(98.5 %id)
BF350728 head_neck .a 290 to 735 540 to 95       446/540
(82 %)
3 diff
(99.5 %id)
CD612872   .a 405 to 1080 688 to 14       675/794
(85 %)
7 diff
(99.2 %id)
BE825509 lung_normal .a 416 to 647 243 to 14       230/243
(94 %)
4 diff
(98.4 %id)
BE706874 head_neck .a 513 to 844 336 to 8       329/336
(97 %)
1 diff
(99.8 %id)
BE825394 lung_normal .a 517 to 651 139 to 4       136/139
(97 %)
5 diff
(96.5 %id)
CX788040 human embryonic stem cells .a 580 to 1315 1 to 736       736/736
(100 %)
2 diff
(99.8 %id)
BE787494 large cell carcinoma, lung .a 619 to 1263 1 to 650       650/945
(68 %)
6 diff
(99.4 %id)
CD612875   .a 633 to 1355 738 to 13       726/740
(98 %)
11 diff
(98.6 %id)
EH352002   .a 697 to 774 1 to 78       78/78
(100 %)
0 diff
(100 %id)
CB158889 Liver .a 724 to 1243 1 to 520       520/520
(100 %)
0 diff
(100 %id)
CD612874   .a 737 to 1355 633 to 13       621/633
(98 %)
13 diff
(98.0 %id)
BQ360338 ovary .a 752 to 1194 447 to 5       443/447
(99 %)
0 diff
(100 %id)
FN066870 breast carcinoma .a 773 to 850 1 to 78       78/83
(93 %)
3 diff
(96.4 %id)
CR617349 Placenta Cot 25-normalized .a 774 to 1861 1 to 1088       1088/1088
(100 %)
0 diff
(100 %id)
BX358376 Placenta Cot 25-normalized .a 774 to 1523 1 to 744   fully sequenced,   744/744
(100 %)
0 diff
(100 %id)
BX096068 placenta .a 807 to 1507 1 to 701       701/701
(100 %)
0 diff
(100 %id)
BQ221810 large cell carcinoma, lung .a 813 to 1546 1 to 742       742/846
(87 %)
15 diff
(98.3 %id)
FN161573 breast carcinoma .a 840 to 931 92 to 1     Submitted on the opposite strand 92/93
(98 %)
6 diff
(93.6 %id)
BE831584 marrow .a 853 to 1341 490 to 4       487/503
(96 %)
6 diff
(98.9 %id)
BX448760 fetal liver, Liver .a 866 to 1830 964 to 1       964/973
(99 %)
22 diff
(97.8 %id)
BX378078 Placenta Cot 25-normalized .a 900 to 1874 976 to 1   fully sequenced,   976/976
(100 %)
9 diff
(99.1 %id)
AL568647 placenta .a 901 to 1873 979 to 9   fully sequenced,   971/979
(99 %)
1 diff
(99.9 %id)
AL569316 placenta .a 902 to 1871 972 to 1   fully sequenced,   972/972
(100 %)
2 diff
(99.8 %id)
BX356553 Placenta Cot 25-normalized .a 902 to 1858 959 to 1   fully sequenced,   959/959
(100 %)
18 diff
(98.2 %id)
BX335491 Placenta Cot 25-normalized .a 902 to 1885 990 to 1   fully sequenced,   990/990
(100 %)
13 diff
(98.7 %id)
BX378509 Placenta Cot 25-normalized .a 902 to 1868 966 to 1   fully sequenced,   966/966
(100 %)
3 diff
(99.7 %id)
BX358145 Placenta Cot 25-normalized .a 902 to 1858 958 to 1   fully sequenced,   958/958
(100 %)
9 diff
(99.1 %id)
BX339568 Placenta Cot 25-normalized .a 902 to 1871 971 to 1   fully sequenced,   971/971
(100 %)
5 diff
(99.5 %id)
BX396131 Placenta Cot 25-normalized .a 903 to 1870 965 to 1   fully sequenced,   965/965
(100 %)
2 diff
(99.8 %id)
BX445345 fetal liver, Liver .a 907 to 1864 958 to 1       958/958
(100 %)
0 diff
(100 %id)
AL575102 placenta, Placenta Cot 25-normalized .a 913 to 1836 917 to 1   fully sequenced,   917/917
(100 %)
22 diff
(97.7 %id)
BX334697 Placenta Cot 25-normalized .a 919 to 1848 930 to 1   fully sequenced,   930/930
(100 %)
8 diff
(99.2 %id)
AW964280   .a 922 to 1657 1 to 735       735/739
(99 %)
12 diff
(98.4 %id)
BX357940 Placenta Cot 25-normalized .a 923 to 1870 946 to 1   fully sequenced,   946/946
(100 %)
2 diff
(99.8 %id)
BX358735 Placenta Cot 25-normalized .a 929 to 1864 936 to 1       936/936
(100 %)
5 diff
(99.5 %id)
BX335971 Placenta Cot 25-normalized .a 936 to 1866 935 to 8   fully sequenced,   928/935
(99 %)
1 diff
(99.9 %id)
BQ333702 marrow .a 950 to 1533 584 to 1       584/584
(100 %)
3 diff
(99.5 %id)
AL517808 brain, neuroblastoma, neuroblastoma cells .a 952 to 1879 924 to 1   fully sequenced,   924/924
(100 %)
9 diff
(99.1 %id)
BX338303 Placenta Cot 25-normalized .a 952 to 1849 915 to 23   fully sequenced,   893/915
(97 %)
0 diff
(100 %id)
BX338736 Placenta Cot 25-normalized .a 952 to 1852 905 to 6   fully sequenced,   900/905
(99 %)
2 diff
(99.8 %id)
BX399932 Placenta Cot 25-normalized .a 952 to 1880 931 to 1   fully sequenced,   931/931
(100 %)
19 diff
(98.0 %id)
TI_57188039   .a 960 to 1852 54 to 950       897/943
(95 %)
26 diff
(97.3 %id)
BP423275 small intestine .a 962 to 1479 1 to 518     Submitted on the opposite strand 518/518
(100 %)
0 diff
(100 %id)
BQ333686 marrow .a 971 to 1517 551 to 4       548/551
(99 %)
0 diff
(100 %id)
BX379032 Placenta Cot 25-normalized .a 971 to 1852 887 to 7   fully sequenced,   881/887
(99 %)
0 diff
(100 %id)
BX377160 Placenta Cot 25-normalized .a 977 to 1864 890 to 1       890/1093
(81 %)
6 diff
(99.5 %id)
BX416395 neuroblastoma .a 981 to 1881 901 to 1       901/901
(100 %)
20 diff
(97.8 %id)
BX433548 placenta .a 1025 to 1894 866 to 1   fully sequenced,   866/866
(100 %)
14 diff
(98.4 %id)
BX373424 Placenta Cot 25-normalized .a 1042 to 1890 850 to 1   fully sequenced,   850/850
(100 %)
13 diff
(98.5 %id)
BX412365 placenta .a 1045 to 1895 849 to 1   fully sequenced,   849/849
(100 %)
10 diff
(98.9 %id)
TI_43963571   .a 1211 to 1802 644 to 17       628/1143
(54 %)
0 diff
(100 %id)
BX358375 Placenta Cot 25-normalized .a 1493 to 1861 370 to 1   fully sequenced,   370/370
(100 %)
3 diff
(99.2 %id)
BC008059 Skin, melanotic melanoma. .b 1 to 1798 10 to 1807 exact tiling clone, available from MGC, AAA   1798/1798
(100 %)
0 diff
(100 %id)
BE274561 melanotic melanoma, skin .b 20 to 625 1 to 606   available from MGC,   606/606
(100 %)
3 diff
(99.6 %id)
TI_149303068   .b 874 to 1792 980 to 79   AAA   902/956
(94 %)
29 diff
(97.0 %id)
TI_227713513   .b 879 to 1792 957 to 60   AAA   898/1008
(89 %)
21 diff
(98.0 %id)
TI_149302465   .b 880 to 1798 1002 to 92   AAA   911/990
(92 %)
23 diff
(97.7 %id)
AL581127 T cells from T cell leukemia .b 881 to 1768 885 to 1       885/885
(100 %)
5 diff
(99.5 %id)
BG118987 adenocarcinoma, cell line, Liver .b 883 to 1612 1 to 729       729/933
(78 %)
9 diff
(99.1 %id)
TI_149302968   .b 883 to 1792 981 to 88   AAA   894/945
(94 %)
38 diff
(96.0 %id)
TI_227712360   .b 883 to 1798 981 to 82   AAA   900/1003
(89 %)
28 diff
(97.3 %id)
TI_154043309   .b 887 to 1792 973 to 93   AAA   881/996
(88 %)
28 diff
(97.2 %id)
FN164240 breast carcinoma .b 888 to 989 102 to 4     Submitted on the opposite strand 99/102
(97 %)
0 diff
(100 %id)
TI_149313512   .b 940 to 1798 947 to 96   AAA   852/955
(89 %)
22 diff
(97.7 %id)
TI_227714774   .b 945 to 1792 932 to 93   AAA   840/959
(87 %)
14 diff
(98.6 %id)
TI_227714775   .b 948 to 1798 934 to 90   AAA   845/980
(86 %)
21 diff
(97.9 %id)
EH324680   .b 982 to 1043 1 to 62       62/62
(100 %)
0 diff
(100 %id)
TI_149304969   .b 983 to 1798 904 to 107   AAA   798/905
(88 %)
19 diff
(98.0 %id)
FN124153 breast carcinoma .b 985 to 1067 85 to 1     Submitted on the opposite strand 85/86
(98 %)
2 diff
(97.7 %id)
TI_149299990   .b 992 to 1798 873 to 82   AAA   792/914
(86 %)
30 diff
(96.8 %id)
TI_149299463   .b 1000 to 1792 875 to 91   AAA   785/935
(83 %)
12 diff
(98.8 %id)
TI_57165286   .b 1001 to 1703 26 to 725       700/731
(95 %)
6 diff
(99.2 %id)
TI_57167502   .b 1001 to 1706 77 to 781       705/1012
(69 %)
14 diff
(98.7 %id)
TI_149285924   .b 1008 to 1795 864 to 86   AAA   779/797
(97 %)
16 diff
(98.0 %id)
TI_227712371   .b 1009 to 1792 865 to 94   AAA   772/971
(79 %)
16 diff
(98.4 %id)
TI_227714878   .b 1009 to 1798 873 to 97   AAA   777/977
(79 %)
17 diff
(98.3 %id)
TI_227715069   .b 1009 to 1798 880 to 99   AAA   782/937
(83 %)
11 diff
(98.9 %id)
BF815665 colon_ins .b 1024 to 1626 613 to 13     Submitted on the opposite strand 601/613
(98 %)
0 diff
(100 %id)
CB529845 Aveolar Macrophage, lung .b 1025 to 1792 776 to 13   AAA   764/764
(100 %)
4 diff
(99.5 %id)
BQ348107 head_neck .b 1037 to 1646 615 to 7       609/615
(99 %)
0 diff
(100 %id)
CR601562 Placenta Cot 25-normalized .b 1038 to 1794 1 to 757       757/757
(100 %)
0 diff
(100 %id)
CN368905 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 1041 to 1613 1 to 573       573/573
(100 %)
0 diff
(100 %id)
TI_154041281   .b 1042 to 1798 848 to 91   AAA   758/914
(82 %)
67 diff
(92.7 %id)
TI_149301713   .b 1044 to 1798 839 to 93   AAA   747/924
(80 %)
8 diff
(99.2 %id)
TI_227715714   .b 1044 to 1798 832 to 87   AAA   746/933
(79 %)
16 diff
(98.3 %id)
TI_154115750   .b 1051 to 1792 838 to 94   AAA   745/986
(75 %)
16 diff
(98.4 %id)
CD370364 Alveolar Macrophage, lung .b 1054 to 1798 759 to 19   AAA   741/741
(100 %)
7 diff
(99.1 %id)
CB160320 Liver .b 1055 to 1596 1 to 542       542/542
(100 %)
0 diff
(100 %id)
CD364490 Alveolar Macrophage, lung .b 1061 to 1792 742 to 13   AAA   730/730
(100 %)
2 diff
(99.8 %id)
CD365570 Alveolar Macrophage, lung .b 1066 to 1798 749 to 19   AAA   731/731
(100 %)
2 diff
(99.8 %id)
CN480455 lung, Lung Focal Fibrosis .b 1070 to 1792 735 to 19   AAA   717/717
(100 %)
6 diff
(99.2 %id)
BF342328 brain, glioblastoma with EGFR amplification .b 1073 to 1550 1 to 478       478/478
(100 %)
0 diff
(100 %id)
CA306046 Alveolar Macrophage, lung .b 1079 to 1792 725 to 13   AAA   713/713
(100 %)
1 diff
(99.9 %id)
AW363586 colon .b 1083 to 1717 627 to 2       626/647
(96 %)
0 diff
(100 %id)
BU617018 Cell Line, Chondrosarcoma .b 1086 to 1798 726 to 19   AAA   708/712
(99 %)
6 diff
(99.2 %id)
CA450006 Human Lung Epithelial cells, lung .b 1087 to 1792 718 to 13   AAA   706/706
(100 %)
0 diff
(100 %id)
FN047568 breast carcinoma .b 1095 to 1159 65 to 1     Submitted on the opposite strand 65/71
(91 %)
1 diff
(98.6 %id)
TI_154020248   .b 1096 to 1798 786 to 86   AAA   701/705
(99 %)
3 diff
(99.6 %id)
TI_149283414   .b 1098 to 1792 773 to 81   AAA   693/693
(100 %)
6 diff
(99.2 %id)
CD367077 Alveolar Macrophage, lung .b 1118 to 1798 699 to 19   AAA   681/681
(100 %)
1 diff
(99.9 %id)
CN368907 embryonic stem cells, DMSO-treated H9 cellline .b 1130 to 1578 1 to 449       449/449
(100 %)
0 diff
(100 %id)
TI_149281722   .b 1130 to 1798 753 to 86   AAA   668/669
(99 %)
1 diff
(99.9 %id)
CD742722 Alveolar Macrophage, lung .b 1133 to 1798 683 to 19   AAA   665/665
(100 %)
1 diff
(99.9 %id)
BM976158 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 1134 to 1798 682 to 19   AAA   664/664
(100 %)
1 diff
(99.9 %id)
BU609028 Human Lung Epithelial cells, lung .b 1134 to 1798 682 to 19   AAA   664/664
(100 %)
1 diff
(99.9 %id)
CA438360 lung, Metastatic Chondrosarcoma .b 1135 to 1798 681 to 19   AAA   663/663
(100 %)
2 diff
(99.7 %id)
BG163494 hypernephroma, cell line, Kidney .b 1137 to 1758 1 to 622       622/622
(100 %)
0 diff
(100 %id)
TI_149278072   .b 1137 to 1792 749 to 94   AAA   656/676
(97 %)
4 diff
(99.5 %id)
BF439994 brain, glioblastoma (pooled) .b 1146 to 1798 653 to 1       653/653
(100 %)
4 diff
(99.4 %id)
FN083745 breast carcinoma .b 1149 to 1209 63 to 1     Submitted on the opposite strand 63/66
(95 %)
1 diff
(98.5 %id)
BU678197 lung .b 1149 to 1792 656 to 13   AAA   644/655
(98 %)
0 diff
(100 %id)
BU679675 lung .b 1151 to 1798 666 to 19   AAA   648/648
(100 %)
0 diff
(100 %id)
CB850761 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 1156 to 1792 649 to 13   AAA   637/637
(100 %)
0 diff
(100 %id)
CA310180 Alveolar Macrophage, lung .b 1156 to 1798 661 to 19   AAA   643/643
(100 %)
1 diff
(99.9 %id)
CD366827 Alveolar Macrophage, lung .b 1157 to 1798 660 to 19   AAA   642/642
(100 %)
0 diff
(100 %id)
BM997817 lung, Lung Focal Fibrosis .b 1172 to 1798 645 to 19   AAA   627/627
(100 %)
0 diff
(100 %id)
BM980035 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 1172 to 1798 645 to 19   AAA   627/627
(100 %)
0 diff
(100 %id)
CA306057 Alveolar Macrophage, lung .b 1172 to 1792 633 to 13   AAA   621/621
(100 %)
0 diff
(100 %id)
CA306700 Alveolar Macrophage, lung .b 1172 to 1792 633 to 13   AAA   621/621
(100 %)
0 diff
(100 %id)
CD742721 Alveolar Macrophage, lung .b 1172 to 1792 639 to 19   AAA   621/621
(100 %)
0 diff
(100 %id)
CD367087 Alveolar Macrophage, lung .b 1172 to 1792 639 to 19   AAA   621/621
(100 %)
0 diff
(100 %id)
CA439819 lung, Lung Focal Fibrosis .b 1173 to 1798 644 to 19   AAA   626/626
(100 %)
0 diff
(100 %id)
TI_151797633   .b 1173 to 1715 170 to 714       545/714
(76 %)
6 diff
(99.2 %id)
BQ362923 stomach .b 1177 to 1668 500 to 4       497/502
(99 %)
0 diff
(100 %id)
CD743240 Alveolar Macrophage, lung .b 1186 to 1798 631 to 19   AAA   613/613
(100 %)
0 diff
(100 %id)
AW519037 adenocarcinoma, Pancreas .b 1194 to 1380 187 to 1       187/187
(100 %)
0 diff
(100 %id)
BM984063 lung, Primary Lung Epithelial Cells .b 1194 to 1792 611 to 13   AAA   599/599
(100 %)
0 diff
(100 %id)
CA440529 lung, Lung Focal Fibrosis .b 1195 to 1792 616 to 19   AAA   598/598
(100 %)
2 diff
(99.7 %id)
TI_154092974   .b 1204 to 1794 699 to 111       589/1245
(47 %)
0 diff
(100 %id)
BI093381 cervix .b 1223 to 1798 1 to 576   AAA   576/576
(100 %)
0 diff
(100 %id)
BM263371 Pancreas, Purified pancreatic islet .b 1230 to 1798 569 to 1       569/569
(100 %)
0 diff
(100 %id)
BE831618 marrow .b 1235 to 1424 195 to 6       190/195
(97 %)
0 diff
(100 %id)
AW803051 uterus .b 1244 to 1452 216 to 8       209/241
(86 %)
0 diff
(100 %id)
BE831603 marrow .b 1257 to 1458 206 to 3       204/206
(99 %)
0 diff
(100 %id)
BF594195 brain, glioblastoma (pooled) .b 1257 to 1798 542 to 1       542/542
(100 %)
0 diff
(100 %id)
BE855543 brain, glioblastoma (pooled) .b 1263 to 1798 536 to 1       536/536
(100 %)
0 diff
(100 %id)
AA471039 colon .b 1266 to 1351 88 to 3       86/88
(97 %)
0 diff
(100 %id)
FN137155 breast carcinoma .b 1280 to 1362 84 to 1     Submitted on the opposite strand 84/87
(96 %)
4 diff
(95.5 %id)
BM996564 lung, Metastatic Chondrosarcoma .b 1291 to 1792 514 to 13   AAA   502/502
(100 %)
0 diff
(100 %id)
FN169736 breast carcinoma .b 1297 to 1388 89 to 1     Submitted on the opposite strand 89/89
(100 %)
4 diff
(95.6 %id)
AI273385 adenocarcinoma, colon .b 1311 to 1792 482 to 1       482/482
(100 %)
0 diff
(100 %id)
BM698090 eye, fetal eyes .b 1325 to 1525 1 to 201   fully sequenced,   201/201
(100 %)
0 diff
(100 %id)
BM667679 eye, fetal eyes .b 1326 to 1798 491 to 19   AAA   473/473
(100 %)
0 diff
(100 %id)
AI359314 brain, glioblastoma (pooled) .b 1338 to 1786 449 to 1       449/449
(100 %)
0 diff
(100 %id)
AI362797 anaplastic oligodendroglioma, brain .b 1344 to 1792 449 to 1       449/449
(100 %)
0 diff
(100 %id)
FN122517 breast carcinoma .b 1358 to 1459 102 to 1     Submitted on the opposite strand 102/102
(100 %)
0 diff
(100 %id)
AI346633 adenocarcinoma, colon .b 1369 to 1775 407 to 1       407/407
(100 %)
0 diff
(100 %id)
AI339769 adenocarcinoma, colon .b 1377 to 1792 416 to 1       416/416
(100 %)
0 diff
(100 %id)
AI159818 placenta .b 1378 to 1792 415 to 1       415/415
(100 %)
0 diff
(100 %id)
AI431993 adenocarcinoma, Pancreas .b 1398 to 1793 396 to 1       396/396
(100 %)
0 diff
(100 %id)
AI474061 Kidney .b 1406 to 1792 387 to 1       387/387
(100 %)
0 diff
(100 %id)
AI263002 Kidney .b 1408 to 1792 385 to 1       385/385
(100 %)
0 diff
(100 %id)
BM849671 stomach .b 1414 to 1742 1 to 329       329/329
(100 %)
0 diff
(100 %id)
AI718444 aorta .b 1416 to 1798 383 to 1       383/383
(100 %)
0 diff
(100 %id)
BE244914 leukopheresis .b 1427 to 1798 370 to 1       370/370
(100 %)
16 diff
(95.7 %id)
BX475905   .b 1428 to 1798 1 to 371   AAA   371/371
(100 %)
0 diff
(100 %id)
AA405503   .b 1433 to 1794 365 to 4       362/365
(99 %)
0 diff
(100 %id)
TI_149272640   .b 1438 to 1795 446 to 89   AAA   358/1000
(35 %)
0 diff
(100 %id)
AI866248 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 1441 to 1787 347 to 1       347/347
(100 %)
0 diff
(100 %id)
AW392842 stomach .b 1446 to 1722 284 to 7       278/290
(95 %)
0 diff
(100 %id)
BQ952234 sciatic nerve .b 1447 to 1798 1 to 352   AAA   352/352
(100 %)
0 diff
(100 %id)
BF743930 breast .b 1460 to 1677 224 to 5     Submitted on the opposite strand 220/238
(92 %)
0 diff
(100 %id)
BF745527 breast .b 1460 to 1596 141 to 6     Submitted on the opposite strand 136/155
(87 %)
0 diff
(100 %id)
BF745862 breast .b 1460 to 1633 174 to 2     Submitted on the opposite strand 173/188
(92 %)
0 diff
(100 %id)
BQ304699 breast .b 1460 to 1622 164 to 2       163/178
(91 %)
0 diff
(100 %id)
CK824569 Pancreas, Purified pancreatic islet .b 1460 to 1798 360 to 21   AAA Submitted on the opposite strand 340/340
(100 %)
1 diff
(99.8 %id)
BF094332 uterus_tumor .b 1468 to 1767 303 to 4       300/311
(96 %)
0 diff
(100 %id)
BG994232 head_neck .b 1468 to 1767 311 to 14       298/319
(93 %)
0 diff
(100 %id)
AW768467 lymph node, lymphoma, follicular mixed small and largecell .b 1474 to 1798 339 to 15   AAA   325/325
(100 %)
0 diff
(100 %id)
BM667247 eye, fetal eyes .b 1495 to 1798 322 to 19   fully sequenced, AAA   304/304
(100 %)
0 diff
(100 %id)
AW510462 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 1528 to 1793 266 to 1       266/266
(100 %)
0 diff
(100 %id)
FN149369 breast carcinoma .b 1545 to 1644 1 to 99       99/100
(99 %)
3 diff
(97.0 %id)
AA886405 Kidney .b 1559 to 1799 241 to 1       241/241
(100 %)
0 diff
(100 %id)
CN368900 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 1568 to 1792 275 to 51   AAA Submitted on the opposite strand 225/226
(99 %)
1 diff
(99.6 %id)
AA632074 breast .b 1574 to 1797 224 to 1       224/224
(100 %)
0 diff
(100 %id)
FN136750 breast carcinoma .b 1576 to 1672 103 to 9     Submitted on the opposite strand 95/114
(83 %)
0 diff
(100 %id)
FN079202 breast carcinoma .b 1660 to 1743 85 to 1     Submitted on the opposite strand 85/85
(100 %)
3 diff
(96.5 %id)
AA877390 2 pooled tumors (clear cell type), Kidney .b 1663 to 1794 136 to 5       132/136
(97 %)
0 diff
(100 %id)
AA917847 adenocarcinoma, colon .b 1664 to 1798 135 to 1       135/135
(100 %)
0 diff
(100 %id)
NM_001114173.1   .c 1 to 6090 9 to 6098 exact RefSeq,   6098/6099
(99 %)
5 diff
(100.0 %id)
BM830761 stomach .c 33 to 614 1 to 582   tiling clone,   582/582
(100 %)
0 diff
(100 %id)
BM823539 stomach .c 37 to 516 1 to 480       480/480
(100 %)
11 diff
(97.8 %id)
BC113850 PCR rescued clones .c 44 to 779 1 to 737       737/737
(100 %)
1 diff
(99.9 %id)
BG436619 large cell carcinoma, lung .c 50 to 734 1 to 743       743/745
(99 %)
23 diff
(97.0 %id)
AA029131 uterus .c 65 to 496 1 to 430       430/441
(97 %)
5 diff
(98.9 %id)
TI_149292255   .c 65 to 806 804 to 65   AAA   740/926
(79 %)
2 diff
(99.8 %id)
BM974453 lung .c 116 to 806 706 to 17   AAA   690/690
(100 %)
1 diff
(99.9 %id)
CA308572 Alveolar Macrophage, lung .c 158 to 806 663 to 17   AAA   647/647
(100 %)
3 diff
(99.6 %id)
BG183817   .c 409 to 808 1 to 400       400/402
(99 %)
3 diff
(99.3 %id)
CD517472 White Matter .c 456 to 809 27 to 379   AAA   353/379
(93 %)
6 diff
(98.5 %id)
AI217609 heart .c 493 to 806 314 to 1       314/314
(100 %)
0 diff
(100 %id)
AI372084 pooled germ cell tumors .c 495 to 808 316 to 3       314/316
(99 %)
0 diff
(100 %id)
BU736755 eye, RPE and Choroid .c 497 to 925 447 to 19   tiling clone, AAA   429/429
(100 %)
0 diff
(100 %id)
AI200991   .c 529 to 806 290 to 13   AAA   278/278
(100 %)
1 diff
(99.7 %id)
AI720347 colon .c 531 to 799 274 to 6       269/274
(98 %)
0 diff
(100 %id)
AI880912 aorta .c 534 to 802 270 to 2       269/299
(89 %)
0 diff
(100 %id)
AI263564 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 535 to 806 272 to 1       272/272
(100 %)
1 diff
(99.7 %id)
AA862783 pooled germ cell tumors .c 542 to 806 266 to 1       266/266
(100 %)
3 diff
(98.9 %id)
AA028965 uterus .c 553 to 806 260 to 1       260/260
(100 %)
7 diff
(97.4 %id)
FN061513 breast carcinoma .c 561 to 622 62 to 1     Submitted on the opposite strand 62/62
(100 %)
0 diff
(100 %id)
AA564376 colon .c 562 to 807 244 to 1       244/244
(100 %)
2 diff
(99.2 %id)
N74110 lung .c 577 to 806 230 to 1       230/232
(99 %)
3 diff
(98.8 %id)
AI367291 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 578 to 804 227 to 1       227/227
(100 %)
0 diff
(100 %id)
AI879913 colon .c 581 to 806 227 to 1       227/227
(100 %)
1 diff
(99.6 %id)
Z21520   .c 607 to 808 217 to 18       200/220
(90 %)
0 diff
(100 %id)
CB243600 Human Lung Epithelial cells, lung .c 608 to 806 215 to 17   AAA   199/199
(100 %)
0 diff
(100 %id)
FN058801 breast carcinoma .c 611 to 679 67 to 1     Submitted on the opposite strand 67/68
(98 %)
5 diff
(92.7 %id)
BE151984 head_neck .c 614 to 763 150 to 1     Submitted on the opposite strand 150/150
(100 %)
1 diff
(99.4 %id)
AI582057 colon .c 723 to 797 77 to 3       75/79
(94 %)
0 diff
(100 %id)
BQ948011 eye, normal pigmented retinal epithelium .c 1583 to 2472 1 to 899   tiling clone,   899/933
(96 %)
22 diff
(97.7 %id)
BX470770   .c 1769 to 2367 1 to 598   tiling clone,   598/598
(100 %)
1 diff
(99.9 %id)
BQ580389   .c 1864 to 2708 1 to 844   tiling clone,   844/844
(100 %)
6 diff
(99.3 %id)
AL700095 human skeletal muscle .c 2011 to 2669 1 to 659   tiling clone,   659/660
(99 %)
9 diff
(98.7 %id)
DA906724   .c 2978 to 3548 2 to 572   tiling clone, capped   571/571
(100 %)
2 diff
(99.7 %id)
BE867386 adenocarcinoma, colon .c 3653 to 4332 1 to 672   tiling clone,   672/901
(74 %)
28 diff
(96.9 %id)
BG259125 embryonal carcinoma, cell line, testis .c 5030 to 5769 1 to 743   tiling clone,   743/1002
(74 %)
24 diff
(97.7 %id)
AA129639 uterus .c 5199 to 5700 1 to 520   tiling clone,   520/525
(99 %)
23 diff
(95.7 %id)
BX104801 2 pooled tumors (clear cell type), Kidney .c 5431 to 6053 1 to 623   tiling clone,   623/623
(100 %)
2 diff
(99.7 %id)
AI793337 2 pooled tumors (clear cell type), Kidney .c 5508 to 5856 1 to 349       349/349
(100 %)
2 diff
(99.5 %id)
AV699565.
matches multiple genes
hepatocellular carcinoma .c 5514 to 6087 581 to 14   AAA This clone was ignored, also hits gene tormerbu 568/679
(83 %)
20 diff
(97.1 %id)
DB331201   .c 5540 to 6082 543 to 1       543/543
(100 %)
2 diff
(99.7 %id)
AI733312 2 pooled tumors (clear cell type), Kidney .c 5541 to 6083 544 to 2       543/544
(99 %)
0 diff
(100 %id)
AW166848 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 5574 to 6085 512 to 1   tiling clone,   512/512
(100 %)
3 diff
(99.5 %id)
AI821972 2 pooled tumors (clear cell type), Kidney .c 5613 to 6083 479 to 9       471/479
(98 %)
0 diff
(100 %id)
AA740376 2 pooled tumors (clear cell type), Kidney .c 5636 to 6083 459 to 9       451/459
(98 %)
0 diff
(100 %id)
AA996336 2 pooled tumors (clear cell type), Kidney .c 5680 to 6083 412 to 9   tiling clone,   404/412
(98 %)
0 diff
(100 %id)
AA970722 2 pooled tumors (clear cell type), Kidney .c 5705 to 6072 368 to 1       368/368
(100 %)
1 diff
(99.8 %id)
AW770169 lymph node, lymphoma, follicular mixed small and largecell .c 5746 to 6083 340 to 1       340/340
(100 %)
2 diff
(99.5 %id)
AA129640 uterus .c 5804 to 6087 315 to 32   AAA   284/284
(100 %)
2 diff
(99.3 %id)
BQ672380 epidermoid carcinoma, cell line, salivary gland .d 1 to 859 18 to 894 exact tiling clone,   877/985
(89 %)
42 diff
(95.8 %id)
BQ672241 epidermoid carcinoma, cell line, salivary gland .d 4 to 883 1 to 894 exact tiling clone,   894/1007
(88 %)
21 diff
(98.0 %id)
BG490208 large cell carcinoma, lung .d 20 to 618 1 to 600 F163L     600/600
(100 %)
3 diff
(99.5 %id)
NM_148170.3   .e 1 to 6134 9 to 6142 exact RefSeq,   6142/6143
(99 %)
5 diff
(100.0 %id)
DB488816 hypothalamus .e 1 to 667 8 to 673 E61X Q90K Y99X K100Q F111X tiling clone,   673/673
(100 %)
7 diff
(99.0 %id)
CB114425 Liver .e 1 to 560 4 to 563 I87V     563/563
(100 %)
5 diff
(99.2 %id)
BM989558 lung, Metastatic Chondrosarcoma .e 4 to 658 19 to 673 exact   Submitted on the opposite strand 655/655
(100 %)
1 diff
(99.9 %id)
BX537913 human fetal kidney .e 5 to 6128 1 to 6124 exact tiling clone, available from DKFZ, AAA   6124/6124
(100 %)
27 diff
(99.6 %id)
CR593092 Neuroblastoma Cot 25-normalized .e 16 to 958 1 to 943 exact     943/943
(100 %)
0 diff
(100 %id)
AL523626 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .e 16 to 442 1 to 427   fully sequenced,   427/427
(100 %)
5 diff
(98.9 %id)
BU534935 mixed (pool of 40 RNAs) .e 23 to 741 1 to 724 exact     724/754
(96 %)
9 diff
(98.9 %id)
BG767186 melanotic melanoma, high MDR (cell line), skin .e 26 to 777 1 to 758 exact     758/934
(81 %)
11 diff
(98.9 %id)
BG766772 melanotic melanoma, high MDR (cell line), skin .e 26 to 849 1 to 827 D25R T26H P27T A28C N29Q ...     827/1041
(79 %)
24 diff
(97.7 %id)
BU933506 mixed (pool of 40 RNAs) .e 27 to 670 1 to 657 T73S     657/856
(76 %)
13 diff
(98.5 %id)
BU940082 mixed (pool of 40 RNAs) .e 27 to 820 1 to 818 exact     818/819
(99 %)
22 diff
(97.4 %id)
BU954323 mixed (pool of 40 RNAs) .e 27 to 745 1 to 728 N132D     728/763
(95 %)
22 diff
(97.2 %id)
BM817610 stomach .e 27 to 656 1 to 630 exact     630/630
(100 %)
2 diff
(99.7 %id)
AK311923 cerebellum .e 30 to 507 1 to 478 exact     478/478
(100 %)
0 diff
(100 %id)
CB961794 placenta, pre-eclamptic placenta .e 30 to 676 28 to 683 R131K     656/755
(86 %)
17 diff
(97.8 %id)
DA123575 cerebellum .e 31 to 583 2 to 555 C24X D25R T26H P27T A28C ... capped   554/554
(100 %)
1 diff
(99.9 %id)
BG249361 hypernephroma, cell line, Kidney .e 40 to 732 1 to 704 F92L E93*     704/896
(78 %)
15 diff
(98.4 %id)
BC054028 Pancreas, epithelioid carcinoma .e 40 to 850 1 to 811 exact available from MGC, AAA   811/811
(100 %)
0 diff
(100 %id)
CV574372 cornea, eye .e 40 to 673 1 to 634 exact     634/634
(100 %)
1 diff
(99.9 %id)
BU192821 epithelioid carcinoma, Pancreas .e 41 to 852 1 to 814 exact available from MGC,   814/857
(94 %)
6 diff
(99.3 %id)
BU146413 epidermoid carcinoma, cell line, salivary gland .e 42 to 853 1 to 817 exact AAA   817/817
(100 %)
8 diff
(99.1 %id)
BU158126 epidermoid carcinoma, cell line, salivary gland .e 42 to 809 1 to 780 exact     780/949
(82 %)
23 diff
(97.6 %id)
BM555757 amelanotic melanoma, cell line, skin .e 44 to 850 27 to 838 exact AAA   812/838
(96 %)
18 diff
(97.9 %id)
BM808479 amelanotic melanoma, cell line, skin .e 44 to 850 26 to 832 exact AAA   807/832
(96 %)
7 diff
(99.2 %id)
BQ674711 epidermoid carcinoma, cell line, salivary gland .e 44 to 762 1 to 721 exact     721/976
(73 %)
13 diff
(98.7 %id)
BC100891 PCR rescued clones .e 44 to 823 1 to 780 exact     780/780
(100 %)
0 diff
(100 %id)
BC100892 PCR rescued clones .e 44 to 823 1 to 780 exact     780/780
(100 %)
0 diff
(100 %id)
BC100893 PCR rescued clones .e 44 to 823 1 to 781 exact     781/781
(100 %)
1 diff
(99.9 %id)
BC100894 PCR rescued clones .e 44 to 823 1 to 780 exact     780/780
(100 %)
0 diff
(100 %id)
BC113897 PCR rescued clones .e 44 to 823 1 to 780 exact     780/780
(100 %)
0 diff
(100 %id)
BC109386 PCR rescued clones .e 44 to 823 1 to 780 exact     780/780
(100 %)
0 diff
(100 %id)
BC110071 PCR rescued clones .e 44 to 823 1 to 780 exact     780/780
(100 %)
0 diff
(100 %id)
BM718036 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e 44 to 440 1 to 398   fully sequenced,   396/396
(100 %)
1 diff
(99.8 %id)
BG421541 Kidney, renal cell adenocarcinoma .e 45 to 830 1 to 787 exact     787/880
(89 %)
24 diff
(97.3 %id)
BU175169 large cell carcinoma, lung .e 46 to 812 1 to 774 exact     774/835
(92 %)
12 diff
(98.6 %id)
BQ670850 epidermoid carcinoma, cell line, salivary gland .e 47 to 765 1 to 723 exact     723/970
(74 %)
24 diff
(97.6 %id)
BG519822 brain, neuroblastoma .e 60 to 852 1 to 795 K106* available from MGC,   793/812
(97 %)
9 diff
(98.9 %id)
BE905879 epithelioid carcinoma, Pancreas .e 60 to 852 1 to 800 exact     800/859
(93 %)
32 diff
(96.3 %id)
TI_57166295   .e 60 to 777 30 to 746 L12S L13C L14C L15F L16S ...     717/746
(96 %)
10 diff
(98.7 %id)
AA130378 uterus .e 61 to 503 1 to 442       442/442
(100 %)
3 diff
(99.4 %id)
BC023559 Brain, neuroblastoma .e 61 to 850 1 to 791 K106* available from MGC, AAA   789/791
(99 %)
1 diff
(99.9 %id)
BI835121 pooled pancreas and spleen .e 61 to 777 1 to 716 L12S L13C L14C L15F L16S ...     716/716
(100 %)
5 diff
(99.4 %id)
AI246687 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 63 to 854 787 to 2 A3C L16S S17P C24S D25T ...     788/799
(98 %)
21 diff
(97.4 %id)
DN996648 breast cancer, Mammary gland (cancer tissue) .e 64 to 726 8 to 670 exact     663/670
(98 %)
6 diff
(99.2 %id)
BG029761 breast, mammary adenocarcinoma, cell line .e 65 to 833 1 to 772 exact     772/795
(97 %)
19 diff
(97.7 %id)
BI858105 breast, mammary adenocarcinoma, cell line .e 65 to 778 1 to 713 F102L A103P F105L K106R D107M ...     713/713
(100 %)
1 diff
(99.9 %id)
TI_57187244   .e 65 to 778 50 to 762 F102L A103P F105L K106R D107M ...     713/713
(100 %)
1 diff
(99.9 %id)
TI_159680965   .e 65 to 969 982 to 81 A3D A11P L15M L16M G20A ... AAA   902/1016
(88 %)
33 diff
(96.8 %id)
BQ671128 epidermoid carcinoma, cell line, salivary gland .e 66 to 849 818 to 36 A11G L16P S17P G18A D19T ... AAA Submitted on the opposite strand 783/880
(88 %)
5 diff
(99.5 %id)
BM831696 stomach .e 71 to 598 1 to 527 S6P L7C L8C L9S A10P ...     527/527
(100 %)
1 diff
(99.9 %id)
CN368910 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .e 76 to 613 1 to 537 exact     537/537
(100 %)
6 diff
(98.9 %id)
AW238836 lung, cell line .e 77 to 527 1 to 451 R131K fully sequenced,   451/451
(100 %)
1 diff
(99.8 %id)
BE312757 brain, neuroblastoma .e 79 to 852 1 to 761 L12S L13C L14C L15F L16S ... available from MGC,   759/870
(87 %)
30 diff
(96.6 %id)
BM694174 eye, RPE and Choroid .e 82 to 553 1 to 472 exact     472/472
(100 %)
0 diff
(100 %id)
BM704674 eye, RPE and Choroid .e 82 to 769 1 to 688 exact     688/688
(100 %)
0 diff
(100 %id)
TI_151801110   .e 82 to 846 110 to 879 D25K C30*     770/874
(88 %)
51 diff
(94.2 %id)
TI_151776344   .e 86 to 442 105 to 461   fully sequenced,   357/357
(100 %)
5 diff
(98.6 %id)
AI349340 lung .e 114 to 596 31 to 513     Submitted on the opposite strand 483/513
(94 %)
6 diff
(98.9 %id)
AW167729 cervix .e 124 to 850 728 to 1       728/731
(99 %)
9 diff
(98.8 %id)
BU180515 epidermoid carcinoma, cell line, salivary gland .e 135 to 850 760 to 36   AAA Submitted on the opposite strand 725/888
(81 %)
21 diff
(97.7 %id)
CD369892 Alveolar Macrophage, lung .e 140 to 850 725 to 17   AAA   709/709
(100 %)
2 diff
(99.8 %id)
AA632308 breast .e 146 to 849 704 to 1       704/757
(92 %)
4 diff
(99.5 %id)
BF435253 pooled .e 155 to 854 704 to 7       698/708
(98 %)
4 diff
(99.5 %id)
BE789543 large cell carcinoma, lung .e 169 to 817 1 to 665       663/695
(95 %)
47 diff
(93.3 %id)
AI609516 normal gingiva (cell line from immortalizedkeratinocytes) .e 181 to 850 668 to 1       668/677
(98 %)
8 diff
(98.9 %id)
AW001092 colon, colonic mucosa from 3 patients with Crohn'sdisease .e 187 to 850 671 to 11   AAA   661/661
(100 %)
9 diff
(98.7 %id)
BU739248 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e 193 to 848 671 to 19   AAA   653/653
(100 %)
3 diff
(99.6 %id)
CA308330 Alveolar Macrophage, lung .e 193 to 853 679 to 19   AAA   661/661
(100 %)
0 diff
(100 %id)
BQ671947 epidermoid carcinoma, cell line, salivary gland .e 195 to 845 1 to 656       656/960
(68 %)
18 diff
(98.2 %id)
BQ672984 epidermoid carcinoma, cell line, salivary gland .e 195 to 850 1 to 655   AAA   655/655
(100 %)
1 diff
(99.9 %id)
AI687735 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .e 201 to 850 644 to 1       646/644
(100 %)
17 diff
(97.4 %id)
TI_149288075   .e 202 to 850 722 to 77   AAA   646/939
(68 %)
9 diff
(99.1 %id)
TI_149292202   .e 210 to 853 729 to 86   AAA   644/938
(68 %)
0 diff
(100 %id)
AI831665 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .e 211 to 852 643 to 3       643/643
(100 %)
13 diff
(98.0 %id)
BF435168 pooled .e 219 to 854 638 to 7       634/641
(98 %)
7 diff
(99.0 %id)
BM974317 lung .e 219 to 853 650 to 16   AAA   635/635
(100 %)
0 diff
(100 %id)
CA308209 Alveolar Macrophage, lung .e 225 to 850 644 to 17   AAA   628/628
(100 %)
4 diff
(99.4 %id)
BQ181750 Knee, Osteoarthritic Cartilage .e 227 to 848 638 to 17   AAA   622/631
(98 %)
0 diff
(100 %id)
AW304309 lung, two pooled squamous cell carcinomas .e 236 to 850 641 to 27   AAA   615/616
(99 %)
4 diff
(99.4 %id)
AA298576 lung .e 247 to 584 1 to 338       338/338
(100 %)
0 diff
(100 %id)
BF868654 lung_tumor .e 260 to 685 11 to 437       430/437
(98 %)
8 diff
(98.2 %id)
BU681171 lung .e 261 to 850 606 to 17   AAA   590/591
(99 %)
4 diff
(99.4 %id)
AI625524 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .e 265 to 850 601 to 17   AAA   585/666
(87 %)
9 diff
(98.7 %id)
AI870130 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .e 265 to 851 588 to 1       588/594
(98 %)
13 diff
(97.9 %id)
AI191064 lung .e 268 to 850 588 to 1       588/601
(97 %)
13 diff
(97.9 %id)
BU954921 mixed (pool of 40 RNAs) .e 281 to 850 1 to 572       572/748
(76 %)
23 diff
(97.0 %id)
BM711529 eye, optic nerve .e 294 to 832 1 to 539       539/548
(98 %)
1 diff
(99.9 %id)
TI_151704470   .e 294 to 848 647 to 93   AAA   555/930
(59 %)
0 diff
(100 %id)
AI572643 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .e 307 to 852 547 to 2       546/547
(99 %)
3 diff
(99.5 %id)
BE785519 large cell carcinoma, lung .e 313 to 844 1 to 533       533/533
(100 %)
3 diff
(99.5 %id)
AA242818 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 317 to 854 540 to 1       540/540
(100 %)
15 diff
(97.3 %id)
DB558181 hypothalamus .e 324 to 850 149 to 675     Submitted on the opposite strand 527/675
(78 %)
11 diff
(98.4 %id)
AI024836   .e 331 to 852 522 to 2       521/522
(99 %)
5 diff
(99.1 %id)
BP393403 pancreatic islet .e 352 to 850 1 to 500     Submitted on the opposite strand 500/500
(100 %)
2 diff
(99.6 %id)
AL523625 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .e 381 to 958 579 to 1   fully sequenced,   579/579
(100 %)
22 diff
(96.3 %id)
BM680489 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e 381 to 850 487 to 17   fully sequenced, AAA   471/471
(100 %)
1 diff
(99.8 %id)
TI_151751027   .e 381 to 853 530 to 58   fully sequenced, AAA   473/473
(100 %)
10 diff
(97.9 %id)
AI191358 lung .e 398 to 850 453 to 1       453/453
(100 %)
0 diff
(100 %id)
AI084459 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 403 to 848 446 to 1       446/447
(99 %)
0 diff
(100 %id)
AI302664 2 pooled tumors (clear cell type), Kidney .e 403 to 854 455 to 4       452/456
(99 %)
0 diff
(100 %id)
BF002759 Prostate .e 404 to 850 447 to 1       447/447
(100 %)
0 diff
(100 %id)
BG193245   .e 406 to 852 1 to 444       442/445
(99 %)
10 diff
(97.8 %id)
BG206646   .e 406 to 849 1 to 442       440/444
(99 %)
8 diff
(98.2 %id)
BG189642   .e 409 to 848 1 to 441   AAA   441/441
(100 %)
4 diff
(99.1 %id)
AI289182 2 pooled tumors (clear cell type), Kidney .e 416 to 854 443 to 6       438/443
(98 %)
1 diff
(99.8 %id)
AI375434   .e 426 to 853 442 to 15   AAA   428/428
(100 %)
1 diff
(99.8 %id)
AI167974 senescent fibroblast .e 429 to 852 431 to 8       424/431
(98 %)
0 diff
(100 %id)
AI201622 heart .e 431 to 854 430 to 7       424/430
(98 %)
1 diff
(99.8 %id)
BG189641   .e 435 to 852 66 to 482       417/486
(85 %)
18 diff
(96.3 %id)
BQ448461 Knee, Osteoarthritic Cartilage .e 440 to 853 426 to 16   AAA   411/411
(100 %)
2 diff
(99.6 %id)
AW237859 well-differentiated invasive carcinoma,floor of mouth .e 447 to 776 335 to 7       329/342
(96 %)
0 diff
(100 %id)
AA010915 heart .e 448 to 836 1 to 388   fully sequenced,   388/388
(100 %)
2 diff
(99.5 %id)
AI888580 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .e 463 to 850 386 to 1       386/386
(100 %)
2 diff
(99.5 %id)
CB956892 Pooled-Glandular .e 466 to 850 1 to 386       386/793
(48 %)
4 diff
(99.5 %id)
AA629134 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 470 to 770 301 to 1       301/301
(100 %)
3 diff
(99.1 %id)
BG422927 Kidney, renal cell adenocarcinoma .e 475 to 850 1 to 376   AAA   376/376
(100 %)
3 diff
(99.3 %id)
AA011305 heart .e 482 to 850 369 to 1   fully sequenced,   369/369
(100 %)
2 diff
(99.5 %id)
AJ708569 heart .e 491 to 854 1 to 370       370/378
(97 %)
6 diff
(98.5 %id)
BF198023 skin, normal, 4 pooled samples .e 494 to 850 357 to 1       357/357
(100 %)
0 diff
(100 %id)
AW151711 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .e 496 to 851 356 to 1       356/364
(97 %)
0 diff
(100 %id)
AI088322 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 499 to 854 357 to 3       355/357
(99 %)
0 diff
(100 %id)
AW168685 bowel (skin primary), metastatic melanoma to bowel .e 501 to 852 351 to 1       351/352
(99 %)
1 diff
(99.8 %id)
AW974027   .e 507 to 850 344 to 1     Submitted on the opposite strand 344/344
(100 %)
9 diff
(97.4 %id)
AW078807 lung, cell line .e 513 to 854 381 to 39   fully sequenced, AAA   343/343
(100 %)
33 diff
(90.4 %id)
BF335260 colon .e 517 to 843 377 to 51       327/377
(86 %)
0 diff
(100 %id)
TI_154009165   .e 520 to 850 421 to 91   AAA   331/907
(36 %)
0 diff
(100 %id)
CA435185 lung, Metastatic Chondrosarcoma .e 520 to 850 347 to 17   AAA   331/339
(97 %)
0 diff
(100 %id)
BM838080 Ascites, stomach .f 1 to 543 1 to 543 exact tiling clone,   543/543
(100 %)
0 diff
(100 %id)
CB109604 Liver .f 33 to 456 1 to 424       424/424
(100 %)
1 diff
(99.8 %id)
H03844 placenta .f 38 to 471 1 to 452       416/455
(91 %)
20 diff
(95.7 %id)
BG468661 adenocarcinoma cell line, colon .f 52 to 469 1 to 419       419/1052
(39 %)
7 diff
(99.4 %id)
AA298634 lung .f 125 to 469 1 to 345       345/348
(99 %)
4 diff
(98.9 %id)
CB127209 cervix, Uterine .g 1 to 622 1 to 621 T38P W39G V40S F41S Q42R ... tiling clone,   621/621
(100 %)
1 diff
(99.9 %id)
T56477 fetal spleen, Spleen .h-u 1 to 328 1 to 342   tiling clone,   342/408
(83 %)
14 diff
(96.6 %id)
CD516216 White Matter .h-u 306 to 1194 20 to 910 N104K R110A R111E G112E T113L ... tiling clone,   891/910
(97 %)
21 diff
(97.7 %id)
FN103025 breast carcinoma .h-u 317 to 429 112 to 1     Submitted on the opposite strand 112/114
(98 %)
3 diff
(97.4 %id)
T56326 fetal spleen, Spleen .h-u 1341 to 1563 235 to 12   tiling clone,   224/235
(95 %)
0 diff
(100 %id)
BM798865 stomach .i 1 to 452 1 to 452 F102L R125D S126H tiling clone,   452/452
(100 %)
3 diff
(99.4 %id)
DA677279   .j 1 to 582 2 to 585 C24X D25R T26H P27T A28C ... tiling clone, capped   584/584
(100 %)
4 diff
(99.4 %id)
BQ878138 melanotic melanoma, cell line, skin .k 1 to 722 1 to 722   tiling clone, AAA   722/722
(100 %)
0 diff
(100 %id)
AA580006 breast .k 249 to 722 474 to 1       474/474
(100 %)
7 diff
(98.6 %id)
AI016723 Kidney .k 352 to 722 382 to 12   AAA   371/371
(100 %)
0 diff
(100 %id)
DA859375 placenta .l-u 1 to 536 2 to 537   tiling clone, capped   536/536
(100 %)
3 diff
(99.5 %id)
BU598132 mixed (pool of 40 RNAs) .l-u 437 to 1172 1 to 747 S10F S11I P12A A13S S14I ... tiling clone,   747/878
(85 %)
19 diff
(97.9 %id)
BF088006 head_neck .l-u 719 to 1194 480 to 6   tiling clone,   475/480
(98 %)
0 diff
(100 %id)
AL599809   .m-u 1 to 505 14 to 520 Y2X C5L T6H T7H I8X ... tiling clone,   507/526
(96 %)
8 diff
(98.5 %id)
BM147652 leukopheresis .m-u 343 to 858 1 to 516   tiling clone,   516/519
(99 %)
7 diff
(98.7 %id)
FN099717 breast carcinoma .m-u 801 to 888 88 to 1   tiling clone, Submitted on the opposite strand 88/89
(98 %)
1 diff
(98.9 %id)
AI188098   .n-u 1 to 484 500 to 16 L15F L16T K17* tiling clone, AAA   485/488
(99 %)
2 diff
(99.6 %id)
AW884787 ovary .o-u 1 to 328 333 to 4 exact tiling clone,   330/348
(94 %)
0 diff
(100 %id)
AK296190 thalamus Gene CTSC, variant not shown         Suspected internal deletion, this clone was ignored    
DC340683 thalamus Gene CTSC, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i, .j, .k, .l-u, .m-u, .n-u, .o-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI