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Gene CTCFLandHMGB1L1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
85 supporting clones for gene CTCFLandHMGB1L1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DQ778109 testis .a 1 to 3664 1 to 3664 T273A tiling clone, AAA   3664/3664
(100 %)
1 diff
(100.0 %id)
BG722482 testis .a 174 to 902 1 to 733   available from MGC,   734/733
(100 %)
16 diff
(97.9 %id)
BC060763 testis .a 178 to 3664 1 to 3488   available from MGC, AAA   3488/3488
(100 %)
5 diff
(99.9 %id)
AF336042 testis .a 209 to 3664 9 to 3463   AAA   3455/3463
(99 %)
10 diff
(99.8 %id)
NM_080618.2   .a 209 to 3664 1 to 3456   RefSeq, AAA   3456/3456
(100 %)
0 diff
(100 %id)
BC130486 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 224 to 2649 1 to 2426       2426/2426
(100 %)
2 diff
(100.0 %id)
TI_1607545283   .a 224 to 977 50 to 797     Submitted on the opposite strand 748/797
(93 %)
23 diff
(97.2 %id)
TI_1607547635   .a 719 to 1907 10 to 1190       1163/1265
(91 %)
43 diff
(96.7 %id)
TI_1607547127   .a 1780 to 2649 946 to 76       871/1338
(65 %)
48 diff
(96.5 %id)
TI_1607545303   .a 1789 to 2649 930 to 73       858/930
(92 %)
58 diff
(93.8 %id)
TI_1607547385   .a 1811 to 2649 972 to 139       834/1114
(74 %)
46 diff
(95.9 %id)
TI_1607547643   .a 1877 to 2473 1 to 596       596/597
(99 %)
37 diff
(93.9 %id)
TI_1607545483   .a 2061 to 2649 11 to 597       587/885
(66 %)
22 diff
(97.6 %id)
BG527694 lung, mucoepidermoid carcinoma .a 2264 to 2971 1 to 707       707/711
(99 %)
4 diff
(99.5 %id)
BG687495 lung, mucoepidermoid carcinoma .a 2374 to 3100 1 to 726       726/872
(83 %)
7 diff
(99.2 %id)
BF185295 bone marrow, from chronic myelogenous leukemia .a 2379 to 2922 1 to 553       553/841
(65 %)
18 diff
(97.9 %id)
AL049118 testis .a 2416 to 3006 1 to 587       587/591
(99 %)
6 diff
(99.0 %id)
BU170289 eye, retinoblastoma .a 2735 to 3621 1 to 887       887/887
(100 %)
6 diff
(99.4 %id)
AL844409 stomach .a 2753 to 3202 450 to 1       450/833
(54 %)
6 diff
(99.3 %id)
BF209606 bone marrow, from chronic myelogenous leukemia .a 2790 to 3502 1 to 720       720/775
(92 %)
33 diff
(95.8 %id)
BQ429595 testis .a 2843 to 3600 1 to 765       765/765
(100 %)
30 diff
(96.1 %id)
BX094837   .a 2918 to 3411 1 to 494       494/494
(100 %)
0 diff
(100 %id)
AI024580   .a 3227 to 3660 439 to 6       434/439
(98 %)
0 diff
(100 %id)
AI024578   .a 3245 to 3660 421 to 6       416/421
(98 %)
0 diff
(100 %id)
DQ778111 testis .b 1 to 2472 9 to 2479 H8T K9S P10Q K11R T12R ... tiling clone, AAA   2471/2479
(99 %)
11 diff
(99.6 %id)
TI_1607545321   .b 16 to 321 51 to 356   tiling clone, Submitted on the opposite strand 306/356
(85 %)
10 diff
(97.2 %id)
AL732017 breast .b 22 to 601 1 to 584       584/584
(100 %)
34 diff
(94.2 %id)
AL844319 breast .b 93 to 766 671 to 1       671/675
(99 %)
7 diff
(99.0 %id)
AL844477 breast .b 101 to 773 1 to 673       673/673
(100 %)
3 diff
(99.6 %id)
BU629814 cell lines, Chondrosarcoma .b 159 to 828 673 to 5   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 669/675
(99 %)
6 diff
(99.2 %id)
DB073663 testis .b 334 to 885 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
BY996245   .b 394 to 1039 12 to 657       646/657
(98 %)
6 diff
(99.1 %id)
AL732020 breast .b 622 to 1282 1 to 661       661/661
(100 %)
5 diff
(99.3 %id)
AL844279 breast .b 627 to 1207 581 to 1       581/582
(99 %)
4 diff
(99.4 %id)
AL844303 breast .b 627 to 1201 575 to 1       575/576
(99 %)
2 diff
(99.7 %id)
AL844305 breast .b 627 to 1200 574 to 1       574/575
(99 %)
2 diff
(99.7 %id)
AL844304 breast .b 684 to 1262 1 to 578       578/579
(99 %)
6 diff
(99.0 %id)
AL844306 breast .b 684 to 1262 1 to 580       580/582
(99 %)
4 diff
(99.4 %id)
AL732039 breast .b 693 to 1224 535 to 2       534/667
(80 %)
27 diff
(96.0 %id)
AL844280 breast .b 703 to 1262 1 to 561       561/562
(99 %)
7 diff
(98.8 %id)
AL732037 breast .b 836 to 1194 359 to 1       359/375
(95 %)
9 diff
(97.6 %id)
AL732038 breast .b 850 to 1195 348 to 1       348/348
(100 %)
5 diff
(98.6 %id)
AL732021 breast .b 1018 to 1693 682 to 3       680/682
(99 %)
17 diff
(97.6 %id)
TI_1607545487   .b 1140 to 2100 7 to 971       965/971
(99 %)
25 diff
(97.5 %id)
AL844410 stomach .b 1624 to 2007 1 to 389       389/389
(100 %)
8 diff
(98.0 %id)
AK128070 testis .c 1 to 3558 2 to 3559 T241A tiling clone, available from FLJ,   3559/3559
(100 %)
4 diff
(99.9 %id)
AK313990 testis .c 69 to 2184 1 to 2116   tiling clone,   2116/2116
(100 %)
3 diff
(99.9 %id)
DQ778108 testis .d 1 to 3564 1 to 3564 T240A tiling clone, AAA   3564/3564
(100 %)
1 diff
(100.0 %id)
AY071919 testis .e 1 to 3480 1 to 3480 D652E tiling clone, AAA   3480/3480
(100 %)
1 diff
(100.0 %id)
AL844411 stomach .e 1662 to 2039 1 to 378   tiling clone,   378/643
(58 %)
7 diff
(99.0 %id)
DQ778122 testis .f 1 to 2915 1 to 2915 T240A tiling clone, AAA   2915/2915
(100 %)
1 diff
(100.0 %id)
DQ778115 testis .g 1 to 3359 1 to 3359 exact tiling clone, AAA   3359/3359
(100 %)
0 diff
(100 %id)
DQ778110 testis .h 1 to 4036 1 to 4036 T177A tiling clone, AAA   4036/4036
(100 %)
1 diff
(100.0 %id)
DQ778123 testis .i 1 to 2966 1 to 2966 exact tiling clone, AAA   2966/2966
(100 %)
0 diff
(100 %id)
DQ778112 testis .j 1 to 3860 1 to 3860 T177A tiling clone, AAA   3860/3860
(100 %)
1 diff
(100.0 %id)
DQ294738 testis .j 76 to 3860 1 to 3785 T177A AAA   3785/3785
(100 %)
1 diff
(100.0 %id)
DB064631 testis .j 445 to 1007 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB068314 testis .j 513 to 1014 2 to 503   capped   502/502
(100 %)
0 diff
(100 %id)
DB080676 testis .j 514 to 1091 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DB339581 testis .j 3310 to 3852 543 to 1       543/543
(100 %)
0 diff
(100 %id)
DQ778125 testis .k 1 to 2225 9 to 2233 exact tiling clone, AAA   2225/2233
(99 %)
9 diff
(99.6 %id)
DQ778121 testis .l 1 to 2955 1 to 2955 exact tiling clone, AAA   2955/2955
(100 %)
0 diff
(100 %id)
DQ778126 testis .m 1 to 2253 9 to 2260 T8Q S9A Q10K R11D R12G ... tiling clone, AAA   2252/2260
(99 %)
9 diff
(99.7 %id)
DQ778113 testis .n 1 to 1503 1 to 1503 T240A tiling clone, AAA   1503/1503
(100 %)
2 diff
(99.9 %id)
AW243377 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .n 1021 to 1512 493 to 2       492/522
(94 %)
11 diff
(97.9 %id)
DQ778118 testis .o 1 to 3996 1 to 3996 T177A tiling clone, AAA   3996/3996
(100 %)
1 diff
(100.0 %id)
DQ778124 testis .p 1 to 2014 9 to 2022 exact tiling clone, AAA   2014/2022
(99 %)
9 diff
(99.6 %id)
DQ778116 testis .q 1 to 2964 1 to 2964 exact tiling clone, AAA   2964/2964
(100 %)
0 diff
(100 %id)
DQ778120 testis .r 1 to 2241 1 to 2241 T177A tiling clone,   2241/2241
(100 %)
1 diff
(100.0 %id)
DQ778119 testis .s 1 to 2964 1 to 2964 T177A tiling clone,   2964/2964
(100 %)
1 diff
(100.0 %id)
DQ778114 testis .t 1 to 1975 1 to 1975 T177A tiling clone, AAA   1975/1975
(100 %)
2 diff
(99.9 %id)
DQ778127 testis .u 1 to 2126 9 to 2133 H8T K9S P10Q K11R T12R ... tiling clone, AAA   2125/2133
(99 %)
9 diff
(99.6 %id)
DQ778129 testis .va 1 to 896 9 to 904 exact tiling clone,   896/904
(99 %)
6 diff
(99.4 %id)
DQ778128 testis .vb 1 to 1619 9 to 1627 exact tiling clone,   1619/1627
(99 %)
6 diff
(99.7 %id)
DQ778130 testis .vc 1 to 745 1 to 745 exact tiling clone,   745/745
(100 %)
0 diff
(100 %id)
DQ778131 testis .vd 1 to 605 1 to 605 exact tiling clone,   605/605
(100 %)
0 diff
(100 %id)
BM668579.
matches multiple genes
eye, Retina Foveal and Macular .vd 347 to 943 615 to 19   AAA also hits gene HMGB1L5 597/602
(99 %)
17 diff
(97.2 %id)
BC137482 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .vd 366 to 1098 1 to 733   tiling clone,   733/733
(100 %)
0 diff
(100 %id)
BC137483 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .vd 366 to 1089 1 to 724       724/724
(100 %)
0 diff
(100 %id)
TI_1959499977   .vd 366 to 1098 46 to 778       733/1218
(60 %)
1 diff
(100.0 %id)
TI_1959499987   .vd 366 to 1098 794 to 62       733/1259
(58 %)
0 diff
(100 %id)
AW270920 Kidney .vd 1070 to 1462 1 to 393   tiling clone, Submitted on the opposite strand 393/393
(100 %)
1 diff
(99.8 %id)
AL705921 human skeletal muscle .ve-u 1 to 840 1 to 840 D58* tiling clone,   840/842
(99 %)
11 diff
(98.7 %id)
BX282332 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .vf 1 to 501 1 to 501 exact tiling clone,   501/501
(100 %)
0 diff
(100 %id)
TI_1607547641   Gene CTCFLandHMGB1L1, variant not shown         This clone was ignored    
DQ778117 testis Gene CTCFLandHMGB1L1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc, .vd, .ve-u, .vf Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI