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Gene CTAG2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
35 supporting clones for gene CTAG2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AJ223040   .a 1 to 993 1 to 993 exact tiling clone,   993/1002
(99 %)
1 diff
(100.0 %id)
NM_020994.3   .a 1 to 998 1 to 998 exact RefSeq,   998/1002
(99 %)
5 diff
(99.6 %id)
AJ012835 melanoma .a 10 to 987 1 to 978 exact tiling clone, AAA   978/978
(100 %)
0 diff
(100 %id)
BC002833 Placenta, choriocarcinoma .a 47 to 987 1 to 941 Q6R Q89E available from MGC, AAA   941/941
(100 %)
3 diff
(99.7 %id)
TI_57190237   .a 47 to 902 56 to 911 G7A T8Q G10V S11R T12R ...     856/857
(99 %)
18 diff
(97.9 %id)
BI856831 breast, mammary adenocarcinoma, cell line .a 48 to 902 1 to 855 G7A T8Q G10V S11R T12R ...     855/856
(99 %)
18 diff
(97.9 %id)
BG575764 breast, mammary adenocarcinoma, cell line .a 52 to 819 1 to 769 G7C G29A N30M A31L G32A ...     769/770
(99 %)
17 diff
(97.8 %id)
BX279602 breast, mammary adenocarcinoma, cell line .a 53 to 510 1 to 458       458/458
(100 %)
0 diff
(100 %id)
TI_57192472   .a 53 to 919 58 to 923 G7A T8Q G10V S11R T12R ...     866/867
(99 %)
19 diff
(97.9 %id)
BI861547 breast, mammary adenocarcinoma, cell line .a 54 to 919 1 to 865 G7A T8Q G10V S11R T12R ...     865/866
(99 %)
19 diff
(97.9 %id)
BE276194 melanotic melanoma, skin .a 65 to 613 1 to 559       559/559
(100 %)
13 diff
(97.7 %id)
BE390259 endometrium, adenocarcinoma cell line, uterus .a 65 to 648 1 to 586       586/586
(100 %)
11 diff
(98.2 %id)
BE387918 endometrium, adenocarcinoma cell line, uterus .a 66 to 563 1 to 511       511/511
(100 %)
25 diff
(95.2 %id)
BE388562 endometrium, adenocarcinoma cell line, uterus .a 66 to 651 1 to 603       603/674
(89 %)
36 diff
(94.7 %id)
BE391232 endometrium, adenocarcinoma cell line, uterus .a 66 to 768 1 to 703       703/739
(95 %)
46 diff
(93.8 %id)
BE274123 melanotic melanoma, skin .a 70 to 750 1 to 684       684/689
(99 %)
23 diff
(96.7 %id)
BE408892 choriocarcinoma, placenta .a 91 to 697 37 to 657       621/800
(77 %)
34 diff
(95.8 %id)
CA424840 cell lines, Chondrosarcoma .a 442 to 987 564 to 19   AAA   546/546
(100 %)
1 diff
(99.9 %id)
NM_172377.3   .b 1 to 769 1 to 769 exact RefSeq,   769/773
(99 %)
5 diff
(99.4 %id)
BM797218 Ascites, stomach .b 1 to 377 1 to 377   tiling clone,   377/377
(100 %)
2 diff
(99.5 %id)
AJ012834 melanoma .b 12 to 758 1 to 747 exact tiling clone, AAA   747/747
(100 %)
0 diff
(100 %id)
AJ223041   .b 13 to 759 1 to 747 exact     747/755
(98 %)
1 diff
(99.9 %id)
AY679088 gastric cancer .b 13 to 758 1 to 746 Q6R     746/746
(100 %)
1 diff
(99.9 %id)
AY679089 hepatocellular carcinoma; gastric cancer .b 13 to 758 1 to 746 Q6R Q89E     746/746
(100 %)
3 diff
(99.6 %id)
BC113998 PCR rescued clones .b 21 to 726 1 to 706 Q6R Q89E     706/706
(100 %)
3 diff
(99.6 %id)
BC128045 PCR rescued clones .b 21 to 726 1 to 706 Q6R Q89E     706/706
(100 %)
3 diff
(99.6 %id)
BI859796 breast, mammary adenocarcinoma, cell line .b 27 to 507 1 to 488       488/764
(63 %)
16 diff
(98.0 %id)
TI_57188868   .b 27 to 507 49 to 536       488/764
(63 %)
16 diff
(98.0 %id)
BE410952 choriocarcinoma, placenta .b 39 to 421 1 to 383       383/383
(100 %)
11 diff
(97.2 %id)
BM719406 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 53 to 364 1 to 312   fully sequenced,   312/312
(100 %)
0 diff
(100 %id)
BE410697 choriocarcinoma, placenta .b 74 to 718 1 to 646       646/646
(100 %)
14 diff
(97.9 %id)
AJ012833 melanoma .b 96 to 758 1 to 663   AAA   663/663
(100 %)
0 diff
(100 %id)
BE385880 melanotic melanoma, skin .b 175 to 752 589 to 3     Submitted on the opposite strand 587/852
(68 %)
23 diff
(97.4 %id)
BU629220 cell lines, Chondrosarcoma .b 181 to 758 596 to 19   AAA   578/578
(100 %)
0 diff
(100 %id)
BM684237 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 303 to 758 474 to 19   fully sequenced, AAA   456/456
(100 %)
0 diff
(100 %id)
BC114933 PCR rescued clones Gene CTAG2, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI