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Gene CSPG4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
136 supporting clones for gene CSPG4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_001897.4   .a 1 to 8289 1 to 8289 exact RefSeq, AAA   8289/8289
(100 %)
0 diff
(100 %id)
BP363063 lung .a 1 to 581 1 to 581   tiling clone,   581/581
(100 %)
3 diff
(99.5 %id)
BP362998 lung .a 13 to 595 1 to 583       583/583
(100 %)
0 diff
(100 %id)
CB044012 colon, juvenile granulosa tumor .a 15 to 671 1 to 657       657/657
(100 %)
5 diff
(99.3 %id)
AY359468   .a 94 to 7104 1 to 7011   tiling clone,   7011/7011
(100 %)
3 diff
(100.0 %id)
X96753   .a 94 to 7988 1 to 7896   tiling clone, AAA   7896/7896
(100 %)
30 diff
(99.7 %id)
BM150521 leukopheresis .a 1541 to 1797 1 to 260       260/262
(99 %)
11 diff
(95.9 %id)
BM151018 leukopheresis .a 1541 to 1991 1 to 452       452/452
(100 %)
14 diff
(97.0 %id)
BF530254 anaplastic oligodendroglioma with 1p/19qloss, brain .a 2077 to 2828 1 to 750       750/1001
(74 %)
20 diff
(98.1 %id)
BF930900 nervous_tumor .a 2175 to 2521 349 to 1     Submitted on the opposite strand 349/349
(100 %)
2 diff
(99.5 %id)
BP287116 lung .a 2495 to 3077 1 to 582       582/582
(100 %)
5 diff
(99.2 %id)
BF755747 colon .a 2579 to 3100 550 to 31     Submitted on the opposite strand 520/554
(93 %)
0 diff
(100 %id)
CN291123 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2808 to 3340 1 to 533       533/533
(100 %)
0 diff
(100 %id)
BF740309 bocio_tumor .a 2841 to 3152 10 to 321       312/321
(97 %)
0 diff
(100 %id)
BQ722444 sympathetic trunk .a 2856 to 3430 1 to 579       579/1010
(57 %)
14 diff
(98.7 %id)
BM152731 leukopheresis .a 2894 to 3396 503 to 1       503/503
(100 %)
1 diff
(99.9 %id)
BM151790 leukopheresis .a 3094 to 3396 303 to 1       303/303
(100 %)
6 diff
(98.1 %id)
BQ229148 embryonal carcinoma, cell line, testis .a 3621 to 4479 1 to 863       863/885
(97 %)
14 diff
(98.5 %id)
AI366351 brain, oligodendroglioma .a 3643 to 4122 480 to 1       480/480
(100 %)
4 diff
(99.2 %id)
CN291119 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 3863 to 4228 1 to 366       366/366
(100 %)
5 diff
(98.7 %id)
BU167327 eye, retinoblastoma .a 3935 to 4545 60 to 671       612/1007
(60 %)
5 diff
(99.6 %id)
BG259493 embryonal carcinoma, cell line, testis .a 3978 to 4740 1 to 758       758/925
(81 %)
19 diff
(98.0 %id)
AI458875 pooled .a 4021 to 4521 536 to 37   AAA   500/512
(97 %)
13 diff
(97.5 %id)
CD172355 White Matter .a 4036 to 4543 1 to 508       508/893
(56 %)
1 diff
(99.9 %id)
CK000447 mixed .a 4588 to 5397 1 to 812       812/812
(100 %)
8 diff
(99.1 %id)
BM551728 melanotic melanoma, skin .a 5071 to 5791 1 to 731       731/1165
(62 %)
15 diff
(98.8 %id)
CD613246   .a 5098 to 5729 15 to 639       625/642
(97 %)
16 diff
(97.6 %id)
BF961321 nervous_normal .a 5104 to 5574 35 to 496       462/503
(91 %)
13 diff
(97.5 %id)
CN291120 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 5386 to 6071 1 to 687       687/687
(100 %)
2 diff
(99.8 %id)
AL138007 amygdala .a 5480 to 5954 1 to 475       475/475
(100 %)
1 diff
(99.8 %id)
BF346647 anaplastic oligodendroglioma with 1p/19qloss, brain .a 5538 to 6290 1 to 758       758/1137
(66 %)
24 diff
(97.9 %id)
BG818098 anaplastic oligodendroglioma with 1p/19qloss, brain .a 5600 to 6339 1 to 739       739/914
(80 %)
16 diff
(98.3 %id)
CN291121 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 5601 to 6077 1 to 477       477/477
(100 %)
2 diff
(99.6 %id)
BF447453 sympathetic trunk .a 5818 to 6217 400 to 1       400/403
(99 %)
12 diff
(97.1 %id)
BF527919 anaplastic oligodendroglioma with 1p/19qloss, brain .a 5824 to 6597 1 to 764       764/925
(82 %)
37 diff
(96.0 %id)
BQ893118 dorsal root ganglia .a 5929 to 6797 1 to 874       874/899
(97 %)
23 diff
(97.5 %id)
BP266429 thyroid .a 6092 to 6668 1 to 577       577/577
(100 %)
3 diff
(99.5 %id)
R53652 whole brain .a 6113 to 6511 1 to 397       397/429
(92 %)
9 diff
(98.0 %id)
BE727965 melanotic melanoma, skin .a 6184 to 6968 1 to 777       777/779
(99 %)
16 diff
(98.0 %id)
CF272486 Brain glioblastoma .a 6210 to 7048 1 to 850       850/863
(98 %)
12 diff
(98.7 %id)
CD514281 White Matter .a 6259 to 7013 32 to 793       762/938
(81 %)
11 diff
(98.9 %id)
BG761619 melanotic melanoma, high MDR (cell line), skin .a 6284 to 7110 1 to 837       837/848
(98 %)
22 diff
(97.5 %id)
BG765670 melanotic melanoma, high MDR (cell line), skin .a 6284 to 7158 1 to 867       867/869
(99 %)
15 diff
(98.3 %id)
CO245472 Chondrosarcoma Lung Metastasis cell lines, lung .a 6299 to 6970 1 to 668       668/824
(81 %)
11 diff
(98.7 %id)
BG393595 embryonal carcinoma, cell line, testis .a 6410 to 7226 1 to 813       813/1111
(73 %)
37 diff
(96.7 %id)
BG015442 placenta_normal .a 6482 to 6622 1 to 141       141/141
(100 %)
0 diff
(100 %id)
BF527278 anaplastic oligodendroglioma with 1p/19qloss, brain .a 6484 to 7240 1 to 744       744/964
(77 %)
35 diff
(96.4 %id)
BG762021 melanotic melanoma, high MDR (cell line), skin .a 6520 to 7352 1 to 834       834/834
(100 %)
21 diff
(97.5 %id)
BC033194 Skin, melanotic melanoma, high MDR. .a 6521 to 8259 1 to 1740   available from MGC, AAA   1740/1740
(100 %)
5 diff
(99.8 %id)
TI_57183226   .a 6530 to 7367 34 to 868       835/869
(96 %)
15 diff
(98.3 %id)
BI769212 pooled lung and spleen .a 6531 to 7367 1 to 834       834/835
(99 %)
15 diff
(98.3 %id)
BG476684 melanotic melanoma, skin .a 6532 to 7455 1 to 917       917/920
(99 %)
20 diff
(97.9 %id)
R61690 whole brain .a 6534 to 6994 1 to 475       475/482
(98 %)
6 diff
(98.8 %id)
H15080 whole brain .a 6534 to 6976 1 to 449       449/449
(100 %)
17 diff
(96.3 %id)
H16852 whole brain .a 6534 to 6972 1 to 444       444/444
(100 %)
11 diff
(97.6 %id)
H17832 whole brain .a 6563 to 6915 1 to 357       357/360
(99 %)
9 diff
(97.5 %id)
AA232985 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 6714 to 6975 1 to 262       262/262
(100 %)
15 diff
(94.3 %id)
T49467 placenta .a 6760 to 7080 1 to 324       324/370
(87 %)
8 diff
(97.9 %id)
BG765234 melanotic melanoma, high MDR (cell line), skin .a 6774 to 7515 1 to 742       742/742
(100 %)
13 diff
(98.3 %id)
CD613248   .a 6821 to 7549 734 to 7       728/737
(98 %)
0 diff
(100 %id)
CD613249   .a 6825 to 7549 1 to 730       730/739
(98 %)
11 diff
(98.6 %id)
BM704556 eye, optic nerve .a 6857 to 7450 1 to 594   fully sequenced,   594/594
(100 %)
1 diff
(99.9 %id)
BQ676783 melanotic melanoma, cell line, skin .a 6888 to 7272 1 to 386       386/1348
(28 %)
12 diff
(99.2 %id)
BQ679337 melanotic melanoma, cell line, skin .a 6888 to 7779 1 to 899       899/910
(98 %)
19 diff
(98.0 %id)
W44324 senescent fibroblast .a 7011 to 7486 1 to 481   fully sequenced,   481/481
(100 %)
29 diff
(94.0 %id)
AW852874 colon .a 7018 to 7433 431 to 12       420/431
(97 %)
0 diff
(100 %id)
AW068816 Bone, Hip .a 7025 to 7522 9 to 507       499/507
(98 %)
0 diff
(100 %id)
BU169118 melanotic melanoma, cell line, skin .a 7045 to 7709 23 to 691       669/984
(67 %)
7 diff
(99.3 %id)
BU196708 melanotic melanoma, cell line, skin .a 7045 to 7562 31 to 551       521/1085
(48 %)
0 diff
(100 %id)
BQ679485 melanotic melanoma, cell line, skin .a 7045 to 7823 8 to 792   tiling clone,   785/950
(82 %)
11 diff
(98.9 %id)
BU190456 melanotic melanoma, cell line, skin .a 7050 to 7773 1 to 725       725/898
(80 %)
10 diff
(98.9 %id)
BU162530 melanotic melanoma, cell line, skin .a 7050 to 7775 1 to 738       738/995
(74 %)
29 diff
(97.1 %id)
BU166818 melanotic melanoma, cell line, skin .a 7050 to 7776 1 to 730       730/942
(77 %)
11 diff
(98.9 %id)
BQ684623 melanotic melanoma, cell line, skin .a 7050 to 7968 1 to 931       931/989
(94 %)
42 diff
(95.8 %id)
BQ680275 melanotic melanoma, cell line, skin .a 7050 to 7767 1 to 720       720/957
(75 %)
15 diff
(98.5 %id)
BU174691 melanotic melanoma, cell line, skin .a 7050 to 7527 1 to 479       479/1033
(46 %)
8 diff
(99.3 %id)
BQ683037 melanotic melanoma, cell line, skin .a 7050 to 7536 1 to 488       488/950
(51 %)
14 diff
(98.6 %id)
BQ677440 melanotic melanoma, cell line, skin .a 7050 to 7771 1 to 731       731/1003
(72 %)
17 diff
(98.4 %id)
BQ681003 melanotic melanoma, cell line, skin .a 7050 to 7852 1 to 807       807/933
(86 %)
23 diff
(97.6 %id)
BQ680689 melanotic melanoma, cell line, skin .a 7050 to 7443 1 to 395       395/1052
(37 %)
11 diff
(99.0 %id)
BU191261 melanotic melanoma, cell line, skin .a 7050 to 7780 1 to 739       739/906
(81 %)
23 diff
(97.5 %id)
BG818368 anaplastic oligodendroglioma with 1p/19qloss, brain .a 7102 to 7839 41 to 801   AAA   761/976
(77 %)
47 diff
(95.2 %id)
TI_154127580   .a 7109 to 7988 973 to 110   AAA   864/989
(87 %)
18 diff
(98.2 %id)
BF932981 nervous_tumor .a 7188 to 7441 9 to 262       254/262
(96 %)
0 diff
(100 %id)
BF933051 nervous_tumor .a 7188 to 7381 9 to 202       194/202
(96 %)
0 diff
(100 %id)
N85469   .a 7222 to 7404 1 to 182       182/186
(97 %)
7 diff
(96.3 %id)
BG925880 cartilage .a 7249 to 7690 83 to 524       442/456
(96 %)
0 diff
(100 %id)
AA433835   .a 7276 to 7701 1 to 422       422/422
(100 %)
8 diff
(98.2 %id)
CA444264 lung, Metastatic Chondrosarcoma .a 7316 to 7988 691 to 19   AAA   673/673
(100 %)
4 diff
(99.5 %id)
BU160732 melanotic melanoma, skin .a 7324 to 8140 1 to 822       822/847
(97 %)
21 diff
(97.6 %id)
CA428796 Cell Line, Chondrosarcoma .a 7333 to 7988 674 to 19   AAA   656/656
(100 %)
0 diff
(100 %id)
BQ017146 lung, Metastatic Chondrosarcoma .a 7353 to 7990 654 to 17   AAA   638/638
(100 %)
3 diff
(99.6 %id)
CA417234 Chondrosarcoma Cell line .a 7366 to 7988 641 to 19   AAA   623/623
(100 %)
0 diff
(100 %id)
BM671697 eye, optic nerve .a 7416 to 7988 591 to 19   fully sequenced, AAA   573/573
(100 %)
9 diff
(98.5 %id)
CN291122 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 7431 to 7959 1 to 529       529/529
(100 %)
3 diff
(99.5 %id)
CB044011 colon, juvenile granulosa tumor .a 7448 to 7988 578 to 38   AAA   541/541
(100 %)
14 diff
(97.5 %id)
W44385 senescent fibroblast .a 7472 to 7988 541 to 15   fully sequenced, AAA   527/527
(100 %)
15 diff
(97.2 %id)
BF987121 placenta_normal .a 7473 to 7743 14 to 284       271/299
(90 %)
4 diff
(98.7 %id)
AI423029 brain, glioblastoma (pooled) .a 7487 to 7988 502 to 1       502/502
(100 %)
0 diff
(100 %id)
R53541 whole brain .a 7517 to 7989 483 to 8       476/484
(98 %)
0 diff
(100 %id)
BQ576092 Chondrosarcoma Grade II, Left Pelvis .a 7526 to 7988 481 to 19   AAA   463/463
(100 %)
4 diff
(99.2 %id)
BG056295 brain, glioblastoma with probably TP53 mutation andwithout EGFR amplification .a 7533 to 7989 457 to 1       457/457
(100 %)
2 diff
(99.6 %id)
AW082096 esophagus, squamous cell carcinoma .a 7546 to 7989 452 to 9   tiling clone,   444/452
(98 %)
0 diff
(100 %id)
AI445873 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 7554 to 7987 435 to 1       435/435
(100 %)
1 diff
(99.8 %id)
AI476709 colon, moderately-differentiated adenocarcinoma .a 7556 to 7965 483 to 51   AAA   433/463
(93 %)
0 diff
(100 %id)
BG927466 cartilage .a 7567 to 7988 88 to 509   AAA   422/439
(96 %)
0 diff
(100 %id)
BQ014929 Chondrosarcoma, Left Pubic Bone .a 7568 to 8287 739 to 19   AAA   721/722
(99 %)
6 diff
(99.2 %id)
AA937420 bowel (skin primary), metastatic melanoma to bowel .a 7570 to 7989 423 to 5       419/423
(99 %)
0 diff
(100 %id)
BQ427468 melanotic melanoma, skin .a 7591 to 7993 35 to 443       409/747
(54 %)
13 diff
(98.3 %id)
TI_154020256   .a 7598 to 8289 786 to 96   AAA   691/691
(100 %)
5 diff
(99.3 %id)
AW513793 colon, juvenile granulosa tumor .a 7602 to 7988 397 to 11   AAA   387/387
(100 %)
2 diff
(99.5 %id)
T49468 placenta .a 7607 to 7989 386 to 1       386/387
(99 %)
15 diff
(96.2 %id)
BG222349 brain, glioblastoma with probably TP53 mutation andwithout EGFR amplification .a 7611 to 7985 398 to 23   AAA   376/376
(100 %)
5 diff
(98.7 %id)
BG819158 anaplastic oligodendroglioma with 1p/19qloss, brain .a 7616 to 7987 35 to 406       372/510
(72 %)
2 diff
(99.7 %id)
AI446159 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 7619 to 7989 378 to 8       371/378
(98 %)
0 diff
(100 %id)
AI276983 placenta .a 7633 to 7988 373 to 18   AAA   356/356
(100 %)
0 diff
(100 %id)
AI337443 colon, colon tumor, RER+ .a 7650 to 7988 339 to 1       339/339
(100 %)
0 diff
(100 %id)
BE221029 malignant melanoma, metastatic to lymphnode, skin .a 7692 to 7989 297 to 1       297/297
(100 %)
4 diff
(98.7 %id)
AW451311   .a 7699 to 7988 307 to 18   AAA   290/296
(97 %)
2 diff
(99.4 %id)
CA438367 lung, Metastatic Chondrosarcoma .a 7699 to 8289 607 to 17   tiling clone, AAA   591/591
(100 %)
3 diff
(99.5 %id)
AI590754 brain, tumor, 5 pooled (see description) .a 7704 to 7989 287 to 2       286/287
(99 %)
0 diff
(100 %id)
CB048137 Prostate .a 7707 to 7988 306 to 25   AAA   282/291
(96 %)
3 diff
(99.0 %id)
CB048863 Prostate .a 7707 to 7988 10 to 291   fully sequenced, AAA   282/291
(96 %)
0 diff
(100 %id)
AI799851 Prostate .a 7740 to 7989 257 to 6       252/257
(98 %)
0 diff
(100 %id)
BF222195 Prostate .a 7740 to 7988 249 to 1       249/249
(100 %)
3 diff
(98.8 %id)
TI_151749726   .a 7747 to 8283 634 to 87       548/1039
(52 %)
0 diff
(100 %id)
BM704946 eye, RPE and Choroid .a 7747 to 8039 1 to 293   fully sequenced,   293/293
(100 %)
3 diff
(99.0 %id)
CB048862 Prostate .a 7752 to 7988 261 to 25   fully sequenced, AAA   237/237
(100 %)
3 diff
(98.8 %id)
BE858653 brain, glioblastoma (pooled) .a 7774 to 8282 514 to 6       509/514
(99 %)
0 diff
(100 %id)
BE857703 Prostate .a 7782 to 8290 513 to 5   tiling clone,   509/513
(99 %)
0 diff
(100 %id)
BG912346 anaplastic oligodendroglioma with 1p/19qloss, brain .a 7817 to 7988 1 to 172   AAA   172/172
(100 %)
0 diff
(100 %id)
H17833 whole brain .a 7826 to 8287 477 to 16   AAA   462/463
(99 %)
19 diff
(95.9 %id)
CA413399 Knee, Osteoarthritic Cartilage .a 7839 to 7987 167 to 19   AAA   149/149
(100 %)
3 diff
(98.0 %id)
R61691 whole brain .a 7848 to 8287 464 to 15   AAA   450/450
(100 %)
61 diff
(86.5 %id)
H16744 whole brain .a 7890 to 8287 409 to 14   AAA   396/405
(97 %)
10 diff
(97.6 %id)
AI127907 uterus .a 7923 to 8287 384 to 20   AAA   365/365
(100 %)
4 diff
(99.0 %id)
AW131432 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 7936 to 8289 379 to 25   AAA   355/355
(100 %)
16 diff
(95.5 %id)
H15081 whole brain .a 7993 to 8287 310 to 16   AAA   295/295
(100 %)
5 diff
(98.4 %id)
BU736886 eye, RPE and Choroid .a 8009 to 8282 292 to 19   fully sequenced, AAA   274/274
(100 %)
1 diff
(99.7 %id)
AI473365 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 8017 to 8287 285 to 15   AAA   271/271
(100 %)
2 diff
(99.3 %id)
AI283926 esophagus, squamous cell carcinoma .a 8054 to 8287 280 to 47   AAA   234/234
(100 %)
16 diff
(93.2 %id)
AI452449 pooled .b-u 1 to 570 573 to 4 exact tiling clone,   570/573
(99 %)
0 diff
(100 %id)
AI802991 pooled .b-u 213 to 570 361 to 4 exact     358/361
(99 %)
0 diff
(100 %id)
BC128110 PCR rescued clones Gene CSPG4, variant not shown         This clone was ignored    
AI656851 pooled germ cell tumors Gene CSPG4, variant not shown         Suspected internal deletion, this clone was ignored    
BF062585 colon, colon tumor, RER+ Gene CSPG4, variant not shown         Suspected internal deletion, this clone was ignored    
BE275182 melanotic melanoma, skin Gene CSPG4, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI