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Gene CRTAMTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
77 supporting clones for gene CRTAM back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CD642037 pooled .a 1 to 595 7 to 598       598/708
(84 %)
7 diff
(99.1 %id)
CD523397 pooled .a 1 to 542 5 to 553       553/856
(64 %)
19 diff
(97.8 %id)
CD641796 pooled .a 1 to 678 5 to 676       676/681
(99 %)
15 diff
(97.8 %id)
BC070266 Blood, peripheral blood mononuclear cells(PBMC) cytoplasmic poly A RNA is pooled sample from 3 and6 hr after stimulation with PMA and Ionomycin. Thesereagents are used to activate T- cells that results inlymphokine and cytokine production. .a 1 to 2461 4 to 2464 A65V A315T A368G tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 2464/2464
(100 %)
6 diff
(99.8 %id)
CD640439 pooled .a 1 to 690 4 to 686       686/740
(92 %)
19 diff
(97.5 %id)
CD640427 pooled .a 1 to 604 4 to 604       604/711
(84 %)
12 diff
(98.4 %id)
AK313578 Spleen .a 1 to 1228 2 to 1229 V294M K321R tiling clone,   1229/1229
(100 %)
2 diff
(99.9 %id)
DA943617 Spleen .a 1 to 579 2 to 585   capped   584/584
(100 %)
5 diff
(99.2 %id)
DN995710 breast cancer, Mammary gland (cancer tissue) .a 8 to 429 1 to 422       422/422
(100 %)
5 diff
(98.9 %id)
DB163623 thymus .a 38 to 629 2 to 593   capped   592/592
(100 %)
1 diff
(99.9 %id)
DA952399 Spleen .a 42 to 600 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
AF001622   .a 47 to 2468 1 to 2422 K321R tiling clone,   2422/2425
(99 %)
7 diff
(99.8 %id)
EL736544 mixed .a 47 to 664 1 to 618       618/621
(99 %)
5 diff
(99.2 %id)
NM_019604.2   .a 47 to 2468 1 to 2422 exact RefSeq,   2422/2422
(100 %)
3 diff
(99.9 %id)
TI_1948234958   .a 47 to 729 134 to 816   fully sequenced,   683/816
(83 %)
11 diff
(98.7 %id)
BM919441 pooled pancreas and spleen .a 92 to 862 9 to 780       772/1046
(73 %)
18 diff
(98.3 %id)
TI_1948234959   .a 668 to 1234 690 to 124   fully sequenced,   567/690
(82 %)
7 diff
(99.0 %id)
DC303451 cerebellum .a 690 to 1249 1 to 560       560/560
(100 %)
2 diff
(99.7 %id)
DA055747 cerebellum .a 696 to 1254 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
DA083563 cerebellum .a 696 to 1146 2 to 452   capped   451/451
(100 %)
7 diff
(98.5 %id)
DA054310 cerebellum .a 702 to 1276 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DA128554 cerebellum .a 702 to 1281 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
AA322933 brain, cerebellum .a 714 to 1010 1 to 297       297/311
(95 %)
3 diff
(99.1 %id)
DA070502 cerebellum .a 722 to 1272 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
AA322787 brain, cerebellum .a 727 to 926 1 to 201       201/201
(100 %)
1 diff
(99.6 %id)
BF434560 Kidney .a 878 to 1427 550 to 1       550/550
(100 %)
1 diff
(99.9 %id)
AI693616 carcinoid, lung .a 884 to 1428 545 to 1       545/545
(100 %)
10 diff
(98.2 %id)
CD639624 pooled .a 944 to 1649 1 to 698       698/763
(91 %)
18 diff
(97.7 %id)
BF445107 carcinoid, lung .a 975 to 1431 457 to 1   tiling clone,   457/457
(100 %)
1 diff
(99.8 %id)
AW137831   .a 1065 to 1435 381 to 12       370/381
(97 %)
0 diff
(100 %id)
BG205621   .a 1106 to 1834 1 to 734       734/736
(99 %)
28 diff
(96.2 %id)
BG231751 blood, lymphocyte .a 1132 to 1647 526 to 12   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 515/515
(100 %)
7 diff
(98.7 %id)
CK004240 brain/CNS, Human Brain - Cerebellar Cortex .a 1566 to 2202 1 to 634       634/642
(98 %)
12 diff
(98.2 %id)
CA309993 Alveolar Macrophage, lung .a 1793 to 2466 687 to 14   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 674/674
(100 %)
2 diff
(99.8 %id)
BG058725 blood, lymphocyte .a 1987 to 2466 480 to 1       480/480
(100 %)
3 diff
(99.4 %id)
BP307158   .a 2041 to 2468 1 to 428       428/582
(73 %)
3 diff
(99.5 %id)
DC303244 cerebellum .b 1 to 567 1 to 567   tiling clone,   567/567
(100 %)
3 diff
(99.5 %id)
DC305734 cerebellum .b 10 to 516 1 to 507       507/507
(100 %)
1 diff
(99.9 %id)
DC303382 cerebellum .b 23 to 593 1 to 573       573/573
(100 %)
3 diff
(99.5 %id)
AA322525 brain, cerebellum .b 27 to 358 1 to 332       332/332
(100 %)
0 diff
(100 %id)
DC302311 cerebellum .b 32 to 606 1 to 576       576/576
(100 %)
3 diff
(99.5 %id)
DC303021 cerebellum .b 32 to 594 1 to 563       563/563
(100 %)
3 diff
(99.5 %id)
DC304241 cerebellum .b 32 to 607 1 to 576       576/576
(100 %)
1 diff
(99.9 %id)
DC304912 cerebellum .b 32 to 598 1 to 567   tiling clone,   567/567
(100 %)
0 diff
(100 %id)
DC305542 cerebellum .b 32 to 605 1 to 574       574/574
(100 %)
3 diff
(99.5 %id)
DC302289 cerebellum .b 34 to 584 1 to 551       551/551
(100 %)
1 diff
(99.9 %id)
DC302666 cerebellum .b 49 to 599 1 to 551       551/551
(100 %)
1 diff
(99.9 %id)
DC305844 cerebellum .b 75 to 647 1 to 573       573/573
(100 %)
2 diff
(99.7 %id)
DC303130 cerebellum .b 79 to 548 1 to 469       469/469
(100 %)
2 diff
(99.6 %id)
AK293470 cerebellum .b 81 to 1281 1 to 1201   tiling clone,   1201/1201
(100 %)
2 diff
(99.9 %id)
DC302467 cerebellum .b 81 to 687 1 to 606       606/608
(99 %)
3 diff
(99.6 %id)
DC305400 cerebellum .b 89 to 637 1 to 549       549/550
(99 %)
2 diff
(99.7 %id)
DC304009 cerebellum .b 91 to 599 1 to 507       507/507
(100 %)
7 diff
(98.7 %id)
DC305391 cerebellum .b 91 to 641 1 to 551       551/551
(100 %)
2 diff
(99.7 %id)
DC305965 cerebellum .b 92 to 660 1 to 569       569/569
(100 %)
1 diff
(99.9 %id)
BX488905   .b 100 to 721 1 to 622       622/622
(100 %)
2 diff
(99.7 %id)
AB209830 brain .b 101 to 1930 1 to 1830   tiling clone,   1830/1830
(100 %)
2 diff
(99.9 %id)
DC306005 cerebellum .b 101 to 619 1 to 519       519/519
(100 %)
1 diff
(99.9 %id)
DC302971 cerebellum .b 102 to 667 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
DC305463 cerebellum .b 102 to 668 1 to 569       569/569
(100 %)
5 diff
(99.2 %id)
DC303873 cerebellum .b 103 to 658 1 to 557       557/557
(100 %)
2 diff
(99.7 %id)
DC304823 cerebellum .b 105 to 670 1 to 567       567/567
(100 %)
3 diff
(99.5 %id)
DC305476 cerebellum .b 105 to 675 1 to 571       571/571
(100 %)
2 diff
(99.7 %id)
DC307731 cerebellum .b 105 to 696 1 to 593       593/593
(100 %)
3 diff
(99.5 %id)
DC302609 cerebellum .b 107 to 688 1 to 584       584/584
(100 %)
4 diff
(99.4 %id)
DC302906 cerebellum .b 107 to 646 1 to 540       540/540
(100 %)
2 diff
(99.7 %id)
DC303146 cerebellum .b 107 to 667 1 to 561       561/561
(100 %)
1 diff
(99.9 %id)
DC304501 cerebellum .b 138 to 713 1 to 576       576/576
(100 %)
3 diff
(99.5 %id)
DC306225 cerebellum .b 141 to 715 1 to 577       577/577
(100 %)
3 diff
(99.5 %id)
DC305804 cerebellum .b 145 to 721 1 to 577       577/577
(100 %)
1 diff
(99.9 %id)
DC303922 cerebellum .b 155 to 741 1 to 587       587/587
(100 %)
1 diff
(99.9 %id)
DA589291 lung .c 1 to 592 2 to 594 K12R tiling clone, capped   593/593
(100 %)
2 diff
(99.7 %id)
TI_227715085   .c 50 to 694 744 to 100 K12R AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 645/961
(67 %)
1 diff
(99.9 %id)
CD365583 Alveolar Macrophage, lung .c 50 to 712 663 to 1 K12R tiling clone,   663/668
(99 %)
4 diff
(99.5 %id)
BX118379 carcinoid, lung .c 98 to 492 1 to 396   tiling clone,   396/396
(100 %)
1 diff
(99.8 %id)
BX488047   .c 120 to 487 1 to 368       368/368
(100 %)
1 diff
(99.8 %id)
DA067629 cerebellum .d 1 to 524 2 to 525   tiling clone, capped   524/524
(100 %)
1 diff
(99.9 %id)
DA055956 cerebellum .d 10 to 575 2 to 567 K12R tiling clone, capped   566/566
(100 %)
2 diff
(99.7 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C