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Gene CRTAC1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
231 supporting clones for gene CRTAC1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CV574550 cornea, eye .a 1 to 633 1 to 633   tiling clone,   633/633
(100 %)
0 diff
(100 %id)
CV574530 cornea, eye .a 45 to 483 1 to 439       439/439
(100 %)
5 diff
(98.9 %id)
AK001182   .a 585 to 2762 1 to 2178   tiling clone, available from FLJ,   2178/2178
(100 %)
1 diff
(100.0 %id)
AK057190 synovial membrane tissue from rheumatioidarthritis .b 1 to 2888 2 to 2889 K338* tiling clone, available from FLJ,   2889/2889
(100 %)
5 diff
(99.9 %id)
NM_018058.4   .b 1 to 2888 2 to 2889 exact RefSeq,   2889/2889
(100 %)
0 diff
(100 %id)
DA970538 synovial membrane tissue from rheumatioidarthritis .b 1 to 582 2 to 583   capped   582/804
(72 %)
1 diff
(99.9 %id)
DA153593 amygdala .b 176 to 721 2 to 549   capped   548/548
(100 %)
3 diff
(99.5 %id)
BG721807 testis .b 202 to 767 1 to 566       566/566
(100 %)
5 diff
(99.2 %id)
DA307633 hippocampus .b 206 to 797 2 to 593   capped   592/592
(100 %)
2 diff
(99.7 %id)
AJ276171 cartilage .b 207 to 2887 1 to 2681 exact tiling clone,   2681/2681
(100 %)
0 diff
(100 %id)
DB458206 testis .b 207 to 697 1 to 491       491/491
(100 %)
0 diff
(100 %id)
DB499646 hypothalamus .b 207 to 712 1 to 506       506/506
(100 %)
5 diff
(99.1 %id)
DA007507   .b 208 to 782 2 to 577   capped   576/578
(99 %)
6 diff
(99.0 %id)
DA054709 cerebellum .b 208 to 770 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA068550 cerebellum .b 208 to 777 2 to 571   capped   570/574
(99 %)
2 diff
(99.7 %id)
DA129687 alzheimer cortex .b 208 to 746 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DA520058 brain .b 208 to 769 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA690515   .b 208 to 464 2 to 258   capped   257/257
(100 %)
0 diff
(100 %id)
DA711421   .b 208 to 777 2 to 574   capped   573/577
(99 %)
4 diff
(99.4 %id)
DA712553   .b 208 to 766 2 to 576   capped   575/575
(100 %)
13 diff
(97.8 %id)
DA712613   .b 208 to 766 2 to 573   capped   572/572
(100 %)
11 diff
(98.1 %id)
DA742103   .b 208 to 687 2 to 482   capped   481/481
(100 %)
2 diff
(99.6 %id)
DA772474 brain .b 208 to 569 2 to 363   capped   362/362
(100 %)
0 diff
(100 %id)
DA775362 brain .b 208 to 628 2 to 422   capped   421/421
(100 %)
1 diff
(99.8 %id)
DA874810 Prostate .b 208 to 771 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DA970466 synovial membrane tissue from rheumatioidarthritis .b 208 to 802 2 to 598   capped   597/597
(100 %)
5 diff
(99.2 %id)
DA970546 synovial membrane tissue from rheumatioidarthritis .b 208 to 876 2 to 670   capped   669/669
(100 %)
3 diff
(99.6 %id)
DA970550 synovial membrane tissue from rheumatioidarthritis .b 208 to 975 2 to 772   capped   769/771
(99 %)
9 diff
(98.9 %id)
DA972284 synovial membrane tissue from rheumatioidarthritis .b 208 to 651 2 to 445   capped   444/444
(100 %)
0 diff
(100 %id)
DA973556 synovial membrane tissue from rheumatioidarthritis .b 208 to 724 2 to 518   capped   517/517
(100 %)
1 diff
(99.9 %id)
DA977845 synovial membrane tissue from rheumatioidarthritis .b 208 to 727 2 to 521   capped   520/520
(100 %)
1 diff
(99.9 %id)
DA991600 synovial membrane tissue from rheumatioidarthritis .b 208 to 670 2 to 464   capped   463/463
(100 %)
2 diff
(99.6 %id)
DA993894 synovial membrane tissue from rheumatioidarthritis .b 208 to 686 2 to 480   capped   479/479
(100 %)
0 diff
(100 %id)
DA994378 synovial membrane tissue from rheumatioidarthritis .b 208 to 480 2 to 275   capped   274/274
(100 %)
1 diff
(99.7 %id)
DB049546 testis .b 208 to 720 2 to 516   capped   515/515
(100 %)
3 diff
(99.5 %id)
DB177433 kidney, tumor tissue .b 208 to 724 2 to 519   capped   518/518
(100 %)
1 diff
(99.9 %id)
TI_44167530   .b 209 to 812 58 to 662       605/662
(91 %)
8 diff
(98.8 %id)
TI_45208867   .b 209 to 1007 60 to 869       810/1147
(70 %)
27 diff
(97.7 %id)
DA983043 synovial membrane tissue from rheumatioidarthritis .b 209 to 699 2 to 494   capped   493/493
(100 %)
4 diff
(99.2 %id)
DA251938 caudate nucleus .b 210 to 784 2 to 576   capped   575/587
(97 %)
4 diff
(99.4 %id)
DA263783 caudate nucleus .b 210 to 724 2 to 516   capped   515/515
(100 %)
0 diff
(100 %id)
BG716170 brain, hypothalamus .b 210 to 824 11 to 622       612/622
(98 %)
11 diff
(98.3 %id)
DA970594 synovial membrane tissue from rheumatioidarthritis .b 210 to 966 2 to 759   capped   758/767
(98 %)
13 diff
(98.4 %id)
DA972135 synovial membrane tissue from rheumatioidarthritis .b 210 to 670 2 to 463   capped   462/462
(100 %)
1 diff
(99.8 %id)
DA972577 synovial membrane tissue from rheumatioidarthritis .b 210 to 755 2 to 552   capped   551/551
(100 %)
7 diff
(98.8 %id)
DA974186 synovial membrane tissue from rheumatioidarthritis .b 210 to 750 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA982259 synovial membrane tissue from rheumatioidarthritis .b 210 to 750 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DA982707 synovial membrane tissue from rheumatioidarthritis .b 210 to 777 2 to 569   capped   568/571
(99 %)
2 diff
(99.7 %id)
DA984089 synovial membrane tissue from rheumatioidarthritis .b 210 to 721 2 to 514   capped   513/513
(100 %)
3 diff
(99.5 %id)
DA988714 synovial membrane tissue from rheumatioidarthritis .b 210 to 621 2 to 413   capped   412/412
(100 %)
1 diff
(99.8 %id)
DA995703 synovial membrane tissue from rheumatioidarthritis .b 211 to 715 2 to 509   capped   508/508
(100 %)
4 diff
(99.3 %id)
BF725127 eye, Iris .b 221 to 709 1 to 489       489/489
(100 %)
0 diff
(100 %id)
CV574710 cornea, eye .b 221 to 839 1 to 619       619/619
(100 %)
1 diff
(99.9 %id)
BI819378 pooled brain, lung, testis .b 222 to 1041 1 to 829       829/860
(96 %)
15 diff
(98.3 %id)
TI_57197588   .b 222 to 1041 31 to 859       829/890
(93 %)
20 diff
(97.8 %id)
BG708845 brain, hypothalamus .b 233 to 1068 1 to 835       835/841
(99 %)
11 diff
(98.7 %id)
BI549399 brain, hippocampus .b 233 to 812 1 to 580       580/580
(100 %)
5 diff
(99.2 %id)
BI550776 brain, hippocampus .b 233 to 1012 1 to 780       780/781
(99 %)
4 diff
(99.5 %id)
BI596960 brain, hypothalamus .b 233 to 1007 1 to 785       785/1063
(73 %)
23 diff
(97.9 %id)
CB153273 brain .b 235 to 774 1 to 540       540/540
(100 %)
1 diff
(99.9 %id)
CB152752 brain .b 236 to 774 1 to 539       539/539
(100 %)
2 diff
(99.7 %id)
BI458314 brain, hypothalamus .b 236 to 1030 1 to 800       800/804
(99 %)
12 diff
(98.6 %id)
DA592145 lung .b 237 to 807 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
AK292084 synovial membrane tissue from rheumatoidarthritis .b 238 to 2749 1 to 2512 exact     2512/2512
(100 %)
0 diff
(100 %id)
DB505552 hypothalamus .b 238 to 701 1 to 464       464/464
(100 %)
0 diff
(100 %id)
DA974664 synovial membrane tissue from rheumatioidarthritis .b 238 to 726 2 to 491   capped   490/490
(100 %)
1 diff
(99.8 %id)
DA151805 amygdala .b 239 to 813 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
DA158223 amygdala .b 239 to 811 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA396772 thalamus .b 239 to 732 2 to 495   capped   494/494
(100 %)
0 diff
(100 %id)
DA594586 lung .b 239 to 790 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA822010 pericardium .b 239 to 616 2 to 379   capped   378/378
(100 %)
1 diff
(99.8 %id)
DA872777 Prostate .b 239 to 750 2 to 513   capped   512/512
(100 %)
1 diff
(99.9 %id)
DA970574 synovial membrane tissue from rheumatioidarthritis .b 239 to 983 2 to 750   capped   749/749
(100 %)
9 diff
(98.8 %id)
DA972181 synovial membrane tissue from rheumatioidarthritis .b 239 to 813 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA974095 synovial membrane tissue from rheumatioidarthritis .b 239 to 750 2 to 513   capped   512/512
(100 %)
0 diff
(100 %id)
DA977106 synovial membrane tissue from rheumatioidarthritis .b 239 to 805 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA980771 synovial membrane tissue from rheumatioidarthritis .b 239 to 809 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA982154 synovial membrane tissue from rheumatioidarthritis .b 239 to 710 2 to 473   capped   472/472
(100 %)
0 diff
(100 %id)
DA982155 synovial membrane tissue from rheumatioidarthritis .b 239 to 738 2 to 501   capped   500/500
(100 %)
0 diff
(100 %id)
DA983534 synovial membrane tissue from rheumatioidarthritis .b 239 to 787 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA987877 synovial membrane tissue from rheumatioidarthritis .b 239 to 808 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA987902 synovial membrane tissue from rheumatioidarthritis .b 239 to 790 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA992336 synovial membrane tissue from rheumatioidarthritis .b 239 to 786 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DB170728 kidney, tumor tissue .b 239 to 811 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA251491 caudate nucleus .b 241 to 815 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
BG898358 cartilage .b 243 to 563 78 to 398       321/330
(97 %)
6 diff
(98.2 %id)
DB489702.
matches multiple genes
hypothalamus .b 244 to 700 1 to 457     also hits gene jawfarbu 457/457
(100 %)
2 diff
(99.6 %id)
DB493387 hypothalamus .b 244 to 736 1 to 493       493/493
(100 %)
2 diff
(99.6 %id)
DB495942.
matches multiple genes
hypothalamus .b 244 to 724 1 to 481     also hits gene jawfarbu 481/481
(100 %)
0 diff
(100 %id)
CD676152 eye, lens .b 245 to 822 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
BI758703 brain .b 249 to 1014 1 to 770       770/770
(100 %)
6 diff
(99.3 %id)
TI_57216471   .b 249 to 1014 1 to 770       770/770
(100 %)
6 diff
(99.3 %id)
BX460454 brain, fetal brain .b 253 to 1208 46 to 1004       959/1004
(95 %)
11 diff
(99.0 %id)
BG818593 anaplastic oligodendroglioma with 1p/19qloss, brain .b 253 to 963 15 to 729       715/729
(98 %)
16 diff
(97.9 %id)
BI824952 pooled brain, lung, testis .b 253 to 868 1 to 622       622/622
(100 %)
7 diff
(98.9 %id)
TI_57196651   .b 253 to 868 1 to 622       622/622
(100 %)
7 diff
(98.9 %id)
CV572399 cornea, eye .b 253 to 879 1 to 627       627/627
(100 %)
0 diff
(100 %id)
CV569984 cornea, eye .b 254 to 702 1 to 449       449/449
(100 %)
2 diff
(99.6 %id)
DA985778 synovial membrane tissue from rheumatioidarthritis .b 299 to 839 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DA972033 synovial membrane tissue from rheumatioidarthritis .b 300 to 561 2 to 263   capped   262/262
(100 %)
6 diff
(97.8 %id)
DA975251 synovial membrane tissue from rheumatioidarthritis .b 300 to 847 2 to 550   capped   549/549
(100 %)
6 diff
(99.0 %id)
DA973184 synovial membrane tissue from rheumatioidarthritis .b 302 to 810 2 to 510   capped   509/509
(100 %)
3 diff
(99.5 %id)
BG900984 cartilage .b 313 to 669 75 to 433       359/365
(98 %)
6 diff
(98.4 %id)
CV574926 cornea, eye .b 332 to 948 1 to 617       617/617
(100 %)
0 diff
(100 %id)
AJ279016 cartilage .b 380 to 2886 1 to 2507       2507/2507
(100 %)
0 diff
(100 %id)
DA593954 lung .b 380 to 909 24 to 553   capped   530/552
(96 %)
0 diff
(100 %id)
DA976295 synovial membrane tissue from rheumatioidarthritis .b 380 to 909 26 to 555   capped   530/554
(95 %)
0 diff
(100 %id)
DN990073 brain, whole brain .b 380 to 995 14 to 629       615/629
(97 %)
10 diff
(98.5 %id)
BP346097 synovial membrane .b 390 to 968 1 to 579       579/579
(100 %)
2 diff
(99.7 %id)
BM699706 eye, lens .b 426 to 976 1 to 551       551/551
(100 %)
0 diff
(100 %id)
BG911024 anaplastic oligodendroglioma with 1p/19qloss, brain .b 432 to 1076 1 to 646       646/735
(87 %)
6 diff
(99.2 %id)
CD628920   .b 473 to 1172 37 to 732       696/732
(95 %)
14 diff
(98.1 %id)
DA978941 synovial membrane tissue from rheumatioidarthritis .b 521 to 1058 2 to 543   capped   542/542
(100 %)
4 diff
(99.3 %id)
DA988821 synovial membrane tissue from rheumatioidarthritis .b 523 to 1031 2 to 511   capped   510/510
(100 %)
1 diff
(99.9 %id)
T77333 whole brain .b 617 to 1022 1 to 418       418/418
(100 %)
17 diff
(96.0 %id)
AU123536   .b 669 to 1271 2 to 599   capped   598/607
(98 %)
4 diff
(99.4 %id)
BC034245 Brain, anaplastic oligodendroglioma with1p/19q loss .b 738 to 2867 1 to 2130   available from MGC, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 2130/2130
(100 %)
0 diff
(100 %id)
BF527664 anaplastic oligodendroglioma with 1p/19qloss, brain .b 738 to 1488 1 to 747       747/926
(80 %)
17 diff
(98.2 %id)
CA388867 eye, RPE/choroid .b 752 to 1150 1 to 399       399/399
(100 %)
0 diff
(100 %id)
BG898009 cartilage .b 772 to 949 47 to 224       181/224
(80 %)
6 diff
(97.4 %id)
DA972006 synovial membrane tissue from rheumatioidarthritis .b 809 to 1341 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
BP345051 synovial membrane .b 810 to 1391 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BM805494 brain, hippocampus .b 863 to 1425 71 to 636       566/1418
(39 %)
34 diff
(97.7 %id)
CV574216 cornea, eye .b 868 to 1467 1 to 600       600/600
(100 %)
0 diff
(100 %id)
CV573180 cornea, eye .b 881 to 1493 1 to 613       613/613
(100 %)
0 diff
(100 %id)
CD628921   .b 898 to 1495 615 to 20       596/615
(96 %)
3 diff
(99.6 %id)
CD628922   .b 898 to 1494 1 to 596       596/617
(96 %)
10 diff
(98.4 %id)
BQ067249 pooled brain, lung, testis .b 953 to 1842 1 to 903       903/1101
(82 %)
21 diff
(98.1 %id)
DA978773 synovial membrane tissue from rheumatioidarthritis .b 970 to 1523 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
TI_1948129532   .b 981 to 1488 121 to 631       511/1134
(45 %)
17 diff
(98.6 %id)
TI_1948129533   .b 981 to 1676 121 to 824       704/1355
(51 %)
20 diff
(98.6 %id)
TI_1948129880   .b 981 to 1627 125 to 771   fully sequenced,   647/771
(83 %)
6 diff
(99.3 %id)
TI_1948130226   .b 981 to 1565 117 to 702   AAA   586/1047
(55 %)
24 diff
(97.8 %id)
TI_1948130227   .b 981 to 1778 125 to 929       805/1340
(60 %)
40 diff
(97.1 %id)
TI_1948130570   .b 981 to 1390 124 to 534       411/1126
(36 %)
19 diff
(98.4 %id)
TI_1948130571   .b 981 to 1570 121 to 713       593/1372
(43 %)
22 diff
(98.4 %id)
AI792073   .b 984 to 1673 1 to 683       683/713
(95 %)
18 diff
(97.5 %id)
CV024925 mixed .b 986 to 1576 1 to 591       591/591
(100 %)
0 diff
(100 %id)
DA975358 synovial membrane tissue from rheumatioidarthritis .b 1009 to 1566 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
CD628919   .b 1018 to 1669 653 to 6       648/653
(99 %)
1 diff
(99.9 %id)
DA974105 synovial membrane tissue from rheumatioidarthritis .b 1045 to 1622 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DR423338 eye, Pterygium .b 1048 to 1467 1 to 420       420/420
(100 %)
2 diff
(99.6 %id)
DA976418 synovial membrane tissue from rheumatioidarthritis .b 1059 to 1472 2 to 415   capped   414/414
(100 %)
0 diff
(100 %id)
DA978508 synovial membrane tissue from rheumatioidarthritis .b 1062 to 1611 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DA979060 synovial membrane tissue from rheumatioidarthritis .b 1064 to 1609 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA972789 synovial membrane tissue from rheumatioidarthritis .b 1069 to 1549 2 to 482   capped   481/481
(100 %)
0 diff
(100 %id)
BF088585 head_neck .b 1071 to 1547 30 to 507       479/508
(94 %)
8 diff
(98.5 %id)
BX451456 brain, fetal brain .b 1071 to 1941 1 to 873       873/904
(96 %)
24 diff
(97.4 %id)
BM707643 eye, RPE and Choroid .b 1113 to 1679 1 to 567       567/567
(100 %)
0 diff
(100 %id)
CV572085 cornea, eye .b 1121 to 1690 1 to 570       570/570
(100 %)
0 diff
(100 %id)
CV569964 cornea, eye .b 1134 to 1757 1 to 624       624/624
(100 %)
0 diff
(100 %id)
BX102537   .b 1184 to 1625 36 to 477       442/477
(92 %)
6 diff
(98.8 %id)
AI791928   .b 1184 to 1660 35 to 511       477/511
(93 %)
6 diff
(98.9 %id)
CV569057 cornea, eye .b 1213 to 1737 1 to 525       525/525
(100 %)
0 diff
(100 %id)
R05669 whole brain .b 1258 to 1440 1 to 185       185/185
(100 %)
2 diff
(99.0 %id)
BM688846 eye, optic nerve .b 1461 to 1588 9 to 136     Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 128/136
(94 %)
0 diff
(100 %id)
BF727258 eye, lens .b 1500 to 2135 1 to 636       636/636
(100 %)
5 diff
(99.3 %id)
BM706915 eye, optic nerve .b 1579 to 2119 8 to 549       542/549
(98 %)
8 diff
(98.6 %id)
TI_1948129881   .b 1597 to 2344 861 to 110   fully sequenced,   752/861
(87 %)
8 diff
(99.1 %id)
TI_1948130228   .b 1672 to 2344 789 to 108       682/1432
(47 %)
11 diff
(99.3 %id)
BF736863 bladder_tumor .b 1678 to 2023 350 to 5     Submitted on the opposite strand 346/350
(98 %)
1 diff
(99.8 %id)
BG899412 cartilage .b 1694 to 2028 104 to 438       335/368
(91 %)
6 diff
(98.4 %id)
TI_1948129534   .b 1700 to 2344 757 to 112       646/1482
(43 %)
10 diff
(99.4 %id)
TI_1948130572   .b 1711 to 2344 758 to 125       634/1102
(57 %)
16 diff
(98.6 %id)
TI_1948130229   .b 1732 to 2344 743 to 128       616/1089
(56 %)
9 diff
(99.2 %id)
AA317765 retina .b 1758 to 1987 1 to 230       230/231
(99 %)
0 diff
(100 %id)
BF930592 nervous_tumor .b 1792 to 2183 13 to 405       393/430
(91 %)
11 diff
(97.5 %id)
TI_1948129535   .b 1841 to 2344 629 to 126       504/1057
(47 %)
6 diff
(99.5 %id)
BM687627 eye, eye anterior segment .b 1959 to 2494 1 to 540   fully sequenced,   538/538
(100 %)
17 diff
(96.9 %id)
DR422108 eye, Pterygium .b 1977 to 2759 1 to 783       783/783
(100 %)
2 diff
(99.8 %id)
BM686884 eye, eye anterior segment .b 2007 to 2412 9 to 414     Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 406/414
(98 %)
8 diff
(98.1 %id)
TI_149313395   .b 2023 to 2888 954 to 93   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 862/993
(86 %)
21 diff
(97.9 %id)
TI_149309557   .b 2041 to 2888 921 to 84   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 838/949
(88 %)
15 diff
(98.5 %id)
BG928879 cartilage .b 2059 to 2654 80 to 676       597/606
(98 %)
7 diff
(98.9 %id)
CA393109 eye, RPE/choroid .b 2180 to 2638 1 to 459       459/459
(100 %)
1 diff
(99.8 %id)
BQ182539 Knee, Osteoarthritic Cartilage .b 2187 to 2887 719 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 701/701
(100 %)
2 diff
(99.8 %id)
CD675865 eye, lens .b 2226 to 2743 114 to 631       518/631
(82 %)
1 diff
(99.9 %id)
BU687942 lung .b 2226 to 2888 681 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 663/663
(100 %)
0 diff
(100 %id)
BQ181088 Knee, Osteoarthritic Cartilage .b 2229 to 2888 678 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 660/660
(100 %)
1 diff
(99.9 %id)
CF541406 lung .b 2229 to 2888 684 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 666/666
(100 %)
6 diff
(99.1 %id)
CN480204 Knee, Osteoarthritic Cartilage .b 2229 to 2888 678 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 660/660
(100 %)
1 diff
(99.9 %id)
BQ182286 Knee, Osteoarthritic Cartilage .b 2230 to 2880 669 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 651/651
(100 %)
0 diff
(100 %id)
CA435413 lung, Metastatic Chondrosarcoma .b 2234 to 2888 674 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 656/656
(100 %)
1 diff
(99.9 %id)
BM998053 lung, Metastatic Chondrosarcoma .b 2265 to 2888 642 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 624/624
(100 %)
5 diff
(99.2 %id)
BM694783 eye, RPE and Choroid .b 2267 to 2816 1 to 550       550/550
(100 %)
1 diff
(99.9 %id)
TI_154005263   .b 2290 to 2889 871 to 272   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 600/989
(60 %)
0 diff
(100 %id)
TI_151716100   .b 2322 to 2881 681 to 116       566/922
(61 %)
0 diff
(100 %id)
DB334706 synovial membrane tissue from rheumatioidarthritis .b 2335 to 2888 553 to 1       553/554
(99 %)
21 diff
(96.3 %id)
DB334728 synovial membrane tissue from rheumatioidarthritis .b 2345 to 2886 533 to 1       533/545
(97 %)
21 diff
(96.2 %id)
TI_151746767   .b 2345 to 2858 621 to 106       516/1121
(46 %)
0 diff
(100 %id)
DB334694 synovial membrane tissue from rheumatioidarthritis .b 2366 to 2888 526 to 1       526/526
(100 %)
9 diff
(98.3 %id)
DB334702 synovial membrane tissue from rheumatioidarthritis .b 2367 to 2888 521 to 1       521/526
(99 %)
12 diff
(97.8 %id)
DB334624 synovial membrane tissue from rheumatioidarthritis .b 2369 to 2883 530 to 6       525/530
(99 %)
0 diff
(100 %id)
DB334747 synovial membrane tissue from rheumatioidarthritis .b 2390 to 2888 510 to 1       510/514
(99 %)
18 diff
(96.5 %id)
BU727317 eye, optic nerve .b 2390 to 2888 518 to 20   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 499/499
(100 %)
1 diff
(99.8 %id)
CA434127 Bone, Subchondral Bone .b 2391 to 2888 516 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 498/498
(100 %)
0 diff
(100 %id)
AI821733   .b 2394 to 2889 498 to 3       496/498
(99 %)
0 diff
(100 %id)
AI859819 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 2394 to 2887 494 to 1       494/494
(100 %)
1 diff
(99.8 %id)
CA388866 eye, RPE/choroid .b 2396 to 2799 404 to 1       404/404
(100 %)
7 diff
(98.3 %id)
AW303812 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 2423 to 2884 463 to 2       462/463
(99 %)
0 diff
(100 %id)
BE465648 malignant melanoma, metastatic to lymphnode, skin .b 2454 to 2868 416 to 2       415/416
(99 %)
0 diff
(100 %id)
BU727696 eye, eye anterior segment .b 2464 to 2889 443 to 18   fully sequenced,   426/443
(96 %)
0 diff
(100 %id)
AA599719   .b 2493 to 2887 395 to 2       394/395
(99 %)
0 diff
(100 %id)
DB523703 testis .b 2509 to 2955 1 to 447   tiling clone, Submitted on the opposite strand 447/447
(100 %)
0 diff
(100 %id)
AA485275 lung .b 2509 to 2820 1 to 312       312/312
(100 %)
0 diff
(100 %id)
BM673713 eye, eye anterior segment .b 2518 to 2888 389 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 371/371
(100 %)
0 diff
(100 %id)
AA678776   .b 2523 to 2884 362 to 1       362/362
(100 %)
1 diff
(99.8 %id)
AA918756 Kidney .b 2524 to 2889 373 to 9       365/373
(97 %)
0 diff
(100 %id)
C00510   .b 2532 to 2815 1 to 284       284/284
(100 %)
1 diff
(99.7 %id)
AW264900 lung, two pooled squamous cell carcinomas .b 2544 to 2888 361 to 17   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 345/345
(100 %)
6 diff
(98.3 %id)
AA693462   .b 2567 to 2887 340 to 21   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 320/320
(100 %)
2 diff
(99.4 %id)
AA938499 2 pooled tumors (clear cell type), Kidney .b 2588 to 2888 301 to 1       301/301
(100 %)
0 diff
(100 %id)
BQ030009 lung, Metastatic Chondrosarcoma .b 2598 to 2888 310 to 20   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 291/291
(100 %)
0 diff
(100 %id)
AA653656   .b 2625 to 2889 266 to 2       265/266
(99 %)
0 diff
(100 %id)
DA995373 synovial membrane tissue from rheumatioidarthritis .c 1 to 542 2 to 544   tiling clone, capped   543/543
(100 %)
4 diff
(99.3 %id)
AJ421515 brain .c 286 to 2231 1 to 1946   tiling clone,   1946/1947
(99 %)
1 diff
(100.0 %id)
BF727076 eye, lens .c 286 to 465 159 to 338     Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 338/338
(100 %)
0 diff
(100 %id)
Z43948 brain, total brain .c 302 to 621 1 to 318       318/318
(100 %)
8 diff
(97.5 %id)
R60637 whole brain .c 309 to 683 1 to 376     Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 376/467
(80 %)
10 diff
(97.9 %id)
TI_153990238   .c 1585 to 2235 727 to 82       646/730
(88 %)
24 diff
(96.8 %id)
BQ637467 eye, retina .c 1595 to 2192 1 to 598       598/598
(100 %)
1 diff
(99.9 %id)
BE503986 carcinoid, lung .c 1698 to 2230 533 to 1       533/533
(100 %)
0 diff
(100 %id)
DB576831 hypothalamus .c 1751 to 2227 1 to 477     Submitted on the opposite strand 477/477
(100 %)
0 diff
(100 %id)
BE503764 carcinoid, lung .c 1758 to 2227 470 to 1       470/470
(100 %)
1 diff
(99.8 %id)
DB570776 hypothalamus .c 1766 to 2227 1 to 462     Submitted on the opposite strand 462/462
(100 %)
1 diff
(99.8 %id)
BF727075 eye, lens .c 1776 to 2227 470 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 452/452
(100 %)
0 diff
(100 %id)
R60584 whole brain .c 1779 to 2253 492 to 14   tiling clone, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 479/479
(100 %)
7 diff
(98.6 %id)
AW206230   .c 1780 to 2231 453 to 2       452/453
(99 %)
4 diff
(99.2 %id)
BP384197 pancreatic islet .c 1785 to 2180 401 to 6       396/401
(98 %)
0 diff
(100 %id)
BG820409 anaplastic oligodendroglioma with 1p/19qloss, brain .c 1863 to 2215 1 to 353   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 353/353
(100 %)
0 diff
(100 %id)
DB537861 hippocampus .c 1888 to 2233 76 to 419     Submitted on the opposite strand 349/419
(83 %)
21 diff
(95.0 %id)
F03192 brain, total brain .c 1931 to 2215 285 to 1       285/285
(100 %)
0 diff
(100 %id)
AA365484 pineal body .c 1984 to 2220 1 to 237       237/237
(100 %)
0 diff
(100 %id)
AW953971   .c 1985 to 2235 1 to 251       251/392
(64 %)
2 diff
(99.5 %id)
BM719709 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 2005 to 2232 1 to 228   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 228/228
(100 %)
0 diff
(100 %id)
BM684074 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 2142 to 2233 92 to 1   fully sequenced, Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 92/92
(100 %)
1 diff
(99.0 %id)
BQ183029 Knee, Osteoarthritic Cartilage .d 1 to 639 656 to 19 G2W tiling clone, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 638/638
(100 %)
1 diff
(99.9 %id)
DA369523 subthalamic nucleus .e 1 to 563 2 to 565 F7V L8P L9A L10A L11A ... tiling clone, capped   564/564
(100 %)
1 diff
(99.9 %id)
DA394970 thalamus .f 1 to 591 2 to 592 exact tiling clone, capped   591/591
(100 %)
0 diff
(100 %id)
BF849175 lung_normal .g 1 to 436 1 to 435 T4D G5R L6S L7M L21C ... tiling clone,   435/539
(80 %)
6 diff
(98.9 %id)
AI694498 carcinoid, lung .h 1 to 474 473 to 1 exact tiling clone,   473/473
(100 %)
3 diff
(99.4 %id)
CV570711 cornea, eye .i-u 1 to 623 1 to 624 exact tiling clone,   624/624
(100 %)
1 diff
(99.9 %id)
TI_151734387   .j-u 1 to 470 549 to 83 exact tiling clone, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 467/999
(46 %)
3 diff
(99.7 %id)
BQ187402 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .j-u 2 to 470 1 to 466 exact tiling clone, fully sequenced, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 466/466
(100 %)
3 diff
(99.4 %id)
CK300715 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .j-u 395 to 452 91 to 37   tiling clone, fully sequenced, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 55/55
(100 %)
5 diff
(91.0 %id)
AW380175 head_neck .k-u 1 to 419 189 to 602 I52S P53R A54R T55R P56L ... tiling clone,   414/612
(67 %)
6 diff
(99.1 %id)
DA981381 synovial membrane tissue from rheumatioidarthritis Gene CRTAC1, variant not shown       capped This clone was ignored    
DB009234 colon, tumor tissue Gene CRTAC1, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j-u, .k-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C