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Gene CPT2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
258 supporting clones for gene CPT2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_000098.2   .a 1 to 3092 1 to 3092 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 3092/3092
(100 %)
0 diff
(100 %id)
U09648   .a 1 to 3092 1 to 3090 exact tiling clone,   3090/3090
(100 %)
7 diff
(99.8 %id)
DA631432 Kidney .a 334 to 909 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB453042 testis .a 345 to 837 1 to 494       494/494
(100 %)
6 diff
(98.8 %id)
DA815366   .a 362 to 891 2 to 532   capped   531/531
(100 %)
2 diff
(99.7 %id)
DA606075   .a 363 to 906 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA729150   .a 367 to 1025 2 to 665   capped   664/705
(94 %)
8 diff
(98.9 %id)
AU132249   .a 370 to 1153 2 to 790   capped   789/794
(99 %)
16 diff
(98.0 %id)
DA743795   .a 371 to 888 2 to 519   capped   518/518
(100 %)
0 diff
(100 %id)
DA920876 small intestine .a 371 to 743 2 to 374   capped   373/373
(100 %)
0 diff
(100 %id)
DA042930 bladder .a 373 to 921 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DB044902 testis .a 373 to 928 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DB069435 testis .a 373 to 903 2 to 532   capped   531/531
(100 %)
1 diff
(99.9 %id)
CN291078 embryonic stem cells, cell lines H1, H7, andH9 .a 374 to 531 1 to 160       160/160
(100 %)
5 diff
(96.9 %id)
BX445773 T cells (Jurkat cell line) .a 378 to 1413 1 to 1027       1027/1027
(100 %)
15 diff
(98.6 %id)
BX462692 T cells (Jurkat cell line) .a 378 to 1038 1 to 659       659/659
(100 %)
6 diff
(99.1 %id)
BQ709551 Spleen .a 379 to 1009 17 to 654       638/858
(74 %)
23 diff
(97.4 %id)
TI_154195041   .a 379 to 1268 51 to 933       883/1035
(85 %)
24 diff
(97.7 %id)
DA495390 brain .a 380 to 897 2 to 519   capped   518/518
(100 %)
1 diff
(99.9 %id)
DA655203   .a 380 to 961 2 to 584   capped   583/583
(100 %)
3 diff
(99.5 %id)
AU127652   .a 380 to 1217 2 to 848   capped   847/847
(100 %)
28 diff
(96.7 %id)
DA870063 Prostate .a 380 to 912 2 to 534   capped   533/533
(100 %)
2 diff
(99.7 %id)
DA497784 brain .a 381 to 947 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA693483   .a 381 to 953 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA717067   .a 382 to 933 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB046559 testis .a 382 to 933 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB204312 trachea .a 382 to 944 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB254485 uterus .a 382 to 894 2 to 515   capped   514/514
(100 %)
1 diff
(99.9 %id)
DA514682 brain .a 383 to 939 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA616208   .a 383 to 852 2 to 471   capped   470/470
(100 %)
1 diff
(99.8 %id)
AU127755   .a 383 to 1169 2 to 796   capped   795/836
(95 %)
22 diff
(97.4 %id)
AU128124   .a 383 to 856 2 to 476   capped   475/514
(92 %)
9 diff
(98.3 %id)
DA866143 Prostate .a 383 to 923 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA867960 Prostate .a 383 to 886 2 to 506   capped   505/505
(100 %)
2 diff
(99.7 %id)
DA961098 Spleen .a 383 to 933 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
BE799817 lung, small cell carcinoma .a 384 to 1246 8 to 907       652/1037
(62 %)
38 diff
(96.4 %id)
BX336656 Placenta Cot 25-normalized .a 387 to 724 12 to 348       337/348
(96 %)
16 diff
(95.5 %id)
AU132375   .a 389 to 1187 2 to 805   capped   804/806
(99 %)
7 diff
(99.2 %id)
BC002445 Skin, melanotic melanoma. .a 392 to 2820 1 to 2429 S113L V368I M647V available from MGC, AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 2429/2429
(100 %)
3 diff
(99.9 %id)
BC005172 Uterus, endometrium adenocarcinoma .a 392 to 2820 1 to 2429   available from MGC, AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 2429/2429
(100 %)
3 diff
(99.9 %id)
BE409661 choriocarcinoma, placenta .a 393 to 1067 1 to 672       672/673
(99 %)
15 diff
(97.8 %id)
BQ887542 carcinoma, cell line, Prostate .a 393 to 1278 1 to 896       896/914
(98 %)
24 diff
(97.4 %id)
CO248052 Chondrosarcoma Lung Metastasis cell lines, lung .a 394 to 1118 1 to 720       720/812
(88 %)
19 diff
(97.7 %id)
BF979381 testis .a 396 to 993 7 to 602       596/602
(99 %)
9 diff
(98.6 %id)
AK312687   .a 397 to 2492 1 to 2096 exact     2096/2096
(100 %)
1 diff
(100.0 %id)
DA678509   .a 397 to 948 2 to 553   capped   552/553
(99 %)
1 diff
(99.9 %id)
DA835853 placenta .a 397 to 862 2 to 468   capped   467/467
(100 %)
2 diff
(99.6 %id)
DA931851 Spleen .a 397 to 897 2 to 502   capped   501/501
(100 %)
0 diff
(100 %id)
DB046877 testis .a 397 to 953 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BE735221 choriocarcinoma, placenta .a 398 to 1244 1 to 857       857/860
(99 %)
30 diff
(96.6 %id)
BP276479 Kidney .a 398 to 962 1 to 565       565/565
(100 %)
1 diff
(99.9 %id)
DA632408 Kidney .a 398 to 956 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA711416   .a 398 to 968 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB031369 testis .a 398 to 1004 2 to 608   capped   607/607
(100 %)
1 diff
(99.9 %id)
DA025407   .a 399 to 972 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA389612 thalamus .a 399 to 968 2 to 571   capped   570/571
(99 %)
1 diff
(99.9 %id)
BP243715 Liver .a 399 to 969 1 to 571       571/571
(100 %)
1 diff
(99.9 %id)
DA625278 Kidney .a 399 to 945 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA872425 Prostate .a 399 to 753 2 to 356   capped   355/355
(100 %)
0 diff
(100 %id)
DA964388 stomach .a 399 to 961 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DB027854 testis .a 399 to 712 2 to 315   capped   314/314
(100 %)
1 diff
(99.7 %id)
DB119614 thymus .a 399 to 936 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DA039033 bladder .a 400 to 951 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA080079 cerebellum .a 400 to 894 2 to 497   capped   496/496
(100 %)
3 diff
(99.4 %id)
DA151977 amygdala .a 400 to 985 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA586815 lung .a 400 to 937 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
BP275283 Kidney .a 400 to 978 1 to 580       580/580
(100 %)
1 diff
(99.9 %id)
DA625882 Kidney .a 400 to 957 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
AU121876 mammary gland .a 400 to 1259 2 to 862   capped   861/862
(99 %)
11 diff
(98.8 %id)
DA648580   .a 400 to 938 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DA654561   .a 400 to 968 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA655133   .a 400 to 962 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA692494   .a 400 to 948 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DA702903   .a 400 to 961 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA703478   .a 400 to 881 2 to 484   capped   483/483
(100 %)
1 diff
(99.8 %id)
DA708240   .a 400 to 894 2 to 496   capped   495/495
(100 %)
1 diff
(99.8 %id)
AU137702 placenta .a 400 to 1168 2 to 768   capped   767/769
(99 %)
8 diff
(99.0 %id)
DA884476   .a 400 to 960 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA922986 small intestine .a 400 to 978 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA960312 Spleen .a 400 to 980 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA995042 synovial membrane tissue from rheumatioidarthritis .a 400 to 944 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DB000372 breast, tumor tissue .a 400 to 897 2 to 499   capped   498/498
(100 %)
0 diff
(100 %id)
AU077344   .a 400 to 565 1 to 165       165/165
(100 %)
3 diff
(98.2 %id)
DA450081 tongue, tumor tissue .a 401 to 963 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA718281   .a 401 to 915 2 to 517   capped   516/516
(100 %)
2 diff
(99.7 %id)
DA818812   .a 401 to 954 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA820266 pericardium .a 401 to 711 2 to 312   capped   311/311
(100 %)
0 diff
(100 %id)
DB182199 liver, tumor tissue .a 401 to 971 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
BQ223733 embryonal carcinoma, cell line, testis .a 402 to 1177 1 to 786       786/870
(90 %)
14 diff
(98.4 %id)
BU540531 large cell carcinoma, lung .a 402 to 1273 1 to 884       884/916
(96 %)
19 diff
(98.0 %id)
DA934931 Spleen .a 402 to 985 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
BF340187 brain, glioblastoma with EGFR amplification .a 404 to 1175 12 to 771       760/944
(80 %)
28 diff
(97.1 %id)
BI765567 pooled colon, kidney, stomach .a 406 to 1015 26 to 662       618/662
(93 %)
30 diff
(95.5 %id)
TI_57147665   .a 406 to 1015 26 to 662       618/662
(93 %)
30 diff
(95.5 %id)
BM742689 Ascites, stomach .a 406 to 1038 1 to 634       634/634
(100 %)
5 diff
(99.3 %id)
BM765154 Ascites, stomach .a 406 to 980 1 to 575       575/575
(100 %)
0 diff
(100 %id)
DA027611   .a 410 to 968 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
BX337849 Placenta Cot 25-normalized .a 410 to 1178 17 to 783       766/783
(97 %)
11 diff
(98.6 %id)
BX406445 fetal liver, Liver .a 410 to 1325 1 to 911       911/911
(100 %)
33 diff
(96.4 %id)
BE409380 choriocarcinoma, placenta .a 410 to 1110 1 to 695       695/709
(98 %)
23 diff
(96.8 %id)
DA633851 Kidney .a 410 to 986 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
TI_154197693   .a 410 to 1400 52 to 1028       977/990
(98 %)
40 diff
(96.0 %id)
TI_154197707   .a 410 to 1198 66 to 854       789/997
(79 %)
54 diff
(94.6 %id)
BE275874 melanotic melanoma, skin .a 411 to 1067 1 to 659       659/698
(94 %)
14 diff
(98.0 %id)
BM457066 embryonal carcinoma, cell line, testis .a 411 to 1242 1 to 841       841/905
(92 %)
22 diff
(97.6 %id)
CN291077 embryonic stem cells, cell lines H1, H7, andH9 .a 412 to 805 1 to 394       394/394
(100 %)
0 diff
(100 %id)
BQ890386 eye, normal pigmented retinal epithelium .a 412 to 1298 1 to 899       899/904
(99 %)
23 diff
(97.5 %id)
BE387787 endometrium, adenocarcinoma cell line, uterus .a 413 to 1061 8 to 666       659/717
(91 %)
24 diff
(96.7 %id)
M58581 Liver .a 415 to 2669 1 to 2254 exact     2254/2255
(99 %)
2 diff
(100.0 %id)
AA179662 brain, neuroepithelial cells .a 416 to 760 1 to 352       352/369
(95 %)
22 diff
(94.1 %id)
TI_154196061   .a 416 to 1133 15 to 734       720/1036
(69 %)
50 diff
(95.2 %id)
TI_154196075   .a 416 to 1312 29 to 914       886/1044
(84 %)
28 diff
(97.4 %id)
CR598552 B cells (Ramos cell line) Cot 25-normalized .a 417 to 3057 1 to 2641 exact tiling clone,   2641/2641
(100 %)
0 diff
(100 %id)
BX363920   .a 417 to 1375 1 to 959       959/959
(100 %)
5 diff
(99.5 %id)
BX386799   .a 417 to 1396 1 to 977       977/977
(100 %)
4 diff
(99.6 %id)
DA481636   .a 417 to 984 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DN992040 brain, whole brain .a 417 to 1004 9 to 596       588/596
(98 %)
6 diff
(99.0 %id)
BU552787 ovary, teratocarcinoma, cell line .a 418 to 1268 1 to 861       861/901
(95 %)
27 diff
(97.1 %id)
BU553443 ovary, teratocarcinoma, cell line .a 418 to 1209 1 to 799       799/907
(88 %)
7 diff
(99.3 %id)
BU931477 ovary, teratocarcinoma, cell line .a 418 to 1294 1 to 881       881/882
(99 %)
17 diff
(98.1 %id)
DA467348 cord Blood .a 419 to 761 2 to 344   capped   343/343
(100 %)
0 diff
(100 %id)
DA565989 heart .a 419 to 974 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA621970 Kidney .a 419 to 957 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DB002298 breast, tumor tissue .a 419 to 954 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DA836098 placenta .a 422 to 973 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA047752   .a 424 to 809 2 to 387   capped   386/386
(100 %)
0 diff
(100 %id)
DA050796   .a 424 to 985 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA476612   .a 424 to 987 2 to 565   capped   564/565
(99 %)
1 diff
(99.9 %id)
BE410986 choriocarcinoma, placenta .a 424 to 856 69 to 501       433/504
(85 %)
11 diff
(97.9 %id)
DA666154   .a 424 to 971 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DA704847   .a 424 to 957 2 to 535   capped   534/534
(100 %)
4 diff
(99.3 %id)
DA719384   .a 424 to 990 2 to 570   capped   569/569
(100 %)
3 diff
(99.5 %id)
AU139760 placenta .a 424 to 1203 2 to 788   capped   787/891
(88 %)
14 diff
(98.5 %id)
DA911696   .a 424 to 985 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA921770 small intestine .a 424 to 911 2 to 489   capped   488/488
(100 %)
1 diff
(99.8 %id)
BE731353 choriocarcinoma, placenta .a 427 to 1155 1 to 733       733/916
(80 %)
21 diff
(97.8 %id)
BG256940 embryonal carcinoma, cell line, testis .a 432 to 1261 1 to 827       827/982
(84 %)
41 diff
(95.9 %id)
DA003908   .a 454 to 1005 2 to 554   capped   553/553
(100 %)
3 diff
(99.5 %id)
BE889932 leiomyosarcoma, uterus .a 455 to 1218 1 to 759       759/860
(88 %)
24 diff
(97.3 %id)
DA921641 small intestine .a 459 to 1034 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA712110   .a 461 to 993 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
BM551811 astrocytoma grade IV, cell line, brain .a 469 to 1483 1 to 1034       1034/1103
(93 %)
35 diff
(96.9 %id)
BQ706157 Spleen .a 470 to 1366 13 to 921       909/940
(96 %)
44 diff
(95.4 %id)
AU139935 placenta .a 470 to 1056 2 to 589   capped   588/588
(100 %)
4 diff
(99.4 %id)
CN291080 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 472 to 840 1 to 369       369/369
(100 %)
0 diff
(100 %id)
DA820853 pericardium .a 489 to 899 2 to 412   capped   411/411
(100 %)
3 diff
(99.3 %id)
AL041337 testis .a 523 to 834 66 to 378       313/381
(82 %)
7 diff
(98.2 %id)
AL041298 testis .a 529 to 1259 1 to 731       731/731
(100 %)
3 diff
(99.6 %id)
CA395055 eye, RPE/choroid .a 630 to 911 1 to 282       282/282
(100 %)
7 diff
(97.6 %id)
CN291075 embryonic stem cells, DMSO-treated H9 cellline .a 649 to 1116 1 to 468       468/468
(100 %)
0 diff
(100 %id)
BE765274 nervous_tumor .a 703 to 940 238 to 1       238/240
(99 %)
4 diff
(98.4 %id)
BE093354 breast .a 708 to 1001 1 to 294       294/294
(100 %)
7 diff
(97.7 %id)
AK223052   .a 758 to 2820 1 to 2063   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 2063/2063
(100 %)
6 diff
(99.8 %id)
BP271577   .a 758 to 1387 1 to 630       630/630
(100 %)
5 diff
(99.3 %id)
BP346623 brain .a 762 to 1341 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DA310702 hippocampus .a 765 to 1340 2 to 577   capped   576/577
(99 %)
1 diff
(99.9 %id)
BF336195 colon .a 837 to 1100 270 to 6       265/270
(98 %)
0 diff
(100 %id)
BP315434 mammary gland .a 839 to 1420 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DB192156 ovary, tumor tissue .a 844 to 1375 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
BF027277 melanotic melanoma, skin .a 846 to 1688 10 to 877       868/966
(89 %)
6 diff
(99.4 %id)
BF026359 melanotic melanoma, skin .a 858 to 1563 1 to 705       705/705
(100 %)
3 diff
(99.6 %id)
BE762833 nervous_tumor .a 894 to 1141 1 to 246       246/246
(100 %)
1 diff
(99.6 %id)
BM818530 stomach .a 899 to 1231 1 to 333       333/333
(100 %)
1 diff
(99.7 %id)
BP268311 thyroid .a 906 to 1487 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
BP274748 Kidney .a 906 to 1487 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA638018 Liver .a 908 to 1248 2 to 342   capped   341/341
(100 %)
0 diff
(100 %id)
BM829569 Ascites, stomach .a 908 to 1547 1 to 640       640/640
(100 %)
0 diff
(100 %id)
AU136735 placenta .a 945 to 1724 2 to 785   capped   784/789
(99 %)
11 diff
(98.7 %id)
BE925038 amnion_normal .a 970 to 1202 1 to 233       233/249
(93 %)
11 diff
(95.6 %id)
BQ218031 epithelioid carcinoma, Pancreas .a 1008 to 1837 1 to 844       844/893
(94 %)
22 diff
(97.6 %id)
DA252345 caudate nucleus .a 1042 to 1635 2 to 595   capped   594/594
(100 %)
3 diff
(99.5 %id)
BE898681 adenocarcinoma cell line, ovary .a 1088 to 1800 1 to 704       704/874
(80 %)
11 diff
(98.8 %id)
BE899289 adenocarcinoma cell line, ovary .a 1089 to 1791 1 to 701       701/701
(100 %)
5 diff
(99.3 %id)
BQ899331 sciatic nerve .a 1092 to 1946 1 to 870       870/897
(96 %)
30 diff
(96.7 %id)
BI258682 cervical carcinoma cell line, cervix .a 1105 to 1856 1 to 752       752/1289
(58 %)
10 diff
(99.3 %id)
BU167554 melanotic melanoma, skin .a 1121 to 1929 1 to 812       812/812
(100 %)
4 diff
(99.6 %id)
BP236171 coronary artery .a 1131 to 1726 1 to 595       595/595
(100 %)
4 diff
(99.4 %id)
DB291852 uterus .a 1162 to 1735 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
BP297732   .a 1188 to 1758 1 to 571       571/571
(100 %)
3 diff
(99.5 %id)
BP326320 prostata .a 1201 to 1782 1 to 583       583/583
(100 %)
4 diff
(99.4 %id)
BX390948   .a 1226 to 2127 1 to 900       900/901
(99 %)
15 diff
(98.4 %id)
BI759433 pooled colon, kidney, stomach .a 1234 to 1919 1 to 686       686/686
(100 %)
0 diff
(100 %id)
TI_57149435   .a 1234 to 1919 70 to 755       686/755
(90 %)
6 diff
(99.3 %id)
CN291079 embryonic stem cells, cell lines H1, H7, andH9 .a 1243 to 1858 49 to 664       616/664
(92 %)
6 diff
(99.1 %id)
BM043019 carcinoma, cell line, Prostate .a 1243 to 1966 1 to 726       726/856
(84 %)
20 diff
(97.7 %id)
BP302300   .a 1255 to 1816 1 to 562       562/562
(100 %)
4 diff
(99.3 %id)
BX372303   .a 1276 to 2160 881 to 1       881/884
(99 %)
13 diff
(98.6 %id)
CN291076 embryonic stem cells, cell lines H1, H7, andH9 .a 1290 to 1902 13 to 625       613/625
(98 %)
6 diff
(99.1 %id)
BG485018 lung .a 1305 to 2098 1 to 797       797/797
(100 %)
44 diff
(94.5 %id)
BI335912 skin .a 1339 to 1793 1 to 455       455/455
(100 %)
1 diff
(99.8 %id)
BE792176 lung, small cell carcinoma .a 1372 to 2053 41 to 721       681/721
(94 %)
6 diff
(99.2 %id)
CB144750 Liver .a 1399 to 1658 1 to 260       260/260
(100 %)
3 diff
(98.9 %id)
BG429450 Kidney .a 1411 to 2051 1 to 647       647/647
(100 %)
14 diff
(97.9 %id)
BM850833 stomach .a 1440 to 1650 1 to 211       211/211
(100 %)
7 diff
(96.7 %id)
CD698715 normal nasopharynx .a 1459 to 1838 26 to 405       380/405
(93 %)
6 diff
(98.6 %id)
TI_154066772   .a 1489 to 2010 579 to 58       522/579
(90 %)
0 diff
(100 %id)
BE747133 adenocarcinoma cell line, ovary .a 1575 to 2054 1 to 480       480/480
(100 %)
1 diff
(99.8 %id)
BG830129 epithelioid carcinoma cell line, Pancreas .a 1636 to 2074 1 to 439       439/439
(100 %)
0 diff
(100 %id)
BE542163 cervix .a 1759 to 2433 1 to 684       684/871
(78 %)
18 diff
(98.0 %id)
BQ640769 eye, retina .a 1764 to 2278 1 to 515       515/517
(99 %)
9 diff
(98.3 %id)
BM043895 carcinoma, cell line, Prostate .a 1873 to 2074 1 to 202       202/202
(100 %)
1 diff
(99.6 %id)
BI868420 adenocarcinoma, cell line, Liver .a 1891 to 2576 1 to 689       689/689
(100 %)
3 diff
(99.6 %id)
TI_57228080   .a 1891 to 2576 55 to 743       689/689
(100 %)
3 diff
(99.6 %id)
BF666792 brain, primitive neuroectoderm .a 1954 to 2673 1 to 708       708/886
(79 %)
37 diff
(95.9 %id)
BF667157 brain, primitive neuroectoderm .a 1954 to 2674 1 to 706       706/858
(82 %)
22 diff
(97.5 %id)
BF700908 brain, primitive neuroectoderm .a 1954 to 2654 1 to 692       692/773
(89 %)
30 diff
(96.2 %id)
BU538700 adenocarcinoma, cell line, breast .a 1990 to 2828 862 to 18   AAA Submitted on the opposite strand 845/845
(100 %)
8 diff
(99.1 %id)
BX363919   .a 2032 to 3050 1021 to 1       1021/1021
(100 %)
4 diff
(99.7 %id)
BX336655 Placenta Cot 25-normalized .a 2035 to 3036 1001 to 1       1001/1124
(89 %)
26 diff
(97.7 %id)
BP318086 pericardium .a 2045 to 2617 1 to 574       574/583
(98 %)
4 diff
(99.4 %id)
BX386798   .a 2077 to 3057 983 to 1       983/983
(100 %)
5 diff
(99.5 %id)
DB377080 placenta .a 2215 to 2817 608 to 12       597/609
(98 %)
0 diff
(100 %id)
BX398043 Placenta Cot 25-normalized .a 2252 to 3058 805 to 1       805/805
(100 %)
13 diff
(98.4 %id)
AU153811   .a 2272 to 2828 554 to 1       554/555
(99 %)
15 diff
(97.3 %id)
DB354185   .a 2288 to 2827 547 to 3       545/558
(97 %)
0 diff
(100 %id)
DB364593   .a 2362 to 2820 463 to 1       463/465
(99 %)
27 diff
(94.2 %id)
DB375545 placenta .a 2373 to 2817 447 to 4       444/447
(99 %)
0 diff
(100 %id)
AA179663 brain, neuroepithelial cells .a 2404 to 2826 425 to 3       423/425
(99 %)
0 diff
(100 %id)
AU147607 mammary gland .a 2521 to 3092 577 to 1       577/578
(99 %)
15 diff
(97.5 %id)
DB380532 placenta .a 2522 to 3092 575 to 1   tiling clone,   575/577
(99 %)
36 diff
(93.8 %id)
AU158163 placenta .a 2540 to 3092 554 to 1       554/554
(100 %)
16 diff
(97.2 %id)
AU150437   .a 2595 to 3092 494 to 1       494/540
(91 %)
5 diff
(99.1 %id)
D56299   .b 1 to 227 1 to 226   tiling clone,   226/226
(100 %)
1 diff
(99.6 %id)
BX445772 T cells (Jurkat cell line) .b 43 to 1091 1046 to 4       1043/1081
(96 %)
17 diff
(98.5 %id)
AV686683 hepatocellular carcinoma .b 219 to 581 1 to 354   tiling clone,   354/356
(99 %)
7 diff
(98.1 %id)
BX436051 T cells (Jurkat cell line) .b 239 to 1129 895 to 1       895/896
(99 %)
25 diff
(97.3 %id)
CA423665 cell lines, Chondrosarcoma .b 281 to 879 617 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 599/599
(100 %)
2 diff
(99.7 %id)
AA641442 epithelium (cell line), Prostate .b 289 to 595 308 to 1       308/308
(100 %)
7 diff
(97.8 %id)
AW003595 brain, four pooled pituitary adenomas .b 292 to 879 586 to 1       586/586
(100 %)
9 diff
(98.5 %id)
CB164643 Liver .b 294 to 844 1 to 551       551/551
(100 %)
1 diff
(99.9 %id)
AW003612 brain, four pooled pituitary adenomas .b 295 to 879 583 to 1       583/583
(100 %)
2 diff
(99.7 %id)
BF939459 brain, glioblastoma (pooled) .b 298 to 871 574 to 1       574/574
(100 %)
0 diff
(100 %id)
BF239331 bone marrow, from chronic myelogenous leukemia .b 304 to 890 1 to 586       586/746
(78 %)
45 diff
(94.0 %id)
AW007247 adenocarcinoma, Pancreas .b 305 to 879 574 to 1       574/574
(100 %)
4 diff
(99.4 %id)
TI_154135028   .b 305 to 1143 911 to 77   tiling clone, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 835/926
(90 %)
14 diff
(98.5 %id)
AA758131 pineal gland .b 387 to 876 490 to 1       490/490
(100 %)
0 diff
(100 %id)
BF727372 eye, lens .b 405 to 848 1 to 444       444/444
(100 %)
4 diff
(99.1 %id)
AW194077 adenocarcinoma, Pancreas .b 412 to 879 466 to 1       466/466
(100 %)
4 diff
(99.2 %id)
AA531596 invasive prostate tumor, Prostate .b 473 to 851 68 to 442       375/444
(84 %)
19 diff
(95.8 %id)
BU629852 cell lines, Chondrosarcoma .b 486 to 1143 676 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 658/658
(100 %)
1 diff
(99.9 %id)
BJ994295 hepatoblastoma .b 488 to 859 373 to 1       373/373
(100 %)
13 diff
(96.6 %id)
BE391171 endometrium, adenocarcinoma cell line, uterus .b 525 to 1137 1 to 611       611/614
(99 %)
8 diff
(98.7 %id)
AI872000 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .b 526 to 879 354 to 1       354/354
(100 %)
0 diff
(100 %id)
BQ278546 mixed (pool of 40 RNAs) .b 530 to 1143 1 to 621       621/974
(63 %)
19 diff
(98.1 %id)
AI365625 brain, oligodendroglioma .b 597 to 1070 474 to 1       474/477
(99 %)
2 diff
(99.6 %id)
BU588347 mixed (pool of 40 RNAs) .b 739 to 1150 1 to 413       413/1053
(39 %)
12 diff
(98.9 %id)
AI637641 pooled germ cell tumors .b 823 to 1143 322 to 1       322/322
(100 %)
2 diff
(99.4 %id)
W58236.
matches multiple genes
heart .b 839 to 1143 305 to 1     also hits gene smerbla 305/390
(78 %)
2 diff
(99.5 %id)
AW148613 brain, tumor, 5 pooled (see description) .b 861 to 1143 315 to 32   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 284/284
(100 %)
16 diff
(94.4 %id)
BM012384 brain, neuroblastoma, cell line .b 864 to 1143 1 to 284   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 284/284
(100 %)
5 diff
(98.3 %id)
AV757087 bone marrow .b 872 to 1143 90 to 361   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 272/288
(94 %)
0 diff
(100 %id)
AI654698 pooled germ cell tumors .b 905 to 1133 240 to 12       229/240
(95 %)
0 diff
(100 %id)
AW207663   .b 919 to 1143 243 to 18   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 226/226
(100 %)
1 diff
(99.6 %id)
BG169856 hypernephroma, cell line, Kidney .b 940 to 1141 1 to 226   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 226/226
(100 %)
23 diff
(89.9 %id)
CA337107 posterior rhombomeres 5-8 (4 pooled) .b 966 to 1143 1 to 178   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 178/178
(100 %)
0 diff
(100 %id)
D12096 Liver .b 1022 to 1138 1 to 118       118/123
(95 %)
2 diff
(98.4 %id)
AA747628 Ewing's sarcoma .b 1047 to 1402 9 to 364       356/364
(97 %)
6 diff
(98.4 %id)
AI494182 Kidney .b 1048 to 1440 1 to 393   tiling clone,   393/394
(99 %)
1 diff
(99.8 %id)
DB556111.
matches multiple genes
hypothalamus .b 1050 to 1500 453 to 1   tiling clone, also hits gene MAGOHandC1orf123 453/453
(100 %)
10 diff
(97.8 %id)
FN162522 breast carcinoma .b 1052 to 1138 1 to 88       88/99
(88 %)
4 diff
(96.0 %id)
BE440189 Trabecular meshwork .b 1068 to 1440 1 to 374       374/374
(100 %)
5 diff
(98.7 %id)
D19885   .b 1082 to 1193 112 to 1       112/112
(100 %)
0 diff
(100 %id)
DB534353.
matches multiple genes
hippocampus .b 1085 to 1489 405 to 1   tiling clone, also hits gene MAGOHandC1orf123 405/405
(100 %)
6 diff
(98.6 %id)
BF754960 colon .b 1111 to 1471 1 to 363       363/375
(96 %)
10 diff
(97.4 %id)
FN109573 breast carcinoma .b 1284 to 1344 1 to 61       61/62
(98 %)
1 diff
(98.4 %id)
FN092933 breast carcinoma .b 1396 to 1469 1 to 74       74/75
(98 %)
1 diff
(98.7 %id)
CB987945 Human Placenta, placenta .c 1 to 732 20 to 753 V2T L3R tiling clone,   734/813
(90 %)
17 diff
(98.0 %id)
CD109535 Human Placenta, placenta .c 1 to 740 20 to 764 V2T L3R F13Y F114I tiling clone,   745/768
(97 %)
13 diff
(98.4 %id)
CB960675 Human Placenta, placenta .c 1 to 655 20 to 679 V2T L3R tiling clone,   660/818
(80 %)
14 diff
(98.3 %id)
BG938476 Bone, Hip .d 1 to 584 1 to 584 exact tiling clone,   584/584
(100 %)
4 diff
(99.4 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC