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Gene CPNE7TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
95 supporting clones for gene CPNE7 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AJ133798   .a 1 to 2655 1 to 2654 R25D L26S A27R G28A S29A ... tiling clone,   2654/2654
(100 %)
1 diff
(100.0 %id)
NM_014427.4   .a 1 to 2656 1 to 2656 exact RefSeq, AAA   2656/2656
(100 %)
0 diff
(100 %id)
AL540234 brain, fetal brain .b 1 to 892 1 to 895       895/1051
(85 %)
27 diff
(97.5 %id)
AL539371 brain, fetal brain .b 1 to 992 1 to 991   tiling clone,   991/991
(100 %)
3 diff
(99.7 %id)
NM_153636.2   .b 2 to 2432 1 to 2431 exact RefSeq, AAA   2431/2431
(100 %)
0 diff
(100 %id)
BX333802 Neuroblastoma Cot 50-normalized .b 5 to 769 1 to 764       764/764
(100 %)
12 diff
(98.5 %id)
BX441703 brain, fetal brain .b 21 to 811 1 to 792       792/885
(89 %)
11 diff
(98.8 %id)
BX444965 brain, fetal brain .b 21 to 998 1 to 969       969/969
(100 %)
11 diff
(98.9 %id)
BI913661 brain .b 21 to 815 1 to 809       809/870
(92 %)
29 diff
(96.7 %id)
TI_57241424   .b 21 to 871 30 to 898       867/899
(96 %)
26 diff
(97.2 %id)
BC064577 Brain, hippocampus .b 25 to 2432 1 to 2408   tiling clone, available from MGC, AAA   2408/2408
(100 %)
2 diff
(100.0 %id)
BM544634 brain, hippocampus .b 25 to 725 1 to 708       708/1199
(59 %)
14 diff
(98.9 %id)
TI_1948138542   .b 130 to 637 126 to 640       515/1425
(36 %)
20 diff
(98.6 %id)
TI_1948138543   .b 130 to 919 124 to 920       797/1450
(54 %)
23 diff
(98.5 %id)
TI_1948138847   .b 130 to 708 125 to 710       586/1401
(41 %)
23 diff
(98.4 %id)
TI_1948138848   .b 130 to 815 129 to 815       687/1387
(49 %)
15 diff
(99.0 %id)
TI_1948139157   .b 130 to 812 127 to 811       685/1408
(48 %)
17 diff
(98.8 %id)
CV029622 mixed .b 132 to 666 1 to 534       534/534
(100 %)
11 diff
(98.0 %id)
BX420737 brain, fetal brain .b 254 to 1231 1 to 973       973/984
(98 %)
17 diff
(98.3 %id)
CF132452 Chondrosarcoma Lung Metastasis cell lines, lung .b 462 to 1166 10 to 716       707/716
(98 %)
7 diff
(99.1 %id)
TI_159676710   .b 462 to 1248 59 to 843       785/1041
(75 %)
19 diff
(98.2 %id)
CF140906 CNCAP(3)T-225 cell line, Prostate .b 567 to 863 1 to 297       297/297
(100 %)
4 diff
(98.7 %id)
TI_154171513   .b 573 to 1247 80 to 754       675/941
(71 %)
20 diff
(97.9 %id)
BF765944 colon_est .b 589 to 789 1 to 200       200/212
(94 %)
7 diff
(96.7 %id)
BG338687 leiomyosarcoma cell line, uterus .b 660 to 1436 1 to 773       773/1077
(71 %)
34 diff
(96.9 %id)
BF799048 colon_ins .b 693 to 1038 42 to 398       355/398
(89 %)
30 diff
(92.5 %id)
BX431644 brain, fetal brain .b 722 to 1639 1 to 915       915/915
(100 %)
15 diff
(98.4 %id)
TI_57199280   .b 781 to 1306 59 to 583       525/583
(90 %)
6 diff
(99.0 %id)
BI821589 pooled brain, lung, testis .b 790 to 1035 1 to 245       245/245
(100 %)
1 diff
(99.6 %id)
BE797059 lung, small cell carcinoma .b 802 to 1534 1 to 728       728/729
(99 %)
7 diff
(99.1 %id)
BM824628 Ascites, stomach .b 874 to 1386 1 to 513       513/513
(100 %)
0 diff
(100 %id)
TI_57220914   .b 959 to 1728 58 to 840       783/840
(93 %)
37 diff
(95.6 %id)
BI758319 brain .b 968 to 1035 1 to 69       69/69
(100 %)
1 diff
(98.6 %id)
BM823274 Ascites, stomach .b 1038 to 1572 1 to 535       535/535
(100 %)
0 diff
(100 %id)
TI_1948138544   .b 1056 to 1807 877 to 123       755/1279
(59 %)
10 diff
(99.3 %id)
TI_1948139158   .b 1091 to 1807 869 to 141       729/1316
(55 %)
26 diff
(98.1 %id)
TI_1948138253   .b 1104 to 1807 830 to 127       704/1440
(48 %)
11 diff
(99.3 %id)
TI_1948138252   .b 1184 to 1807 744 to 121       624/1272
(49 %)
12 diff
(99.1 %id)
TI_1948138545   .b 1190 to 1807 755 to 140       616/1377
(44 %)
13 diff
(99.1 %id)
TI_1948138849   .b 1190 to 1807 731 to 111       621/1313
(47 %)
7 diff
(99.5 %id)
TI_57243203   .b 1225 to 1983 24 to 779       756/780
(96 %)
16 diff
(98.0 %id)
BX281473 brain .b 1232 to 1753 1 to 522       522/522
(100 %)
1 diff
(99.9 %id)
BI918287 brain .b 1232 to 1983 1 to 749       749/750
(99 %)
10 diff
(98.7 %id)
TI_1948138850   .b 1246 to 1807 706 to 141       566/1383
(40 %)
8 diff
(99.5 %id)
EH314047   .b 1254 to 1320 1 to 67       67/67
(100 %)
0 diff
(100 %id)
AL567811 brain, fetal brain .b 1300 to 2373 1064 to 1       1064/1064
(100 %)
16 diff
(98.5 %id)
AL540233 brain, fetal brain .b 1314 to 2354 1041 to 1       1040/1053
(98 %)
54 diff
(94.9 %id)
R19516 whole brain .b 1393 to 1748 1 to 355       355/355
(100 %)
9 diff
(97.5 %id)
BX444964 brain, fetal brain .b 1443 to 2397 944 to 1       944/1028
(91 %)
16 diff
(98.5 %id)
TI_57242719   .b 1474 to 2292 24 to 846   tiling clone,   823/846
(97 %)
20 diff
(97.7 %id)
BI914091 brain .b 1481 to 2292 1 to 816       816/816
(100 %)
14 diff
(98.3 %id)
AA071126   .b 1586 to 1995 1 to 416     Submitted on the opposite strand 416/417
(99 %)
10 diff
(97.7 %id)
BX333801 Neuroblastoma Cot 50-normalized .b 1626 to 2395 770 to 1       770/770
(100 %)
12 diff
(98.5 %id)
BF963679 nervous_normal .b 1633 to 1999 371 to 5       367/371
(98 %)
0 diff
(100 %id)
BM797090 Ascites, stomach .c 1 to 375 1 to 373   tiling clone,   373/373
(100 %)
6 diff
(98.4 %id)
BM765087 Ascites, stomach .c 359 to 846 1 to 489   tiling clone,   489/489
(100 %)
3 diff
(99.4 %id)
BM824888 Ascites, stomach .d 1 to 561 1 to 558 Y2V K3I N4R S5T G6R ... tiling clone,   558/558
(100 %)
6 diff
(99.0 %id)
AA704052   .e-u 1 to 512 1 to 511   tiling clone,   511/511
(100 %)
5 diff
(99.1 %id)
BG977547 colon_ins .e-u 263 to 520 261 to 2   tiling clone,   260/261
(99 %)
0 diff
(100 %id)
BG252632 adenocarcinoma, cell line, Liver .f 1 to 711 6 to 727 L6R W7L L9F E10G P11A ... tiling clone,   727/803
(90 %)
49 diff
(93.9 %id)
AK123526 thalamus .g-u 1 to 2124 2124 to 1 C114R tiling clone, available from FLJ, Submitted on the opposite strand 2124/2124
(100 %)
9 diff
(99.6 %id)
DB311459 thalamus .g-u 1 to 518 1 to 518   tiling clone, Submitted on the opposite strand 518/518
(100 %)
5 diff
(99.1 %id)
BJ990984 hepatoblastoma .g-u 13 to 548 1 to 536   tiling clone, Submitted on the opposite strand 536/536
(100 %)
3 diff
(99.5 %id)
CN411993 embryonic stem cells, cell lines H1, H7, andH9 .g-u 799 to 1433 1 to 633   tiling clone,   633/633
(100 %)
3 diff
(99.6 %id)
BQ320595 colon .g-u 837 to 1135 22 to 315       294/315
(93 %)
6 diff
(98.1 %id)
AW814019 stomach .g-u 1039 to 1484 476 to 31       446/476
(93 %)
0 diff
(100 %id)
BF755834 colon .g-u 1374 to 1611 196 to 432       237/433
(54 %)
4 diff
(99.1 %id)
BJ990983 hepatoblastoma .g-u 1539 to 2125 587 to 1     Submitted on the opposite strand 587/587
(100 %)
2 diff
(99.7 %id)
BX101546 placenta .g-u 1833 to 2257 1 to 425       425/425
(100 %)
3 diff
(99.3 %id)
BM793333 Ascites, stomach .g-u 1866 to 2461 1 to 596       596/596
(100 %)
5 diff
(99.2 %id)
BQ014714 Chondrosarcoma, Left Pubic Bone .g-u 1888 to 2574 705 to 19   tiling clone, AAA   687/687
(100 %)
0 diff
(100 %id)
BQ009550 Chondrosarcoma, Left Pubic Bone .g-u 1902 to 2566 683 to 19   AAA   665/665
(100 %)
0 diff
(100 %id)
CA431690 Bone, Subchondral Bone .g-u 1940 to 2568 646 to 19   AAA   628/628
(100 %)
1 diff
(99.9 %id)
BM824893 Ascites, stomach .g-u 1942 to 2368 1 to 427       427/427
(100 %)
2 diff
(99.6 %id)
BX413310 brain, fetal brain .g-u 2009 to 2571 563 to 1       563/764
(73 %)
15 diff
(98.1 %id)
BF876762 lung_tumor .g-u 2148 to 2469 330 to 9     Submitted on the opposite strand 322/357
(90 %)
0 diff
(100 %id)
BF877289 lung_tumor .g-u 2148 to 2469 330 to 9     Submitted on the opposite strand 322/357
(90 %)
0 diff
(100 %id)
AI278055 placenta .g-u 2175 to 2568 415 to 22   AAA   394/394
(100 %)
3 diff
(99.3 %id)
AA071125   .g-u 2182 to 2575 402 to 3   tiling clone, Submitted on the opposite strand 400/403
(99 %)
0 diff
(100 %id)
BM794458 Ascites, stomach .g-u 2190 to 2574 1 to 385   AAA   385/385
(100 %)
0 diff
(100 %id)
BM720039 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .g-u 2206 to 2574 1 to 369   AAA   369/369
(100 %)
0 diff
(100 %id)
AI915130 colon, colon tumor, RER+ .g-u 2250 to 2575 329 to 3       327/329
(99 %)
0 diff
(100 %id)
BM472951 duodenal adenocarcinoma, cell line, small intestine .g-u 2261 to 2566 31 to 336   AAA   306/336
(91 %)
6 diff
(98.3 %id)
AI582322 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .g-u 2298 to 2565 286 to 9       278/286
(97 %)
0 diff
(100 %id)
AW070237 pooled .g-u 2306 to 2573 269 to 1       269/270
(99 %)
2 diff
(99.3 %id)
Z39757 brain, total brain .g-u 2356 to 2569 214 to 1       214/214
(100 %)
0 diff
(100 %id)
BM468923 duodenal adenocarcinoma, cell line, small intestine .h 1 to 566 1 to 567 exact tiling clone,   567/1127
(50 %)
12 diff
(99.0 %id)
BF803806 colon_ins .i 1 to 492 489 to 1 exact tiling clone, Submitted on the opposite strand 489/505
(96 %)
5 diff
(99.1 %id)
BM987502 mixed .j-u 1 to 362 380 to 19 exact tiling clone, AAA   362/362
(100 %)
0 diff
(100 %id)
BI911530 leukocyte .k 1 to 707 7 to 717 exact tiling clone,   711/937
(75 %)
30 diff
(96.8 %id)
TI_57232873   .k 1 to 707 7 to 717 exact AAA   711/924
(76 %)
30 diff
(96.8 %id)
BQ320600 colon .l 1 to 186 183 to 1   tiling clone,   183/193
(94 %)
6 diff
(96.9 %id)
BM797064 Ascites, stomach .l 74 to 267 1 to 194   tiling clone,   194/194
(100 %)
0 diff
(100 %id)
BM793103 Ascites, stomach .m 1 to 517 1 to 519 S28L A29C T30D R31P R32G ... tiling clone,   519/519
(100 %)
8 diff
(98.5 %id)
BQ320605 colon .n 1 to 208 212 to 8 Q31R R32T T33A A34Q Q35G ... tiling clone,   205/222
(92 %)
0 diff
(100 %id)
D80490 brain .o 1 to 247 1 to 243 I20X tiling clone,   243/252
(96 %)
6 diff
(97.7 %id)
BC035334 Brain, adult, 6 pooled whole brains Gene CPNE7, variant not shown       available from MGC, AAA Suspected internal deletion, this clone was ignored    
BI059835 uterus_tumor Gene CPNE7, variant not shown         This clone was ignored    
CX783666 human embryonic stem cells Gene CPNE7, variant not shown         This clone was ignored    
BQ082157 stomach Gene CPNE7, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f, .g-u, .h, .i, .j-u, .k, .l, .m, .n, .o Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI