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Gene CPNE4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
231 supporting clones for gene CPNE4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC330179 hippocampus CPNE4.a 1 to 582 1 to 582   tiling clone,   582/582
(100 %)
0 diff
(100 %id)
DC335213 hippocampus CPNE4.a 21 to 609 1 to 589       589/589
(100 %)
0 diff
(100 %id)
BQ373778 prostate_tumor CPNE4.a 33 to 197 173 to 11       163/173
(94 %)
0 diff
(100 %id)
DC320076 brain CPNE4.a 44 to 527 1 to 484       484/484
(100 %)
0 diff
(100 %id)
DC331417 hippocampus CPNE4.a 44 to 625 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DC316359 amygdala CPNE4.a 45 to 605 1 to 561       561/561
(100 %)
1 diff
(99.9 %id)
DC319651 brain CPNE4.a 45 to 629 1 to 586       586/586
(100 %)
1 diff
(99.9 %id)
DC320330 brain CPNE4.a 45 to 590 1 to 546       546/546
(100 %)
0 diff
(100 %id)
DC324034 brain CPNE4.a 45 to 634 1 to 590       590/590
(100 %)
1 diff
(99.9 %id)
DC330110 hippocampus CPNE4.a 45 to 629 1 to 585       585/585
(100 %)
1 diff
(99.9 %id)
BP308658 brain CPNE4.a 45 to 642 1 to 598       598/598
(100 %)
1 diff
(99.9 %id)
DC330752 hippocampus CPNE4.a 47 to 624 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
DC350717 brain CPNE4.a 51 to 612 1 to 562       562/562
(100 %)
0 diff
(100 %id)
DC314490 amygdala CPNE4.a 53 to 608 1 to 556       556/558
(99 %)
1 diff
(99.9 %id)
DC330136 hippocampus CPNE4.a 81 to 645 1 to 565       565/565
(100 %)
0 diff
(100 %id)
DC412584 kidney, tumor tissue CPNE4.a 84 to 635 1 to 552       552/552
(100 %)
0 diff
(100 %id)
AK295557 hippocampus CPNE4.a 86 to 2095 1 to 2011 Q280R tiling clone,   2011/2011
(100 %)
2 diff
(100.0 %id)
DC316802 amygdala CPNE4.a 86 to 630 1 to 545       545/545
(100 %)
0 diff
(100 %id)
DC331529 hippocampus CPNE4.a 86 to 658 1 to 573       573/573
(100 %)
0 diff
(100 %id)
CR593567 fetal brain CPNE4.a 1122 to 3553 1 to 2432   tiling clone,   2432/2432
(100 %)
0 diff
(100 %id)
Z42733 brain, total brain CPNE4.a 1182 to 1527 1 to 346       346/346
(100 %)
7 diff
(98.0 %id)
F06573 brain, total brain CPNE4.a 1182 to 1455 1 to 274       274/279
(98 %)
9 diff
(96.8 %id)
R12720 whole brain CPNE4.a 1183 to 1551 1 to 377       377/467
(80 %)
15 diff
(96.8 %id)
R19661 whole brain CPNE4.a 1183 to 1551 1 to 372       372/458
(81 %)
11 diff
(97.6 %id)
BQ270977 Pancreas, Purified pancreatic islet CPNE4.a 1832 to 2382 551 to 1       551/551
(100 %)
0 diff
(100 %id)
BX119591 whole brain CPNE4.a 1864 to 2402 552 to 14       539/552
(97 %)
0 diff
(100 %id)
F07198 brain, total brain CPNE4.a 1864 to 2127 1 to 264       264/264
(100 %)
1 diff
(99.7 %id)
Z44832 brain, total brain CPNE4.a 1864 to 2178 1 to 315       315/315
(100 %)
0 diff
(100 %id)
R20411 whole brain CPNE4.a 1865 to 2244 1 to 391       391/392
(99 %)
16 diff
(96.0 %id)
CK825465 Pancreas, Purified pancreatic islet CPNE4.a 1907 to 2383 507 to 31   AAA Submitted on the opposite strand 477/477
(100 %)
7 diff
(98.6 %id)
BX431600 brain, fetal brain CPNE4.a 1932 to 2800 1 to 873       873/955
(91 %)
47 diff
(95.1 %id)
AI094803 brain, glioblastoma (pooled) CPNE4.a 1934 to 2399 466 to 1       466/466
(100 %)
0 diff
(100 %id)
DA359910 subthalamic nucleus CPNE4.a 1941 to 2505 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
BX412977 brain, fetal brain CPNE4.a 2679 to 3553 881 to 1       881/886
(99 %)
18 diff
(98.0 %id)
BM927288 brain CPNE4.a 2820 to 3548 1 to 729       729/733
(99 %)
2 diff
(99.8 %id)
BQ342678 nervous_normal CPNE4.a 2955 to 3360 42 to 452       411/454
(90 %)
13 diff
(97.2 %id)
CV319348 nervous_normal CPNE4.a 3005 to 3360 15 to 375       361/397
(90 %)
10 diff
(97.5 %id)
AI703256 carcinoid, lung CPNE4.a 3006 to 3550 545 to 1       545/545
(100 %)
1 diff
(99.9 %id)
BE218903 carcinoid, lung CPNE4.a 3112 to 3550 439 to 1       439/439
(100 %)
1 diff
(99.8 %id)
R44447 whole brain CPNE4.a 3118 to 3558 452 to 3       450/453
(99 %)
22 diff
(95.2 %id)
BE348527 carcinoid, lung CPNE4.a 3211 to 3550 340 to 1       340/341
(99 %)
7 diff
(98.0 %id)
R39773 whole brain CPNE4.a 3213 to 3558 352 to 3       350/358
(97 %)
11 diff
(97.0 %id)
R40359 whole brain CPNE4.a 3231 to 3551 335 to 11   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 325/327
(99 %)
6 diff
(98.2 %id)
T23594   CPNE4.a 3260 to 3551 297 to 4       294/299
(98 %)
0 diff
(100 %id)
Z38889 brain, total brain CPNE4.a 3287 to 3551 265 to 1       265/265
(100 %)
0 diff
(100 %id)
F02842 brain, total brain CPNE4.a 3287 to 3551 265 to 1       265/265
(100 %)
0 diff
(100 %id)
F03476 brain, total brain CPNE4.a 3313 to 3547 235 to 1       235/235
(100 %)
0 diff
(100 %id)
F03803 brain, total brain CPNE4.a 3343 to 3547 205 to 1       205/205
(100 %)
0 diff
(100 %id)
AF465771 Prostate CPNE4.b 1 to 2227 2 to 2229 exact tiling clone,   2229/2231
(99 %)
2 diff
(100.0 %id)
AK128117 testis CPNE4.c 1 to 3985 293 to 4277 Q191* tiling clone, available from FLJ,   3985/4277
(93 %)
10 diff
(99.8 %id)
DB073905.
matches multiple genes
testis CPNE4.c 1 to 262 295 to 556   tiling clone, capped also hits gene nukume 262/555
(47 %)
6 diff
(99.0 %id)
BE973631 Prostate CPNE4.c 8 to 663 18 to 663   tiling clone,   646/827
(78 %)
17 diff
(98.0 %id)
BQ373255 prostate_tumor CPNE4.c 1315 to 1664 358 to 1       358/378
(94 %)
19 diff
(95.0 %id)
DA194161 amygdala CPNE4.c 1346 to 1834 2 to 490   capped   489/574
(85 %)
2 diff
(99.7 %id)
DA387018 thalamus CPNE4.c 1349 to 1834 2 to 487   capped   486/592
(82 %)
2 diff
(99.7 %id)
DA866216 Prostate CPNE4.c 1349 to 1834 2 to 487   capped   486/565
(86 %)
2 diff
(99.7 %id)
DA224186 brain CPNE4.c 1350 to 2005 2 to 657   capped   656/656
(100 %)
1 diff
(99.9 %id)
DA718974   CPNE4.c 1351 to 1834 2 to 485   capped   484/579
(83 %)
3 diff
(99.5 %id)
DA325575 hippocampus CPNE4.c 1354 to 1834 2 to 482   capped   481/562
(85 %)
3 diff
(99.5 %id)
DA396716 thalamus CPNE4.c 1354 to 1834 2 to 482   capped   481/591
(81 %)
3 diff
(99.5 %id)
DA523177 brain CPNE4.c 1354 to 1834 2 to 482   capped   481/564
(85 %)
2 diff
(99.7 %id)
DB168088 kidney, tumor tissue CPNE4.c 1357 to 1834 2 to 479   capped   478/585
(81 %)
3 diff
(99.5 %id)
DA166401 amygdala CPNE4.c 1360 to 1834 2 to 476   capped   475/551
(86 %)
2 diff
(99.7 %id)
DB233449 trachea CPNE4.c 1360 to 1834 2 to 476   capped   475/578
(82 %)
2 diff
(99.7 %id)
DB173058 kidney, tumor tissue CPNE4.c 1363 to 1834 2 to 473   capped   472/571
(82 %)
2 diff
(99.7 %id)
DA775715 brain CPNE4.c 1375 to 1836 2 to 463   capped   462/579
(79 %)
2 diff
(99.7 %id)
DA878963 Prostate CPNE4.c 1375 to 1962 2 to 589   capped   588/588
(100 %)
2 diff
(99.7 %id)
DA025596   CPNE4.c 1383 to 1834 2 to 453   capped   452/568
(79 %)
3 diff
(99.5 %id)
DA331664 hippocampus CPNE4.c 1383 to 1974 2 to 593   capped   592/592
(100 %)
2 diff
(99.7 %id)
DA784127 brain CPNE4.c 1383 to 1965 2 to 584   capped   583/583
(100 %)
5 diff
(99.2 %id)
BP326033 prostata CPNE4.c 1383 to 1964 1 to 581       581/581
(100 %)
3 diff
(99.5 %id)
DA392210 thalamus CPNE4.c 1384 to 1975 2 to 593   capped   592/592
(100 %)
1 diff
(99.9 %id)
DA707581   CPNE4.c 1384 to 1834 2 to 452   capped   451/570
(79 %)
3 diff
(99.5 %id)
DA776797 brain CPNE4.c 1384 to 1834 2 to 452   capped   451/577
(78 %)
2 diff
(99.7 %id)
DB168176 kidney, tumor tissue CPNE4.c 1385 to 1982 2 to 599   capped   598/598
(100 %)
1 diff
(99.9 %id)
DA181349 amygdala CPNE4.c 1388 to 1834 2 to 448   capped   447/567
(78 %)
2 diff
(99.7 %id)
DA344357 substantia nigra CPNE4.c 1388 to 1834 2 to 448   capped   447/564
(79 %)
2 diff
(99.7 %id)
DA401219 thalamus CPNE4.c 1388 to 1815 2 to 429   capped   428/428
(100 %)
1 diff
(99.8 %id)
DA402417 thalamus CPNE4.c 1388 to 1834 2 to 448   capped   447/544
(82 %)
2 diff
(99.7 %id)
DA226453 brain CPNE4.c 1389 to 2052 2 to 665   capped   664/664
(100 %)
2 diff
(99.7 %id)
DA391477 thalamus CPNE4.c 1390 to 1834 2 to 446   capped   445/570
(78 %)
2 diff
(99.7 %id)
DB172095 kidney, tumor tissue CPNE4.c 1390 to 1834 2 to 446   capped   445/565
(78 %)
3 diff
(99.5 %id)
DA213886 brain CPNE4.c 1391 to 1834 2 to 445   capped   444/536
(82 %)
2 diff
(99.7 %id)
DA275983 corpus callosum CPNE4.c 1391 to 1834 2 to 445   capped   444/558
(79 %)
2 diff
(99.7 %id)
DA397758 thalamus CPNE4.c 1391 to 1962 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA402146 thalamus CPNE4.c 1391 to 1940 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
CD636108   CPNE4.c 1398 to 2022 7 to 630       624/649
(96 %)
10 diff
(98.5 %id)
BC014396 Brain, neuroblastoma CPNE4.c 1401 to 3964 1 to 2564 exact available from MGC, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 2564/2564
(100 %)
1 diff
(100.0 %id)
NM_130808.1   CPNE4.c 1401 to 3964 1 to 2564 exact RefSeq, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 2564/2564
(100 %)
1 diff
(100.0 %id)
DA876829 Prostate CPNE4.c 1407 to 1970 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
CD636121   CPNE4.c 1408 to 2050 8 to 650       643/650
(98 %)
6 diff
(99.1 %id)
DA528059 brain CPNE4.c 1410 to 2024 2 to 616   capped   615/615
(100 %)
1 diff
(99.9 %id)
DA958742 Spleen CPNE4.c 1412 to 1948 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DA777069 brain CPNE4.c 1413 to 1985 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA786160 brain CPNE4.c 1413 to 1998 2 to 588   tiling clone, capped   587/587
(100 %)
1 diff
(99.9 %id)
AA371248 Prostate CPNE4.c 1417 to 1667 1 to 251       251/251
(100 %)
1 diff
(99.7 %id)
BY797600 eye CPNE4.c 1427 to 2016 1 to 590       590/590
(100 %)
3 diff
(99.5 %id)
DR000713 fetal brain CPNE4.c 1443 to 2156 1 to 714       714/714
(100 %)
6 diff
(99.2 %id)
CD636109   CPNE4.c 1446 to 1834 590 to 204       387/590
(65 %)
3 diff
(99.5 %id)
DA386585 thalamus CPNE4.c 1453 to 2038 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
CD636106   CPNE4.c 1466 to 1834 579 to 206       374/579
(64 %)
7 diff
(98.8 %id)
CD636107   CPNE4.c 1466 to 1834 1 to 369       369/480
(76 %)
2 diff
(99.6 %id)
DA524312 brain CPNE4.c 1483 to 2047 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
AK056175   CPNE4.c 1487 to 3964 1 to 2478 exact tiling clone, available from FLJ,   2478/2478
(100 %)
1 diff
(100.0 %id)
DA700524   CPNE4.c 1488 to 2010 2 to 524   capped   523/523
(100 %)
1 diff
(99.9 %id)
DA796352 brain CPNE4.c 1500 to 1834 2 to 336   capped   335/457
(73 %)
2 diff
(99.6 %id)
DA156722 amygdala CPNE4.c 1502 to 2003 2 to 505   capped   504/504
(100 %)
9 diff
(98.3 %id)
DA387371 thalamus CPNE4.c 1502 to 2071 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA515501 brain CPNE4.c 1502 to 2055 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA880102 Prostate CPNE4.c 1504 to 2029 2 to 527   capped   526/526
(100 %)
2 diff
(99.7 %id)
DA528708 brain CPNE4.c 1509 to 2022 2 to 515   capped   514/607
(84 %)
7 diff
(98.9 %id)
DA304903 hippocampus CPNE4.c 1512 to 2082 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA368355 subthalamic nucleus CPNE4.c 1512 to 2100 2 to 590   capped   589/589
(100 %)
2 diff
(99.7 %id)
DA772423 brain CPNE4.c 1522 to 2022 2 to 502   capped   501/577
(86 %)
5 diff
(99.2 %id)
CD636110   CPNE4.c 1543 to 2142 601 to 1       601/601
(100 %)
2 diff
(99.7 %id)
CD636111   CPNE4.c 1543 to 2022 1 to 481       481/603
(79 %)
6 diff
(99.1 %id)
CD636112   CPNE4.c 1543 to 2022 600 to 121       480/600
(80 %)
1 diff
(99.9 %id)
CD636113   CPNE4.c 1543 to 2022 1 to 480       480/601
(79 %)
5 diff
(99.2 %id)
CD636117   CPNE4.c 1543 to 2259 1 to 718       716/718
(99 %)
4 diff
(99.5 %id)
DA801900 brain CPNE4.c 1555 to 2022 2 to 469   capped   468/491
(95 %)
5 diff
(99.0 %id)
DA527759 brain CPNE4.c 1567 to 2160 2 to 595   capped   594/594
(100 %)
1 diff
(99.9 %id)
CD636116   CPNE4.c 1580 to 2326 747 to 1       747/748
(99 %)
1 diff
(99.9 %id)
CD636120   CPNE4.c 1585 to 2326 742 to 1       742/742
(100 %)
5 diff
(99.4 %id)
DB169458 kidney, tumor tissue CPNE4.c 1592 to 2171 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
BP231504 muscle CPNE4.c 1644 to 2226 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
DA209024 brain CPNE4.c 1665 to 2223 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
BC075046 Brain, PCR rescued clones CPNE4.c 1822 to 3535 13 to 1726 exact available from MGC,   1714/1726
(99 %)
7 diff
(99.6 %id)
DB173666 kidney, tumor tissue CPNE4.c 1822 to 2309 78 to 565   capped   488/564
(86 %)
7 diff
(98.8 %id)
TI_1948138534   CPNE4.c 1828 to 2520 120 to 813       694/1345
(51 %)
13 diff
(99.1 %id)
TI_1948138836   CPNE4.c 1828 to 2589 120 to 890       771/1419
(54 %)
16 diff
(98.9 %id)
TI_1948138241   CPNE4.c 1829 to 2520 121 to 814       695/1436
(48 %)
16 diff
(98.9 %id)
TI_1948138242   CPNE4.c 1829 to 2523 123 to 821       700/1393
(50 %)
17 diff
(98.8 %id)
TI_1948138533   CPNE4.c 1829 to 2520 117 to 809       694/1402
(49 %)
9 diff
(99.4 %id)
TI_1948139145   CPNE4.c 1829 to 2516 112 to 801       691/1454
(47 %)
24 diff
(98.4 %id)
TI_1948139146   CPNE4.c 1829 to 2520 121 to 814       695/1366
(50 %)
11 diff
(99.2 %id)
CV028101 mixed CPNE4.c 1836 to 2433 1 to 598       598/598
(100 %)
0 diff
(100 %id)
CD636115   CPNE4.c 1864 to 2326 1 to 464       464/465
(99 %)
5 diff
(99.0 %id)
CD636114   CPNE4.c 1866 to 2326 461 to 1       461/463
(99 %)
0 diff
(100 %id)
AL536384 brain, fetal brain CPNE4.c 2011 to 2749 1 to 739       739/739
(100 %)
0 diff
(100 %id)
CF552527 Pooled muscle (cardiac and skeletal) CPNE4.c 2014 to 2872 60 to 924       865/924
(93 %)
18 diff
(98.1 %id)
AW973974   CPNE4.c 2102 to 2466 475 to 111     Submitted on the opposite strand 365/576
(63 %)
1 diff
(99.9 %id)
AA578265 Prostate, prostatic intraepithelial neoplasia - highgrade CPNE4.c 2106 to 2466 368 to 8       361/378
(95 %)
1 diff
(99.8 %id)
CD636119   CPNE4.c 2189 to 2326 1 to 139       139/140
(99 %)
6 diff
(95.8 %id)
CD636118   CPNE4.c 2194 to 2326 133 to 1       133/138
(96 %)
0 diff
(100 %id)
H29499 whole brain CPNE4.c 2227 to 2702 1 to 479     Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 479/485
(98 %)
6 diff
(98.8 %id)
BP326505 prostata CPNE4.c 2459 to 3040 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BG185892   CPNE4.c 2511 to 2894 1 to 384       385/384
(100 %)
6 diff
(98.5 %id)
BG206097   CPNE4.c 2512 to 3232 17 to 725       716/826
(86 %)
29 diff
(96.5 %id)
BG186444   CPNE4.c 2515 to 3322 1 to 807       807/811
(99 %)
22 diff
(97.3 %id)
BG190156   CPNE4.c 2517 to 3228 1 to 713       713/827
(86 %)
47 diff
(94.4 %id)
BG192165   CPNE4.c 2517 to 2856 1 to 341       341/341
(100 %)
2 diff
(99.5 %id)
BG206098   CPNE4.c 2517 to 3305 1 to 781       781/781
(100 %)
15 diff
(98.1 %id)
Z41974 brain, total brain CPNE4.c 2521 to 2789 1 to 269       269/269
(100 %)
5 diff
(98.2 %id)
BF949741 nervous_normal CPNE4.c 2611 to 2945 447 to 113       335/447
(74 %)
0 diff
(100 %id)
BX431057 brain, fetal brain CPNE4.c 2635 to 3519 1 to 882       882/884
(99 %)
19 diff
(97.9 %id)
BX431058 brain, fetal brain CPNE4.c 2636 to 3563 1 to 918       918/918
(100 %)
14 diff
(98.5 %id)
Z42181 brain, total brain CPNE4.c 2682 to 2980 1 to 299       299/299
(100 %)
0 diff
(100 %id)
F05508 brain, total brain CPNE4.c 2682 to 2952 1 to 270       270/270
(100 %)
1 diff
(99.7 %id)
F13128 brain, total brain CPNE4.c 2682 to 2971 1 to 290       290/290
(100 %)
1 diff
(99.7 %id)
R11770 whole brain CPNE4.c 2683 to 3029 1 to 350       350/490
(71 %)
3 diff
(99.4 %id)
R19464 whole brain CPNE4.c 2683 to 3080 1 to 405       405/410
(98 %)
9 diff
(97.9 %id)
R56550 whole brain CPNE4.c 2683 to 3173 1 to 496       496/499
(99 %)
7 diff
(98.6 %id)
H12920 whole brain CPNE4.c 2683 to 3129 1 to 453       453/476
(95 %)
8 diff
(98.4 %id)
H14519 whole brain CPNE4.c 2683 to 2953 1 to 271       271/271
(100 %)
0 diff
(100 %id)
H29480 whole brain CPNE4.c 2689 to 3058 1 to 371       371/371
(100 %)
2 diff
(99.5 %id)
TI_1948138536   CPNE4.c 2695 to 3508 949 to 133       817/1486
(54 %)
19 diff
(98.8 %id)
BX440917 brain, fetal brain CPNE4.c 2708 to 3757 1 to 1039       1033/1084
(95 %)
25 diff
(97.7 %id)
TI_1948138535   CPNE4.c 2757 to 3508 865 to 103       763/1453
(52 %)
21 diff
(98.6 %id)
TI_1948138837   CPNE4.c 2761 to 3508 864 to 109       756/1380
(54 %)
24 diff
(98.3 %id)
TI_1948139147   CPNE4.c 2767 to 3508 881 to 133       749/1427
(52 %)
33 diff
(97.7 %id)
AA558008 bone marrow, stem cells CPNE4.c 2780 to 3086 1 to 307       307/321
(95 %)
10 diff
(96.9 %id)
T75384 whole brain CPNE4.c 2806 to 3129 1 to 326       326/478
(68 %)
3 diff
(99.4 %id)
CB054802 brain, glioblastoma (pooled) CPNE4.c 2864 to 3405 1 to 540   fully sequenced, Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 540/540
(100 %)
6 diff
(98.9 %id)
CB055199 brain, glioblastoma (pooled) CPNE4.c 2864 to 3347 1 to 484   fully sequenced, Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 484/484
(100 %)
5 diff
(99.0 %id)
DB484536 hypothalamus CPNE4.c 2875 to 3309 1 to 435       435/435
(100 %)
1 diff
(99.8 %id)
DB485447 hypothalamus CPNE4.c 2875 to 3298 1 to 424       424/424
(100 %)
1 diff
(99.8 %id)
DB494739 hypothalamus CPNE4.c 2875 to 3363 1 to 489       489/489
(100 %)
1 diff
(99.8 %id)
TI_1948138244   CPNE4.c 2896 to 3508 754 to 142       613/1386
(44 %)
8 diff
(99.5 %id)
BG192148   CPNE4.c 2897 to 3519 1 to 628       628/757
(82 %)
27 diff
(96.5 %id)
TI_1948139148   CPNE4.c 2898 to 3508 742 to 132       611/1393
(43 %)
9 diff
(99.4 %id)
TI_1948138838   CPNE4.c 2952 to 3508 686 to 130       557/1377
(40 %)
2 diff
(99.9 %id)
BE769156 prostate_tumor CPNE4.c 2999 to 3583 1 to 584       584/600
(97 %)
6 diff
(99.0 %id)
TI_1948138243   CPNE4.c 3004 to 3508 652 to 147       506/1281
(39 %)
20 diff
(98.5 %id)
AL566309 brain, fetal brain CPNE4.c 3084 to 3967 882 to 1       846/882
(95 %)
52 diff
(94.2 %id)
BG210847   CPNE4.c 3137 to 3978 845 to 8     Submitted on the opposite strand 838/883
(94 %)
28 diff
(96.9 %id)
AI927846 Kidney CPNE4.c 3159 to 3778 644 to 26   AAA   619/619
(100 %)
4 diff
(99.4 %id)
BG197778   CPNE4.c 3164 to 3984 823 to 2     Submitted on the opposite strand 822/825
(99 %)
21 diff
(97.5 %id)
BE768463 prostate_tumor CPNE4.c 3231 to 3586 363 to 8       356/363
(98 %)
0 diff
(100 %id)
BE645967 Prostate CPNE4.c 3234 to 3963 729 to 1       729/729
(100 %)
7 diff
(99.1 %id)
BE768603 prostate_tumor CPNE4.c 3235 to 3581 347 to 1       347/347
(100 %)
1 diff
(99.8 %id)
BE768546 prostate_tumor CPNE4.c 3241 to 3586 355 to 11       345/355
(97 %)
1 diff
(99.8 %id)
BE770852 prostate_tumor CPNE4.c 3295 to 3452 159 to 4       156/162
(96 %)
1 diff
(99.4 %id)
CB055198 brain, glioblastoma (pooled) CPNE4.c 3317 to 3985 693 to 25   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 669/669
(100 %)
0 diff
(100 %id)
AI972867 Prostate CPNE4.c 3342 to 3964 623 to 1       623/623
(100 %)
3 diff
(99.6 %id)
CB054801 brain, glioblastoma (pooled) CPNE4.c 3344 to 3985 666 to 25   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 642/642
(100 %)
3 diff
(99.6 %id)
DB340398.
matches multiple genes
testis CPNE4.c 3428 to 3985 558 to 1     also hits gene nukume 558/558
(100 %)
0 diff
(100 %id)
DB323672   CPNE4.c 3434 to 3964 532 to 1       532/532
(100 %)
1 diff
(99.9 %id)
BM750160 stomach CPNE4.c 3526 to 3985 1 to 459   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 459/459
(100 %)
1 diff
(99.8 %id)
DB565788 hypothalamus CPNE4.c 3527 to 3985 1 to 460     Submitted on the opposite strand 460/460
(100 %)
1 diff
(99.8 %id)
DB554514 hypothalamus CPNE4.c 3533 to 3985 1 to 453     Submitted on the opposite strand 453/453
(100 %)
5 diff
(98.9 %id)
DB553498 hypothalamus CPNE4.c 3547 to 3985 1 to 441     Submitted on the opposite strand 441/441
(100 %)
2 diff
(99.6 %id)
H29481 whole brain CPNE4.c 3552 to 3988 447 to 9       439/447
(98 %)
0 diff
(100 %id)
H29500 whole brain CPNE4.c 3566 to 3985 444 to 17   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 428/431
(99 %)
14 diff
(96.8 %id)
H14520 whole brain CPNE4.c 3568 to 3988 432 to 9       424/434
(97 %)
0 diff
(100 %id)
BE858072 brain, glioblastoma (pooled) CPNE4.c 3605 to 3977 373 to 1       373/373
(100 %)
3 diff
(99.2 %id)
AA876739 metastatic prostate bone lesion CPNE4.c 3608 to 3891 1 to 283       283/295
(95 %)
5 diff
(98.4 %id)
AA886522 metastatic prostate bone lesion CPNE4.c 3611 to 3681 9 to 79       71/79
(89 %)
6 diff
(92.5 %id)
AA894897 metastatic prostate bone lesion CPNE4.c 3611 to 3891 9 to 289       281/362
(77 %)
2 diff
(99.5 %id)
AI202596 Prostate CPNE4.c 3638 to 3963 326 to 1       326/326
(100 %)
1 diff
(99.7 %id)
H05506 whole brain CPNE4.c 3654 to 3988 345 to 8       338/435
(77 %)
0 diff
(100 %id)
F10731 brain, total brain CPNE4.c 3664 to 3987 324 to 1       324/324
(100 %)
0 diff
(100 %id)
R44711 whole brain CPNE4.c 3666 to 3988 331 to 9   tiling clone,   323/332
(97 %)
0 diff
(100 %id)
R56551 whole brain CPNE4.c 3667 to 3988 331 to 9       323/332
(97 %)
0 diff
(100 %id)
R38699 whole brain CPNE4.c 3676 to 3988 322 to 9       314/324
(96 %)
0 diff
(100 %id)
AI424130 brain, glioblastoma (pooled) CPNE4.c 3692 to 3977 284 to 1       284/284
(100 %)
7 diff
(97.6 %id)
R37692 whole brain CPNE4.c 3710 to 3988 293 to 9       285/293
(97 %)
0 diff
(100 %id)
Z38256 brain, total brain CPNE4.c 3721 to 3987 267 to 1       267/267
(100 %)
0 diff
(100 %id)
T23484   CPNE4.c 3743 to 3987 249 to 5       245/249
(98 %)
0 diff
(100 %id)
F01714 brain, total brain CPNE4.c 3754 to 3987 234 to 1       234/234
(100 %)
0 diff
(100 %id)
F01774 brain, total brain CPNE4.c 3763 to 3987 225 to 1       225/225
(100 %)
0 diff
(100 %id)
CR617237 fetal brain CPNE4.d 1 to 1958 1 to 1958 exact tiling clone,   1958/1958
(100 %)
0 diff
(100 %id)
DB309784 hippocampus CPNE4.d 1601 to 1976 376 to 1   tiling clone,   376/376
(100 %)
0 diff
(100 %id)
BG210137   CPNE4.e 1 to 641 1 to 636   tiling clone,   636/882
(72 %)
22 diff
(97.6 %id)
BG195215   CPNE4.e 7 to 789 2 to 783 S159L S164F V165I D174E F175L ... tiling clone,   782/783
(99 %)
20 diff
(97.5 %id)
DA576149   CPNE4.f 1 to 560 2 to 561 exact tiling clone, capped   560/560
(100 %)
0 diff
(100 %id)
DA562714 heart CPNE4.g 1 to 570 2 to 571   tiling clone, capped   570/570
(100 %)
0 diff
(100 %id)
DA560920 heart CPNE4.g 62 to 631 2 to 570 F59S S60V K61N S62L D63T ... tiling clone, capped   569/569
(100 %)
1 diff
(99.9 %id)
DA564451 heart CPNE4.g 62 to 612 2 to 552   capped   551/563
(97 %)
3 diff
(99.5 %id)
DA567334 heart CPNE4.g 62 to 615 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA560714 heart CPNE4.g 69 to 600 2 to 534   capped   533/533
(100 %)
2 diff
(99.7 %id)
DC316271 amygdala CPNE4.h 1 to 559 1 to 559   tiling clone,   559/559
(100 %)
1 diff
(99.9 %id)
DC322284 brain CPNE4.h 38 to 575 1 to 538 exact tiling clone,   538/538
(100 %)
1 diff
(99.9 %id)
CV390033 prostate_tumor CPNE4.i 1 to 355 3 to 355   tiling clone,   353/355
(99 %)
6 diff
(98.4 %id)
BG700767 brain, hippocampus CPNE4.i 67 to 857 1 to 790 A2X G88W K89Q G90R I91N ... available from MGC,   790/791
(99 %)
16 diff
(98.0 %id)
DB474618.
matches multiple genes
hippocampus CPNE4.i 72 to 581 1 to 509     also hits gene bloyswoybu 509/509
(100 %)
3 diff
(99.5 %id)
BC028613 Brain, hippocampus CPNE4.i 72 to 2367 6 to 2300 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 2295/2295
(100 %)
4 diff
(99.9 %id)
DA793325 brain CPNE4.j 1 to 538 2 to 539 exact tiling clone, capped   538/538
(100 %)
1 diff
(99.9 %id)
DA273513 caudate nucleus CPNE4.k 1 to 488 2 to 489   tiling clone, capped   488/549
(88 %)
5 diff
(99.1 %id)
AA431302   CPNE4.k 348 to 785 438 to 1   tiling clone,   438/438
(100 %)
0 diff
(100 %id)
BM930746 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid CPNE4.l 1 to 699 1 to 699 exact tiling clone, fully sequenced, Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 699/699
(100 %)
5 diff
(99.3 %id)
BM685268 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid CPNE4.l 83 to 708 637 to 14   tiling clone, fully sequenced, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 624/624
(100 %)
1 diff
(99.9 %id)
DA299476 hippocampus CPNE4.m 1 to 575 2 to 576 exact tiling clone, capped   575/575
(100 %)
1 diff
(99.9 %id)
BX106922 Prostate CPNE4.n-u 1 to 486 1 to 486 exact tiling clone,   486/486
(100 %)
1 diff
(99.8 %id)
AI669202 Prostate CPNE4.n-u 307 to 791 512 to 28   tiling clone, AAA   485/485
(100 %)
0 diff
(100 %id)
BQ271271 Pancreas, Purified pancreatic islet CPNE4.o-u 1 to 575 1 to 575 exact tiling clone,   575/575
(100 %)
1 diff
(99.9 %id)
BX641548   CPNE4.p-u 1 to 574 1 to 574 K11I tiling clone,   574/574
(100 %)
2 diff
(99.7 %id)
BP219781 caudate nucleus CPNE4.q 1 to 547 1 to 549 exact tiling clone,   549/582
(94 %)
9 diff
(98.5 %id)
AA431658   CPNE4.r 1 to 447 1 to 447 exact tiling clone,   447/447
(100 %)
0 diff
(100 %id)
CV319184 nervous_normal CPNE4.s-u 1 to 414 5 to 418 exact tiling clone,   414/418
(99 %)
6 diff
(98.6 %id)
BE773554 prostate_tumor CPNE4.t-u 1 to 398 1 to 398 V27G tiling clone,   398/398
(100 %)
2 diff
(99.5 %id)
BE773557 prostate_tumor CPNE4.t-u 1 to 370 1 to 370 K21R V27G R49T R56G tiling clone,   370/370
(100 %)
6 diff
(98.4 %id)
AF465770 Prostate Gene CPNE4, variant not shown         Suspected internal deletion, this clone was ignored    
DR003645 hippocampus Gene CPNE4, variant not shown              
AA508828 Prostate Gene CPNE4, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n-u, .o-u, .p-u, .q, .r, .s-u, .t-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI