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Gene CPN1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
61 supporting clones for gene CPN1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK313972 liver, tumor tissue .a 1 to 1652 2 to 1653 exact tiling clone,   1653/1653
(100 %)
0 diff
(100 %id)
DB186735 liver, tumor tissue .a 1 to 562 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
CR608830 fetal liver .a 16 to 1733 1 to 1718 exact     1718/1718
(100 %)
0 diff
(100 %id)
AL564473 brain, fetal liver, Liver, neuroblastoma cells .a 16 to 1007 1 to 980       980/986
(99 %)
16 diff
(98.4 %id)
NM_001308.2   .a 16 to 1771 1 to 1756 exact RefSeq,   1756/1756
(100 %)
0 diff
(100 %id)
TI_57167224   .a 19 to 668 29 to 678       650/678
(95 %)
6 diff
(99.2 %id)
BC027897 Pancreas, Spleen, adult pooled .a 24 to 1767 1 to 1744 exact tiling clone, available from MGC, AAA   1744/1744
(100 %)
1 diff
(100.0 %id)
BI835624 pooled pancreas and spleen .a 24 to 668 1 to 645       645/645
(100 %)
0 diff
(100 %id)
BJ994129 hepatoblastoma .a 38 to 498 1 to 460       460/462
(99 %)
1 diff
(99.8 %id)
CR597710 T cells (Jurkat cell line) .a 41 to 1733 1 to 1693 exact     1693/1693
(100 %)
0 diff
(100 %id)
BX426659 T cells (Jurkat cell line) .a 41 to 853 1 to 811       811/971
(83 %)
4 diff
(99.6 %id)
DA037016 breast .a 44 to 626 2 to 584   capped   583/583
(100 %)
3 diff
(99.5 %id)
X14329   .a 63 to 1764 1 to 1702 exact     1702/1702
(100 %)
1 diff
(100.0 %id)
AL564792 brain, fetal liver, Liver, neuroblastoma cells .a 67 to 882 1 to 815   fully sequenced,   815/815
(100 %)
3 diff
(99.7 %id)
CR603435 fetal liver .a 68 to 1739 1 to 1672 exact     1672/1672
(100 %)
0 diff
(100 %id)
CV029574 mixed .a 276 to 929 1 to 653       653/655
(99 %)
4 diff
(99.4 %id)
TI_1948079127   .a 276 to 987 132 to 848       717/1115
(64 %)
30 diff
(97.4 %id)
TI_1948079128   .a 276 to 1288 128 to 1139       1012/1342
(75 %)
17 diff
(98.8 %id)
TI_1948079471   .a 276 to 857 131 to 715       585/1104
(52 %)
18 diff
(98.4 %id)
TI_1948079472   .a 276 to 1146 126 to 993   AAA   868/1328
(65 %)
23 diff
(98.3 %id)
TI_1948079818   .a 276 to 990 130 to 855       724/1124
(64 %)
39 diff
(96.6 %id)
TI_1948079819   .a 276 to 1150 128 to 1006       879/1440
(61 %)
30 diff
(98.0 %id)
TI_1948080173   .a 276 to 1034 128 to 893       766/1110
(69 %)
45 diff
(96.0 %id)
TI_1948080174   .a 276 to 1287 128 to 1140       1008/1366
(73 %)
22 diff
(98.4 %id)
TI_1948080175   .a 685 to 1651 1100 to 129       972/1246
(78 %)
31 diff
(97.6 %id)
BX453690 fetal liver, Liver .a 695 to 1330 637 to 1       637/639
(99 %)
26 diff
(96.0 %id)
TI_1948079129   .a 695 to 1651 1094 to 129       966/1230
(78 %)
28 diff
(97.8 %id)
TI_1948079820   .a 698 to 1651 1086 to 128       959/1251
(76 %)
18 diff
(98.6 %id)
BX431886 fetal liver, Liver .a 734 to 1608 1 to 865       865/879
(98 %)
33 diff
(96.3 %id)
TI_1948079473   .a 791 to 1651 999 to 128       870/1242
(70 %)
14 diff
(98.9 %id)
AL564720 brain, fetal liver, Liver, neuroblastoma cells .a 821 to 1739 917 to 1   fully sequenced,   917/917
(100 %)
31 diff
(96.7 %id)
BX426658 T cells (Jurkat cell line) .a 849 to 1733 892 to 1       892/1005
(88 %)
17 diff
(98.4 %id)
BX098642   .a 958 to 1437 1 to 480       480/480
(100 %)
0 diff
(100 %id)
BM042306 melanotic melanoma, cell line, skin .a 961 to 1417 1 to 457   fully sequenced,   457/457
(100 %)
1 diff
(99.8 %id)
BU172385 melanotic melanoma, cell line, skin .a 962 to 1767 37 to 844       808/961
(84 %)
25 diff
(97.4 %id)
BQ676439 melanotic melanoma, cell line, skin .a 962 to 1767 16 to 821       806/959
(84 %)
24 diff
(97.5 %id)
BU838862 melanotic melanoma, cell line, skin .a 964 to 1703 1 to 745       745/959
(77 %)
12 diff
(98.8 %id)
TI_1948079821   .a 1022 to 1651 756 to 124       633/1158
(54 %)
18 diff
(98.5 %id)
TI_1948079474   .a 1024 to 1651 738 to 111       628/1105
(56 %)
13 diff
(98.9 %id)
TI_1948080176   .a 1024 to 1651 757 to 123       635/1197
(53 %)
19 diff
(98.5 %id)
TI_1948079130   .a 1033 to 1651 747 to 123       625/1170
(53 %)
34 diff
(97.1 %id)
AW188007 pooled .a 1099 to 1769 671 to 3       669/671
(99 %)
5 diff
(99.3 %id)
AL564776 brain, fetal liver, Liver, neuroblastoma cells .a 1147 to 1733 589 to 1       589/589
(100 %)
7 diff
(98.9 %id)
AA548125 germ cell tumor .a 1154 to 1769 610 to 2       609/610
(99 %)
15 diff
(97.6 %id)
BE465608 malignant melanoma, metastatic to lymphnode, skin .a 1165 to 1767 601 to 1       601/605
(99 %)
5 diff
(99.2 %id)
BE220892 malignant melanoma, metastatic to lymphnode, skin .a 1193 to 1773 583 to 3       581/583
(99 %)
2 diff
(99.7 %id)
AI287655 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1207 to 1766 554 to 1       554/554
(100 %)
10 diff
(98.2 %id)
AW184009 pooled .a 1234 to 1769 536 to 3       534/536
(99 %)
7 diff
(98.7 %id)
AI952742 pooled germ cell tumors .a 1276 to 1770 495 to 1       495/495
(100 %)
0 diff
(100 %id)
AI201195   .a 1284 to 1769 489 to 3       487/494
(98 %)
3 diff
(99.4 %id)
DB520757 testis .a 1302 to 1764 1 to 463     Submitted on the opposite strand 463/463
(100 %)
0 diff
(100 %id)
AA991885 germ cell tumor .a 1302 to 1771 469 to 2       468/469
(99 %)
13 diff
(97.3 %id)
AA679422 liver and spleen .a 1305 to 1749 437 to 1       437/437
(100 %)
9 diff
(98.0 %id)
AW003077 pooled germ cell tumors .a 1313 to 1767 453 to 1       453/453
(100 %)
1 diff
(99.8 %id)
T28669 gallbladder .a 1321 to 1575 1 to 256       256/256
(100 %)
4 diff
(98.5 %id)
AI076669 liver and spleen .a 1338 to 1767 430 to 1       430/430
(100 %)
0 diff
(100 %id)
BM042910 melanotic melanoma, cell line, skin .a 1356 to 1697 362 to 22   fully sequenced,   341/362
(94 %)
1 diff
(99.8 %id)
AW138412   .a 1521 to 1770 267 to 18   AAA   250/250
(100 %)
8 diff
(96.8 %id)
DB455350 testis .b 1 to 478 1 to 478   tiling clone,   478/478
(100 %)
1 diff
(99.8 %id)
BU171978 melanotic melanoma, cell line, skin .b 32 to 710 24 to 705   tiling clone,   682/993
(68 %)
19 diff
(98.1 %id)
AW950687   .b 525 to 1174 1 to 646   tiling clone,   646/646
(100 %)
21 diff
(96.8 %id)
BX447996 fetal liver, Liver Gene CPN1, variant not shown         This clone was ignored    
BX447997 fetal liver, Liver Gene CPN1, variant not shown         This clone was ignored    
AV655691 corresponding non cancerous liver tissue Gene CPN1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AI827992 pooled Gene CPN1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI