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Gene CPA3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
114 supporting clones for gene CPA3 back to top
cDNA accession
Links to the sequence		 Tissue

most 5' clones
in red		 Match
mRNA		 From bp
to bp
in mRNA		 From bp
to bp
in accs.		 Clone encodes
complete protein
(with AA variation)		 Features Anomalies
detected by
AceView		 Accession
match over
(% length)		 Base differences
relative to genome
(% identity)
AJ714303 bone marrow .a 840 to 1008 14 to 181       168/181
(92 %)		 6 diff
(96.7 %id)
AK313628 trachea .a 42 to 1307 1 to 1266 T171M S243P     1266/1266
(100 %)		 4 diff
(99.7 %id)
AW973026   .b 601 to 1112 512 to 1     Submitted on the opposite strand 512/512
(100 %)		 21 diff
(95.9 %id)
BC012613 Bone marrow, acute myelogenous leukemia .a 39 to 1683 1 to 1645 N63K T171M tiling clone, available from MGC, AAA   1645/1645
(100 %)		 6 diff
(99.7 %id)
BI006148 kidney_tumor .a 267 to 929 11 to 674       664/674
(98 %)		 38 diff
(94.4 %id)
BM272553 insulinoma, Pancreas .a 567 to 1184 1 to 618     Submitted on the opposite strand 618/618
(100 %)		 2 diff
(99.7 %id)
BX105358 lung .c-u 51 to 642 1 to 592 exact tiling clone, AAA   592/592
(100 %)		 0 diff
(100 %id)
AV740896 cord Blood .a 25 to 527 47 to 531       479/593
(80 %)		 27 diff
(95.5 %id)
CD687232 normal nasopharynx .a 40 to 673 20 to 653       634/653
(97 %)		 9 diff
(98.7 %id)
CD701870 normal nasopharynx .a 40 to 293 39 to 292       254/292
(86 %)		 9 diff
(97.0 %id)
CD705432 normal nasopharynx .a 40 to 394 18 to 373       356/373
(95 %)		 9 diff
(97.6 %id)
CA393298 eye, RPE/choroid .a 55 to 592 1 to 538       538/538
(100 %)		 1 diff
(99.9 %id)
CV345504 kidney_tumor .a 267 to 876 24 to 631       608/631
(96 %)		 8 diff
(98.8 %id)
AV713325   .a 1029 to 1532 1 to 504       504/504
(100 %)		 0 diff
(100 %id)
AV711717   .a 1029 to 1532 1 to 504       504/504
(100 %)		 0 diff
(100 %id)
BP227040   .a 35 to 621 1 to 587       587/587
(100 %)		 6 diff
(99.0 %id)
BP228027   .a 41 to 608 1 to 566       566/566
(100 %)		 5 diff
(99.2 %id)
BP228101   .a 42 to 622 1 to 582       582/582
(100 %)		 5 diff
(99.2 %id)
EL733414 mixed .a 54 to 694 1 to 637       637/644
(98 %)		 10 diff
(98.5 %id)
FN051856 breast carcinoma .b 1194 to 1307 1 to 113   tiling clone,   113/114
(99 %)		 2 diff
(98.3 %id)
FN056718 breast carcinoma .c-u 1 to 115 1 to 116   tiling clone,   116/116
(100 %)		 1 diff
(99.2 %id)
FN059357 breast carcinoma .b 971 to 1068 7 to 104       98/104
(94 %)		 6 diff
(94.3 %id)
FN059359 breast carcinoma .b 887 to 988 102 to 1     Submitted on the opposite strand 102/103
(99 %)		 0 diff
(100 %id)
FN071404 breast carcinoma .a 737 to 820 1 to 83       83/83
(100 %)		 3 diff
(96.4 %id)
FN071846 breast carcinoma .b 1056 to 1128 1 to 75       75/76
(98 %)		 4 diff
(94.8 %id)
FN072538 breast carcinoma .b 1056 to 1130 1 to 76   tiling clone,   76/76
(100 %)		 5 diff
(93.5 %id)
FN075571 breast carcinoma .a 744 to 847 1 to 103       103/103
(100 %)		 3 diff
(97.1 %id)
FN076104 breast carcinoma .a 1080 to 1171 92 to 1     Submitted on the opposite strand 92/93
(98 %)		 0 diff
(100 %id)
FN082081 breast carcinoma .b 1194 to 1303 1 to 109   tiling clone,   109/113
(96 %)		 4 diff
(96.5 %id)
FN098896 breast carcinoma .b 796 to 895 1 to 97       97/100
(97 %)		 4 diff
(96.0 %id)
FN101354 breast carcinoma .b 676 to 733 58 to 1     Submitted on the opposite strand 58/58
(100 %)		 0 diff
(100 %id)
FN103739 breast carcinoma .b 855 to 925 1 to 70       70/71
(98 %)		 2 diff
(97.2 %id)
FN108259 breast carcinoma .b 544 to 618 1 to 73       73/73
(100 %)		 5 diff
(93.2 %id)
FN115388 breast carcinoma .a 985 to 1086 1 to 103       103/105
(98 %)		 2 diff
(98.1 %id)
FN121576 breast carcinoma .b 942 to 1046 1 to 106       106/111
(95 %)		 3 diff
(97.3 %id)
FN122497 breast carcinoma .a 851 to 948 1 to 95       95/95
(100 %)		 5 diff
(94.8 %id)
FN123973 breast carcinoma .b 652 to 737 85 to 1     Submitted on the opposite strand 85/88
(96 %)		 5 diff
(94.4 %id)
FN124084 breast carcinoma .b 998 to 1100 1 to 104       104/104
(100 %)		 1 diff
(99.1 %id)
FN127891 breast carcinoma .a 1049 to 1150 1 to 103       103/103
(100 %)		 1 diff
(99.1 %id)
FN130861 breast carcinoma .b 772 to 847 77 to 1     Submitted on the opposite strand 77/78
(98 %)		 2 diff
(97.5 %id)
FN136277 breast carcinoma .b 1023 to 1109 1 to 90       90/91
(98 %)		 5 diff
(94.6 %id)
FN136802 breast carcinoma .a 770 to 866 1 to 94       94/94
(100 %)		 4 diff
(95.8 %id)
FN145045 breast carcinoma .b 821 to 941 117 to 1     Submitted on the opposite strand 117/117
(100 %)		 4 diff
(96.6 %id)
FN148485 breast carcinoma .b 972 to 1068 1 to 94       94/94
(100 %)		 3 diff
(96.9 %id)
FN162886 breast carcinoma .a 832 to 921 88 to 1     Submitted on the opposite strand 88/94
(93 %)		 6 diff
(93.7 %id)
FN168646 breast carcinoma .a 851 to 948 98 to 1     Submitted on the opposite strand 98/98
(100 %)		 2 diff
(98.0 %id)
FN169271 breast carcinoma .b 850 to 965 117 to 1     Submitted on the opposite strand 117/117
(100 %)		 1 diff
(99.2 %id)
FN173542 breast carcinoma .d-u 1 to 86 1 to 87 I17N P18T L19I T20D S22Q ... tiling clone,   87/87
(100 %)		 4 diff
(95.5 %id)
GD148689   .b 1049 to 1106 1 to 57   AAA   57/57
(100 %)		 2 diff
(96.5 %id)
GD159672   .b 1048 to 1114 1 to 67       67/78
(85 %)		 2 diff
(97.5 %id)
DA587602 lung .a 41 to 573 2 to 534   capped   533/533
(100 %)		 3 diff
(99.5 %id)
DA592375 lung .a 46 to 614 2 to 571   capped   570/570
(100 %)		 2 diff
(99.7 %id)
AU107265   .a 42 to 91 1 to 50       50/50
(100 %)		 1 diff
(98.0 %id)
BP260555 small intestine .a 42 to 624 1 to 583       583/583
(100 %)		 2 diff
(99.7 %id)
AU107266   .a 42 to 91 1 to 50       50/50
(100 %)		 2 diff
(96.0 %id)
BP261355 small intestine .a 42 to 624 1 to 583       583/583
(100 %)		 3 diff
(99.5 %id)
BP262575 small intestine .a 42 to 622 1 to 581       581/581
(100 %)		 6 diff
(99.0 %id)
BP263761 small intestine .a 42 to 622 1 to 582       582/582
(100 %)		 11 diff
(98.2 %id)
T64223 lung .a 1414 to 1681 283 to 10       274/290
(94 %)		 0 diff
(100 %id)
T64409 lung .a 751 to 970 1 to 208       208/208
(100 %)		 16 diff
(92.4 %id)
N79582 lung .c-u 470 to 642 173 to 1   fully sequenced,   173/173
(100 %)		 0 diff
(100 %id)
W16617 lung .c-u 51 to 500 1 to 442 exact fully sequenced,   442/442
(100 %)		 1 diff
(99.8 %id)
AA233142.
matches multiple genes		 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 662 to 1096 442 to 1     also hits gene C11orf95 442/442
(100 %)		 53 diff
(88.1 %id)
AA233718 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 830 to 1326 1 to 497       497/497
(100 %)		 0 diff
(100 %id)
AA548892 normal prostate, Prostate .b 543 to 1113 566 to 1       566/587
(96 %)		 9 diff
(98.5 %id)
AA974649 Kidney, kidney tumor .b 583 to 1106 538 to 17   tiling clone, AAA   522/522
(100 %)		 32 diff
(93.9 %id)
AI092738 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 634 to 1094 453 to 1       453/456
(99 %)		 51 diff
(88.9 %id)
AI669644 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 543 to 1105 564 to 1       564/610
(92 %)		 6 diff
(99.1 %id)
AI925693 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 494 to 1219 724 to 1   tiling clone,   724/724
(100 %)		 12 diff
(98.4 %id)
AI961715 thymus, pooled .b 554 to 1098 555 to 13   AAA   543/579
(93 %)		 30 diff
(94.9 %id)
BF508919   .a 969 to 1683 732 to 18   AAA   715/715
(100 %)		 1 diff
(99.9 %id)
BE326998 Kidney .a 1055 to 1684 630 to 1       630/630
(100 %)		 2 diff
(99.7 %id)
BF002788 Prostate .b 817 to 1094 278 to 1       278/278
(100 %)		 1 diff
(99.7 %id)
BF478157 pooled germ cell tumors .b 840 to 1098 269 to 11   AAA   259/261
(99 %)		 2 diff
(99.3 %id)
BF242520 bone marrow, from acute myelogenous leukemia .a 42 to 688 1 to 641       641/875
(73 %)		 17 diff
(98.1 %id)
BF241145 bone marrow, from acute myelogenous leukemia .b 543 to 1107 14 to 575       562/577
(97 %)		 23 diff
(96.1 %id)
BG501260 adenocarcinoma, Prostate .a 1 to 685 1 to 702   tiling clone,   702/702
(100 %)		 31 diff
(95.6 %id)
BG537482 lung .a 42 to 425 1 to 388       388/526
(73 %)		 5 diff
(99.1 %id)
BI769240 pooled lung and spleen .a 53 to 896 1 to 859       856/859
(99 %)		 40 diff
(95.4 %id)
CK822804 insulinoma, Pancreas .a 618 to 1172 1 to 555     Submitted on the opposite strand 555/555
(100 %)		 0 diff
(100 %id)
CK822805 insulinoma, Pancreas .b 544 to 1094 551 to 1   tiling clone, Submitted on the opposite strand 551/567
(97 %)		 5 diff
(99.2 %id)
BU160770 bone marrow, from acute myelogenous leukemia .a 118 to 734 1 to 619       619/838
(73 %)		 17 diff
(98.0 %id)
CD245136 White Matter .a 118 to 829 1 to 720       720/888
(81 %)		 16 diff
(98.2 %id)
TI_57183256   .a 53 to 896 30 to 888       856/888
(96 %)		 46 diff
(94.9 %id)
AU100115   .a 42 to 341 1 to 300       300/300
(100 %)		 2 diff
(99.4 %id)
AU107268   .a 42 to 91 1 to 50       50/50
(100 %)		 1 diff
(98.0 %id)
BP292937 lung .a 42 to 623 1 to 582       582/582
(100 %)		 3 diff
(99.5 %id)
M27717   .a 54 to 1675 1 to 1622 T171M     1622/1622
(100 %)		 2 diff
(99.9 %id)
AV760428 bone marrow .a 24 to 960 1 to 925       925/1252
(73 %)		 42 diff
(96.7 %id)
NM_001870.2   .a 2 to 1683 1 to 1682 exact RefSeq, AAA   1682/1682
(100 %)		 0 diff
(100 %id)
DA885989   .b 1 to 545 2 to 546   tiling clone, capped   545/545
(100 %)		 0 diff
(100 %id)
BM769163 stomach .a 547 to 1019 1 to 473       473/473
(100 %)		 6 diff
(98.8 %id)
S40234   .a 381 to 1307 1 to 927       927/927
(100 %)		 6 diff
(99.4 %id)
TI_1948242519   .a 42 to 1113 122 to 1186       1065/1348
(79 %)		 48 diff
(96.5 %id)
TI_1948242520   .a 42 to 1035 123 to 1114   AAA   992/1382
(71 %)		 31 diff
(97.8 %id)
TI_1948242521   .a 627 to 1313 808 to 122       687/1254
(54 %)		 9 diff
(99.3 %id)
TI_1948242809   .a 42 to 1018 116 to 1098       983/1395
(70 %)		 38 diff
(97.3 %id)
TI_1948242810   .a 42 to 1034 118 to 1099       982/1351
(72 %)		 38 diff
(97.2 %id)
TI_1948242811   .a 425 to 1313 1017 to 121       897/1288
(69 %)		 28 diff
(97.9 %id)
TI_1948243094   .a 42 to 831 115 to 905       791/1389
(56 %)		 13 diff
(99.1 %id)
TI_1948243095   .a 42 to 831 117 to 906       790/1343
(58 %)		 13 diff
(99.1 %id)
TI_1948243096   .a 414 to 1313 1027 to 121       905/1295
(69 %)		 21 diff
(98.4 %id)
TI_1948243097   .a 832 to 1313 592 to 104       489/1408
(34 %)		 20 diff
(98.6 %id)
TI_1948243383   .a 42 to 1035 117 to 1104       988/1381
(71 %)		 35 diff
(97.5 %id)
TI_1948243384   .a 627 to 1313 809 to 118       692/1327
(52 %)		 8 diff
(99.4 %id)
DA927496 small intestine .a 46 to 597 9 to 560   capped   552/552
(100 %)		 1 diff
(99.9 %id)
DA965065 stomach .a 43 to 619 2 to 578   capped   577/577
(100 %)		 1 diff
(99.9 %id)
DR005288 Prostate .a 52 to 745 1 to 694   tiling clone,   694/694
(100 %)		 3 diff
(99.6 %id)
DB027802 testis .a 44 to 642 2 to 601   capped   600/600
(100 %)		 2 diff
(99.7 %id)
DB048509 testis .a 43 to 606 2 to 565   capped   564/564
(100 %)		 1 diff
(99.9 %id)
DB120462 thymus .a 42 to 600 2 to 561   capped   560/560
(100 %)		 3 diff
(99.5 %id)
DB124365 thymus .a 44 to 598 2 to 556   capped   555/555
(100 %)		 1 diff
(99.9 %id)
DB201938 trachea .a 43 to 597 2 to 556   capped   555/555
(100 %)		 1 diff
(99.9 %id)
DB248135 uterus .a 43 to 557 2 to 516   capped   515/516
(99 %)		 2 diff
(99.7 %id)
DB265100 uterus .a 43 to 633 2 to 593   capped   592/592
(100 %)		 3 diff
(99.5 %id)
AW207722   .a 42 to 831 117 to 906   AAA Suspected internal deletion, this clone was ignored 790/1343
(58 %)		 13 diff
(99.1 %id)
TI_1948243096   .a 414 to 1313 1027 to 121       905/1295
(69 %)		 21 diff
(98.4 %id)
TI_1948243097   .a 832 to 1313 592 to 104       489/1408
(34 %)		 20 diff
(98.6 %id)
TI_1948243383   .a 42 to 1035 117 to 1104       988/1381
(71 %)		 35 diff
(97.5 %id)
TI_1948243384   .a 627 to 1313 809 to 118       692/1327
(52 %)		 8 diff
(99.4 %id)
DA927496 small intestine .a 46 to 597 9 to 560   capped   552/552
(100 %)		 1 diff
(99.9 %id)
DA965065 stomach .a 43 to 619 2 to 578   capped   577/577
(100 %)		 1 diff
(99.9 %id)
DR005288 Prostate .a 52 to 745 1 to 694   tiling clone,   694/694
(100 %)		 3 diff
(99.6 %id)
DB027802 testis .a 44 to 642 2 to 601   capped   600/600
(100 %)		 2 diff
(99.7 %id)
DB048509 testis .a 43 to 606 2 to 565   capped   564/564
(100 %)		 1 diff
(99.9 %id)
DB120462 thymus .a 42 to 600 2 to 561   capped   560/560
(100 %)		 3 diff
(99.5 %id)
DB124365 thymus .a 44 to 598 2 to 556   capped   555/555
(100 %)		 1 diff
(99.9 %id)
DB201938 trachea .a 43 to 597 2 to 556   capped   555/555
(100 %)		 1 diff
(99.9 %id)
DB248135 uterus .a 43 to 557 2 to 516   capped   515/516
(99 %)		 2 diff
(99.7 %id)
DB265100 uterus .a 43 to 633 2 to 593   capped   592/592
(100 %)		 3 diff
(99.5 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC