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Gene COX6A1andGATCTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
525 representative clones for gene COX6A1andGATC back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AV750702 Pituitary .a 1 to 552 1 to 544 K15X V21X E41X I55X E89X ... tiling clone,   544/544
(100 %)
20 diff
(96.4 %id)
H92464 pineal gland .a 26 to 149 1 to 124       124/124
(100 %)
4 diff
(96.8 %id)
H51649.
matches multiple genes
liver and spleen .a 73 to 139 1 to 68     also hits gene COX6A1P2 68/68
(100 %)
2 diff
(97.1 %id)
DA582112 lung .a 160 to 705 2 to 548   tiling clone, capped   547/547
(100 %)
1 diff
(99.9 %id)
EC510204 Prostate .a 568 to 671 1 to 102       102/102
(100 %)
2 diff
(98.1 %id)
EC538581 Prostate .a 568 to 668 1 to 97       97/100
(97 %)
5 diff
(95.0 %id)
EC481490 Prostate .a 569 to 671 1 to 103       103/103
(100 %)
0 diff
(100 %id)
BU958265 mixed (pool of 40 RNAs) .b 1 to 494 8 to 501 exact     501/502
(99 %)
2 diff
(99.7 %id)
NM_176818.2   .b 1 to 4241 8 to 4248 exact RefSeq,   4248/4248
(100 %)
0 diff
(100 %id)
TI_44350649   .b 1 to 822 116 to 941 S3L     829/941
(88 %)
11 diff
(98.9 %id)
DA833302 placenta .b 1 to 606 5 to 610 exact capped   609/609
(100 %)
2 diff
(99.7 %id)
DA833713 placenta .b 1 to 734 5 to 741 exact capped   740/744
(99 %)
6 diff
(99.2 %id)
DB197575 trachea .b 1 to 579 5 to 583 exact capped   582/582
(100 %)
1 diff
(99.9 %id)
DB256355 uterus .b 1 to 558 5 to 563 E38X H39A L40P E41G R42A ... capped   562/562
(100 %)
1 diff
(99.9 %id)
AK094319 cerebellum .b 1 to 2074 2 to 2075 exact tiling clone, available from FLJ,   2075/2075
(100 %)
8 diff
(99.7 %id)
DA207867 brain .b 1 to 586 3 to 589 V36G I37D E38R H39A L40P ... capped   588/588
(100 %)
2 diff
(99.7 %id)
DA059604 cerebellum .b 1 to 556 2 to 557 exact capped   556/556
(100 %)
0 diff
(100 %id)
DA275220 corpus callosum .b 1 to 544 2 to 546 D25G P26S Q27S S29Q G30W ... capped   545/545
(100 %)
1 diff
(99.9 %id)
DA280889 corpus callosum .b 1 to 547 2 to 548 exact capped   547/547
(100 %)
0 diff
(100 %id)
DA288079 corpus callosum .b 1 to 560 2 to 562 R42X L43S A44S L45A V46C ... capped   561/561
(100 %)
1 diff
(99.9 %id)
DA352134 substantia nigra .b 1 to 549 2 to 550 exact capped   549/549
(100 %)
0 diff
(100 %id)
DA355399 subthalamic nucleus .b 1 to 558 2 to 559 exact capped   558/558
(100 %)
1 diff
(99.9 %id)
DA538966 Kidney .b 1 to 582 2 to 587 R31L I32D T33H A34W A35L ... capped   586/586
(100 %)
4 diff
(99.4 %id)
DA666283   .b 1 to 548 8 to 557 A34G A35C V36R I37* capped   550/550
(100 %)
3 diff
(99.5 %id)
DA688190   .b 1 to 547 2 to 548 exact capped   547/547
(100 %)
0 diff
(100 %id)
DA830009 placenta .b 1 to 725 2 to 731 exact capped   730/735
(99 %)
6 diff
(99.2 %id)
DA876116 Prostate .b 1 to 541 2 to 542 exact capped   541/541
(100 %)
1 diff
(99.9 %id)
DA383952 thalamus .b 3 to 560 2 to 559 exact capped   558/558
(100 %)
1 diff
(99.9 %id)
DA439284 tongue, tumor tissue .b 3 to 550 2 to 549 exact capped   548/548
(100 %)
1 diff
(99.9 %id)
DA914549   .b 3 to 568 2 to 567 V111A capped   566/566
(100 %)
3 diff
(99.5 %id)
DA373855 thalamus .b 5 to 575 2 to 568 exact capped   567/567
(100 %)
3 diff
(99.5 %id)
BI561431 testis .b 7 to 822 1 to 820 S3L     820/820
(100 %)
9 diff
(99.0 %id)
CN352728 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 11 to 739 1 to 729 S3L     729/729
(100 %)
5 diff
(99.4 %id)
DA887268   .b 11 to 561 2 to 552 exact capped   551/551
(100 %)
0 diff
(100 %id)
DA029560   .b 13 to 586 2 to 577 H39Q L40X E41G R42A L43S ... capped   576/576
(100 %)
2 diff
(99.7 %id)
DA118451 cerebellum .b 13 to 552 2 to 541 M78I capped   540/540
(100 %)
2 diff
(99.7 %id)
DA286511 corpus callosum .b 13 to 565 2 to 554 exact capped   553/553
(100 %)
0 diff
(100 %id)
DA295968 hippocampus .b 13 to 563 2 to 552 exact capped   551/551
(100 %)
0 diff
(100 %id)
DA607385   .b 13 to 574 2 to 563 exact capped   562/562
(100 %)
2 diff
(99.7 %id)
AU126269   .b 13 to 692 2 to 682 E38X E52X I61T T72A E113X capped   681/681
(100 %)
5 diff
(99.3 %id)
DA733990   .b 13 to 672 2 to 663 E112X E113X E131D P132H F133S ... capped   662/662
(100 %)
8 diff
(98.8 %id)
DA824714 pericardium .b 13 to 557 2 to 546 exact capped   545/545
(100 %)
0 diff
(100 %id)
DA891904 rectum .b 13 to 572 2 to 561 exact capped   560/560
(100 %)
1 diff
(99.9 %id)
AL702670 human skeletal muscle .b 14 to 586 1 to 573 exact     573/573
(100 %)
1 diff
(99.9 %id)
DA025780   .b 16 to 489 2 to 475 exact capped   474/474
(100 %)
0 diff
(100 %id)
DA043401 bladder .b 16 to 585 2 to 572 L45A V46C D47G F48L G49R ... capped   571/571
(100 %)
3 diff
(99.5 %id)
DA171276 amygdala .b 16 to 582 2 to 568 S3L capped   567/567
(100 %)
1 diff
(99.9 %id)
DA341481 substantia nigra .b 16 to 578 2 to 566 L45A V46C D47G F48L G49R ... capped   565/565
(100 %)
3 diff
(99.5 %id)
DA341499 substantia nigra .b 16 to 514 2 to 500 exact capped   499/499
(100 %)
0 diff
(100 %id)
DA720375   .b 16 to 547 2 to 533 exact capped   532/532
(100 %)
0 diff
(100 %id)
DA754192   .b 16 to 581 2 to 567 exact capped   566/566
(100 %)
0 diff
(100 %id)
BI911524 leukocyte .b 18 to 816 1 to 803 G19A F20S T21P S22P K23R ...     803/803
(100 %)
19 diff
(97.7 %id)
TI_57232866   .b 18 to 816 1 to 803 G19A F20S T21P S22P K23R ...     803/803
(100 %)
19 diff
(97.7 %id)
DA155567 amygdala .b 25 to 588 2 to 565 G74R E112D capped   564/564
(100 %)
4 diff
(99.3 %id)
DA175118 amygdala .b 25 to 582 2 to 559 exact capped   558/558
(100 %)
1 diff
(99.9 %id)
DA180849 amygdala .b 25 to 591 2 to 568 exact capped   567/567
(100 %)
0 diff
(100 %id)
AU117982 whole embryo, mainly head .b 25 to 902 2 to 884 exact capped   883/883
(100 %)
13 diff
(98.6 %id)
DA782080 brain .b 25 to 572 2 to 551 E52G capped   550/554
(99 %)
4 diff
(99.3 %id)
DA889824   .b 25 to 541 2 to 519 E52X A53G V54S A55G R56A ... capped   518/518
(100 %)
1 diff
(99.9 %id)
DA906372   .b 25 to 590 2 to 570 A34G A35L V36R I37* capped   569/577
(98 %)
7 diff
(98.8 %id)
DA961515 Spleen .b 25 to 594 2 to 573 R42Q L43S A44S L45S V46L ... capped   572/572
(100 %)
2 diff
(99.7 %id)
DB152702 thymus .b 25 to 600 2 to 576 exact capped   575/575
(100 %)
2 diff
(99.7 %id)
DB152749 thymus .b 25 to 622 2 to 598 P77X capped   597/597
(100 %)
2 diff
(99.7 %id)
CR611665 Placenta Cot 25-normalized .b 26 to 1486 1 to 1461 exact     1461/1461
(100 %)
0 diff
(100 %id)
BX462549 T cells (Jurkat cell line) .b 26 to 950 1 to 915 A53Z V54W A55R R56D L57W ...     915/919
(99 %)
13 diff
(98.6 %id)
BI756426 brain .b 26 to 759 1 to 740 G19A F20S T21P S22P K23R ...     740/915
(80 %)
16 diff
(98.3 %id)
TI_57220272   .b 26 to 759 37 to 776 G19A F20S T21P S22P K23R ...     740/951
(77 %)
21 diff
(97.8 %id)
DA901065   .b 29 to 663 2 to 647 V54E capped   646/646
(100 %)
13 diff
(98.0 %id)
DA932429 Spleen .b 29 to 593 2 to 566 exact capped   565/565
(100 %)
0 diff
(100 %id)
DA873694 Prostate .b 30 to 589 2 to 561 exact capped   560/560
(100 %)
0 diff
(100 %id)
BX280977 pooled lung and spleen .b 31 to 531 1 to 501 exact     501/501
(100 %)
0 diff
(100 %id)
BI772794 pooled lung and spleen .b 31 to 763 32 to 764 G19C     733/764
(95 %)
7 diff
(99.1 %id)
TI_57178925   .b 31 to 763 32 to 764 G19C     733/764
(95 %)
7 diff
(99.1 %id)
CV815778 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 35 to 777 1 to 744 exact     744/744
(100 %)
2 diff
(99.8 %id)
BC107145 PCR rescued clones .b 37 to 447 1 to 411 exact     411/411
(100 %)
0 diff
(100 %id)
BQ224332 melanotic melanoma, skin .b 39 to 591 24 to 583       560/685
(81 %)
31 diff
(95.5 %id)
CN352727 embryonic stem cells, cell lines H1, H7, andH9 .b 41 to 342 11 to 312       302/312
(96 %)
7 diff
(97.8 %id)
BC107146 PCR rescued clones .b 44 to 447 1 to 404       404/404
(100 %)
0 diff
(100 %id)
BE253334 eye, retinoblastoma .b 47 to 541 1 to 495       495/495
(100 %)
1 diff
(99.8 %id)
AA310150   .b 53 to 482 1 to 430       430/430
(100 %)
2 diff
(99.6 %id)
AA311181   .b 53 to 516 1 to 463       463/463
(100 %)
2 diff
(99.6 %id)
AW962156   .b 54 to 428 1 to 379       376/379
(99 %)
11 diff
(97.1 %id)
AA101291 brain, neuroepithelial cells .b 54 to 476 1 to 424       424/428
(99 %)
30 diff
(93.0 %id)
CN352724 embryonic stem cells, cell lines H1, H7, andH9 .b 55 to 794 1 to 740       740/740
(100 %)
1 diff
(99.9 %id)
CF147300 CNCAP(3)T-225 cell line, Prostate .b 56 to 541 7 to 492       486/492
(98 %)
9 diff
(98.2 %id)
CF147316 CNCAP(3)T-225 cell line, Prostate .b 56 to 698 7 to 648       642/648
(99 %)
7 diff
(99.0 %id)
TI_154179905   .b 56 to 668 69 to 675       607/858
(70 %)
19 diff
(97.8 %id)
TI_154179924   .b 56 to 778 69 to 783       715/915
(78 %)
10 diff
(99.0 %id)
BQ292477 amnion_normal .b 57 to 562 508 to 1       508/521
(97 %)
11 diff
(97.9 %id)
CR612638 Placenta Cot 25-normalized .b 57 to 2046 1 to 1990   tiling clone,   1990/1990
(100 %)
0 diff
(100 %id)
AL553420.
matches multiple genes
placenta, Placenta Cot 25-normalized .b 57 to 1082 1 to 1018     also hits gene kukari 1018/1051
(96 %)
14 diff
(98.7 %id)
BQ227116 melanotic melanoma, skin .b 58 to 749 1 to 706       706/876
(80 %)
24 diff
(97.3 %id)
BF184203 bone marrow, from chronic myelogenous leukemia .b 61 to 609 1 to 549       549/549
(100 %)
3 diff
(99.5 %id)
BU429692 lymph .b 132 to 651 1 to 520       520/520
(100 %)
5 diff
(99.1 %id)
TI_154150812   .b 139 to 760 80 to 707       628/842
(74 %)
14 diff
(98.4 %id)
DB355973 whole embryo, mainly head .b 924 to 1486 571 to 1       571/571
(100 %)
14 diff
(97.6 %id)
AA101250 brain, neuroepithelial cells .b 999 to 1486 489 to 1       489/489
(100 %)
10 diff
(98.0 %id)
DB380606 placenta .b 1667 to 2059 393 to 1       393/393
(100 %)
14 diff
(96.5 %id)
DB379962 placenta .b 1727 to 2191 464 to 1       464/464
(100 %)
8 diff
(98.3 %id)
DB366000   .b 1806 to 2387 577 to 1   tiling clone,   577/577
(100 %)
9 diff
(98.5 %id)
DB374995 placenta .b 1861 to 2387 526 to 1       526/526
(100 %)
12 diff
(97.8 %id)
NR_033684.1   .c 1 to 4339 8 to 4346 exact RefSeq, tiling clone,   4346/4346
(100 %)
0 diff
(100 %id)
DA353113 substantia nigra .c 1 to 555 2 to 556 exact capped   555/555
(100 %)
0 diff
(100 %id)
DA511551 brain .c 16 to 593 2 to 579 exact capped   578/578
(100 %)
1 diff
(99.9 %id)
BF981049 duodenal adenocarcinoma, cell line, small intestine .c 26 to 77 1 to 52       52/52
(100 %)
0 diff
(100 %id)
AL704328 human skeletal muscle .c 27 to 644 1 to 620 S3L E41L R42A L43S A44S ...     620/620
(100 %)
12 diff
(98.1 %id)
DA503851 brain .c 30 to 589 2 to 561 exact capped   560/560
(100 %)
1 diff
(99.9 %id)
DA079532 cerebellum .c 341 to 896 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
AW504404 lymph .c 401 to 960 8 to 567       560/567
(98 %)
6 diff
(99.0 %id)
TI_154160571   .c 401 to 1088 91 to 769       679/704
(96 %)
21 diff
(97.1 %id)
CN352723 embryonic stem cells, DMSO-treated H9 cellline .c 457 to 1217 1 to 761       761/761
(100 %)
0 diff
(100 %id)
CB136365 Liver .c 501 to 1024 1 to 524       524/524
(100 %)
1 diff
(99.9 %id)
BG739732 skin .c 515 to 1304 1 to 790       790/790
(100 %)
24 diff
(97.0 %id)
BQ670952 epidermoid carcinoma, cell line, salivary gland .c 516 to 1419 21 to 930       910/931
(97 %)
6 diff
(99.4 %id)
CV815763 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 536 to 1251 1 to 718       718/718
(100 %)
16 diff
(97.8 %id)
BG615072 embryonal carcinoma, testis .c 540 to 1230 1 to 687       687/893
(76 %)
15 diff
(98.4 %id)
BE787766 large cell carcinoma, lung .c 557 to 1317 1 to 755       755/916
(82 %)
27 diff
(97.1 %id)
BG433667 Kidney .c 588 to 1345 1 to 757       757/787
(96 %)
21 diff
(97.4 %id)
BU602283 mixed (pool of 40 RNAs) .c 618 to 1324 1 to 708       708/787
(89 %)
4 diff
(99.5 %id)
BG259895 bladder, transitional cell papilloma, cell line .c 619 to 1383 15 to 775       761/965
(78 %)
18 diff
(98.2 %id)
CV569558 cornea, eye .c 646 to 1185 1 to 539       539/539
(100 %)
2 diff
(99.7 %id)
DB150910 thymus .c 679 to 1143 2 to 467   capped   466/466
(100 %)
1 diff
(99.8 %id)
BM806516 leiomyosarcoma, uterus .c 701 to 1465 41 to 805       765/814
(93 %)
1 diff
(99.9 %id)
N31661 melanocyte .c 755 to 1245 1 to 494       494/495
(99 %)
5 diff
(99.0 %id)
CB117347 Liver .c 790 to 1068 1 to 279       279/279
(100 %)
1 diff
(99.7 %id)
N31190 melanocyte .c 794 to 1236 1 to 444       444/444
(100 %)
1 diff
(99.8 %id)
AV748704 Pituitary .c 815 to 1268 1 to 448       448/451
(99 %)
13 diff
(97.2 %id)
AW328734 cervix .c 855 to 1377 1 to 524       524/524
(100 %)
3 diff
(99.5 %id)
CB113237 Liver .c 948 to 1373 1 to 426       426/426
(100 %)
3 diff
(99.3 %id)
DA863092 placenta .c 952 to 1474 2 to 525   capped   524/525
(99 %)
3 diff
(99.5 %id)
BX349011 Placenta Cot 25-normalized .c 971 to 1488 1 to 517       517/518
(99 %)
16 diff
(97.0 %id)
BP428988   .c 1005 to 1388 1 to 384       384/384
(100 %)
5 diff
(98.7 %id)
AL553391 placenta, Placenta Cot 25-normalized .c 1017 to 2144 1114 to 1       1114/1143
(97 %)
34 diff
(97.1 %id)
DB538909 hippocampus .c 1152 to 1584 1 to 432     Submitted on the opposite strand 432/432
(100 %)
13 diff
(97.0 %id)
W73048 heart .c 1233 to 1871 1 to 634       634/634
(100 %)
12 diff
(98.2 %id)
BG032240 breast, mammary adenocarcinoma, cell line .c 1504 to 2126 1 to 619       619/620
(99 %)
12 diff
(98.1 %id)
BI913286 brain .c 1598 to 2157 1 to 560   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 560/560
(100 %)
4 diff
(99.3 %id)
TI_57241255   .c 1598 to 2157 32 to 591   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 560/591
(94 %)
6 diff
(99.0 %id)
AI368124   .c 1815 to 2056 242 to 1       242/242
(100 %)
1 diff
(99.6 %id)
CB116627 Liver .c 1856 to 2157 1 to 301       301/301
(100 %)
9 diff
(97.1 %id)
CN352722 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 1897 to 2157 1 to 261   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 261/261
(100 %)
0 diff
(100 %id)
N40816 placenta .c 1897 to 2119 1 to 221   fully sequenced,   221/221
(100 %)
3 diff
(98.7 %id)
W73277 heart .c 1905 to 2485 573 to 1       573/597
(95 %)
10 diff
(98.4 %id)
BX488263   .c 1953 to 2443 1 to 491       491/491
(100 %)
1 diff
(99.8 %id)
BM719686 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 1972 to 2444 1 to 474       474/474
(100 %)
1 diff
(99.8 %id)
CB160724 Liver .c 1984 to 2480 1 to 497       497/497
(100 %)
0 diff
(100 %id)
DA309835 hippocampus .c 2017 to 2450 2 to 434   capped   433/433
(100 %)
3 diff
(99.4 %id)
N22717 melanocyte .c 2036 to 2487 455 to 1       455/457
(99 %)
9 diff
(98.1 %id)
BQ011189 placenta .c 2036 to 2485 468 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 450/450
(100 %)
0 diff
(100 %id)
AI089726 brain, glioblastoma (pooled) .c 2039 to 2486 449 to 1       449/449
(100 %)
1 diff
(99.8 %id)
BI260280 cervical carcinoma cell line, cervix .c 2054 to 2898 1 to 854       854/856
(99 %)
37 diff
(95.7 %id)
N24200 melanocyte .c 2056 to 2485 432 to 1       432/434
(99 %)
5 diff
(98.9 %id)
BU689666 Human Lung Epithelial cells, lung .c 2062 to 2572 529 to 19   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 511/520
(98 %)
0 diff
(100 %id)
AA827903 germinal center B cell .c 2072 to 2578 508 to 2       507/508
(99 %)
0 diff
(100 %id)
AI362823 anaplastic oligodendroglioma, brain .c 2082 to 2485 404 to 1       404/404
(100 %)
0 diff
(100 %id)
N30171 placenta .c 2089 to 2485 407 to 1   fully sequenced,   407/407
(100 %)
6 diff
(98.6 %id)
BE350933 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .c 2095 to 2572 478 to 1       478/478
(100 %)
0 diff
(100 %id)
BI035508 nervous_normal .c 2105 to 2569 1 to 463       463/463
(100 %)
4 diff
(99.2 %id)
AI368039   .c 2118 to 2576 459 to 1       459/459
(100 %)
0 diff
(100 %id)
DA907031   .c 2192 to 2773 2 to 583   capped   582/583
(99 %)
2 diff
(99.7 %id)
AA056977 eye, retina .c 2212 to 2486 1 to 275       275/279
(98 %)
1 diff
(99.7 %id)
AU185803 skin .c 2254 to 2571 1 to 318       318/318
(100 %)
5 diff
(98.5 %id)
DB514312 testis .c 2255 to 2673 420 to 3       418/420
(99 %)
0 diff
(100 %id)
BP387942 pancreatic islet .c 2255 to 2456 203 to 1       203/203
(100 %)
1 diff
(99.6 %id)
W69647 heart .c 2255 to 2688 1 to 437     Submitted on the opposite strand 437/437
(100 %)
5 diff
(98.9 %id)
BQ188995.
matches multiple genes
eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 2257 to 2485 42 to 270   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base), also hits gene beybaw 229/270
(84 %)
0 diff
(100 %id)
AI433500 lymph node, lymphoma, follicular mixed small and largecell .c 2258 to 2579 322 to 1       322/378
(85 %)
0 diff
(100 %id)
BM996389 lung, Metastatic Chondrosarcoma .c 2258 to 2572 333 to 19   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 315/338
(93 %)
1 diff
(99.8 %id)
D20620   .c 2258 to 2322 65 to 1       65/66
(98 %)
0 diff
(100 %id)
BM694091 eye, RPE and Choroid .c 2258 to 2572 29 to 343   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 315/343
(91 %)
0 diff
(100 %id)
BM704659 eye, RPE and Choroid .c 2258 to 2572 29 to 343   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 315/343
(91 %)
0 diff
(100 %id)
AW059627   .c 2260 to 2322 1 to 63       63/63
(100 %)
1 diff
(98.5 %id)
DB571577.
matches multiple genes
hypothalamus .c 2260 to 2737 478 to 1     also hits gene SRSF9 478/478
(100 %)
0 diff
(100 %id)
AU185180 skin .c 2261 to 2557 1 to 296       296/296
(100 %)
1 diff
(99.7 %id)
DB540656.
matches multiple genes
hippocampus .c 2261 to 2750 493 to 3     also hits gene SRSF9 491/494
(99 %)
0 diff
(100 %id)
DB541230.
matches multiple genes
hippocampus .c 2261 to 2729 468 to 1     also hits gene SRSF9 468/469
(99 %)
2 diff
(99.6 %id)
DB550793.
matches multiple genes
hippocampus .c 2261 to 2750 494 to 4     also hits gene SRSF9 491/495
(99 %)
0 diff
(100 %id)
BU679922 lung, Primary Lung Epithelial Cells .c 2261 to 2572 329 to 18   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 312/320
(97 %)
0 diff
(100 %id)
DB523175.
matches multiple genes
testis .c 2262 to 2724 462 to 1     also hits gene SRSF9 462/464
(99 %)
6 diff
(98.8 %id)
CN479148 Human Lung Epithelial cells, lung .c 2267 to 2572 323 to 17   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 307/316
(97 %)
1 diff
(99.7 %id)
AA878469 carcinoid, lung .c 2271 to 2573 303 to 1       303/303
(100 %)
0 diff
(100 %id)
AA931906 carcinoid, lung .c 2278 to 2487 210 to 1       210/210
(100 %)
0 diff
(100 %id)
BF446815 carcinoid, lung .c 2283 to 2573 293 to 1       293/293
(100 %)
1 diff
(99.7 %id)
AI302689 carcinoid, lung .c 2295 to 2569 275 to 1       275/275
(100 %)
0 diff
(100 %id)
BM929804.
matches multiple genes
eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 2296 to 2485 1 to 190   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base), also hits gene beybaw 190/190
(100 %)
0 diff
(100 %id)
BF816282 colon_ins .c 2302 to 2655 1 to 354       354/354
(100 %)
12 diff
(96.7 %id)
BF816279 colon_ins .c 2303 to 2637 6 to 340       335/340
(98 %)
10 diff
(97.1 %id)
BE348752 carcinoid, lung .c 2356 to 2569 215 to 1       215/215
(100 %)
1 diff
(99.6 %id)
BF431116 Kidney .c 2398 to 2786 389 to 1       389/389
(100 %)
0 diff
(100 %id)
CA392760 eye, RPE/choroid .c 2404 to 2572 1 to 168   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 168/168
(100 %)
3 diff
(98.3 %id)
BM924976 pooled lung and spleen .c 2449 to 3501 5 to 1063       1059/1065
(99 %)
29 diff
(97.3 %id)
CB241844 Human Lung Epithelial cells, lung .c 2471 to 2572 120 to 19   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 102/113
(90 %)
0 diff
(100 %id)
BM728408 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 2471 to 3152 27 to 710       684/710
(96 %)
6 diff
(99.2 %id)
TI_149273376   .c 2475 to 3060 682 to 97   AAA   586/1028
(57 %)
0 diff
(100 %id)
BU675771 lung, Primary Lung Epithelial Cells .c 2484 to 3060 603 to 27   AAA   577/585
(98 %)
0 diff
(100 %id)
CN352725 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 2518 to 3221 9 to 712       704/712
(98 %)
6 diff
(99.2 %id)
AA447827 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2519 to 2698 1 to 180   fully sequenced,   180/180
(100 %)
0 diff
(100 %id)
AI384121 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2572 to 3002 431 to 1       431/431
(100 %)
0 diff
(100 %id)
W63703 parathyroid gland, parathyroid tumor .c 2617 to 3204 1 to 579       579/654
(88 %)
12 diff
(98.2 %id)
AA349293 brain .c 2634 to 2987 1 to 354       354/354
(100 %)
3 diff
(99.2 %id)
Z45249 brain, total brain .c 2634 to 2931 1 to 298       298/298
(100 %)
2 diff
(99.4 %id)
AA351277 brain .c 2635 to 3049 1 to 415       415/415
(100 %)
4 diff
(99.1 %id)
AA447677 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2668 to 3002 335 to 1   fully sequenced,   335/335
(100 %)
0 diff
(100 %id)
BP432190   .c 2668 to 3039 1 to 373       373/373
(100 %)
1 diff
(99.8 %id)
BG750277 eye, normal pigmented retinal epithelium .c 2747 to 3310 253 to 816       564/816
(69 %)
8 diff
(99.1 %id)
BM545374 brain, hippocampus .c 2754 to 3670 26 to 951       926/1080
(85 %)
45 diff
(95.9 %id)
BQ050519 leiomyosarcoma, uterus .c 2765 to 3668 1 to 908       908/1014
(89 %)
11 diff
(99.0 %id)
BQ268121 insulinoma, Pancreas .c 2769 to 3281 1 to 513       513/513
(100 %)
3 diff
(99.5 %id)
BG179413 adenocarcinoma, cell line, Prostate .c 2775 to 3576 1 to 802       802/1130
(70 %)
12 diff
(99.0 %id)
BG109225 Bone, osteosarcoma, cell line .c 2785 to 3413 1 to 630       630/630
(100 %)
1 diff
(99.9 %id)
BX324312 Neuroblastoma Cot 25-normalized .c 2790 to 3872 1 to 1084       1084/1120
(96 %)
23 diff
(98.0 %id)
BX332349 Neuroblastoma Cot 25-normalized .c 2790 to 3408 1 to 619       619/619
(100 %)
12 diff
(98.1 %id)
AA058403 colon, tumor .c 2800 to 3183 1 to 386       386/386
(100 %)
2 diff
(99.5 %id)
N51148 multiple sclerosis lesions .c 2810 to 3096 1 to 287       287/287
(100 %)
0 diff
(100 %id)
AA043872 uterus .c 2827 to 3244 1 to 420     Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 420/420
(100 %)
3 diff
(99.3 %id)
BM715552 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 2833 to 3523 1 to 691     Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 691/691
(100 %)
0 diff
(100 %id)
TI_151777037   .c 2833 to 3613 107 to 894       788/1396
(56 %)
46 diff
(96.8 %id)
Z43612 brain, total brain .c 2842 to 3181 1 to 340       340/340
(100 %)
2 diff
(99.5 %id)
T08875   .c 2842 to 3230 1 to 390       390/390
(100 %)
2 diff
(99.5 %id)
BG179316 adenocarcinoma, cell line, Prostate .c 2901 to 3658 1 to 757       757/904
(83 %)
15 diff
(98.4 %id)
AA043062 uterus .c 2918 to 3241 1 to 331       331/359
(92 %)
9 diff
(97.5 %id)
BX404700 thymus .c 2986 to 4016 23 to 1060       1038/1151
(90 %)
19 diff
(98.4 %id)
BX404851 thymus .c 2986 to 3951 23 to 991   AAA   969/1113
(87 %)
9 diff
(99.2 %id)
BX414991 thymus .c 2986 to 3904 23 to 940       918/943
(97 %)
27 diff
(97.2 %id)
Z43203 brain, total brain .c 3006 to 3354 1 to 349       349/349
(100 %)
3 diff
(99.2 %id)
BM759710 stomach .c 3006 to 3588 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
BM757851 stomach .c 3006 to 3470 1 to 466       466/466
(100 %)
4 diff
(99.2 %id)
BM835924 stomach .c 3006 to 3451 1 to 446       446/446
(100 %)
2 diff
(99.6 %id)
DB061918 testis .c 3024 to 3572 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
BM794265 Ascites, stomach .c 3035 to 3674 1 to 640       640/640
(100 %)
0 diff
(100 %id)
DR423483 eye, Pterygium .c 3067 to 3831 1 to 766       766/766
(100 %)
15 diff
(98.1 %id)
BP432160   .c 3117 to 3489 1 to 376       376/376
(100 %)
8 diff
(97.9 %id)
AW849036 colon .c 3146 to 3513 1 to 368       368/368
(100 %)
7 diff
(98.1 %id)
BG741056 skin .c 3294 to 4005 1 to 711       711/803
(88 %)
5 diff
(99.4 %id)
CR994650 T-Lymphocytes .c 3338 to 4179 1 to 845       845/850
(99 %)
6 diff
(99.3 %id)
N47892 multiple sclerosis lesions .c 3379 to 3622 244 to 1       244/245
(99 %)
5 diff
(98.0 %id)
BF741938 bocio_tumor .c 3421 to 3818 12 to 412       401/412
(97 %)
6 diff
(98.6 %id)
AA826673 Kidney, kidney tumor .c 3512 to 3979 468 to 1       468/468
(100 %)
0 diff
(100 %id)
CA439902 lung, Lung Focal Fibrosis .c 3532 to 4018 505 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 487/521
(93 %)
1 diff
(99.9 %id)
BM726688 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 3540 to 4137 1 to 603       603/603
(100 %)
4 diff
(99.4 %id)
H75316 liver and spleen .c 3556 to 3916 1 to 366       366/373
(98 %)
7 diff
(98.2 %id)
TI_149289043   .c 3577 to 4332 849 to 100   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 750/954
(78 %)
17 diff
(98.3 %id)
W15174 lung .c 3581 to 3914 1 to 337   fully sequenced,   337/337
(100 %)
3 diff
(99.2 %id)
BU616130 Bone, Subchondral Bone .c 3601 to 4332 747 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 729/729
(100 %)
3 diff
(99.6 %id)
CD369726 Alveolar Macrophage, lung .c 3604 to 4332 736 to 12   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 725/726
(99 %)
7 diff
(99.1 %id)
CA748593 Alveolar Macrophage, lung .c 3621 to 4332 727 to 12   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 716/716
(100 %)
3 diff
(99.6 %id)
CB241074 Human Lung Epithelial cells, lung .c 3622 to 4325 723 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 705/709
(99 %)
1 diff
(99.9 %id)
BU742189 eye, fetal eye .c 3622 to 4325 727 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 709/709
(100 %)
2 diff
(99.8 %id)
BM826284 Ascites, stomach .c 3641 to 4229 1 to 589       589/591
(99 %)
1 diff
(99.9 %id)
AA195552 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 3656 to 3980 1 to 329   fully sequenced,   329/329
(100 %)
3 diff
(99.1 %id)
AA193488 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 3656 to 4117 1 to 473       473/474
(99 %)
13 diff
(97.3 %id)
BM674012 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 3700 to 4332 646 to 12   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 635/637
(99 %)
6 diff
(99.1 %id)
BM824607 Ascites, stomach .c 3715 to 4310 1 to 598       598/598
(100 %)
3 diff
(99.5 %id)
CB160568 Liver .c 3718 to 4280 1 to 563       563/563
(100 %)
0 diff
(100 %id)
TI_151727500   .c 3742 to 4332 703 to 112   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 592/708
(83 %)
6 diff
(99.2 %id)
BQ016233 lung, Metastatic Chondrosarcoma .c 3745 to 4332 602 to 12   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 591/591
(100 %)
5 diff
(99.2 %id)
BM723538 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 3748 to 4325 1 to 578       578/578
(100 %)
2 diff
(99.7 %id)
AA541697 normal prostate, Prostate .c 3764 to 4325 562 to 1       562/562
(100 %)
3 diff
(99.5 %id)
AI659706 Prostate .c 3800 to 4332 535 to 1       535/535
(100 %)
2 diff
(99.7 %id)
N57923 liver and spleen .c 3827 to 4326 501 to 1       501/501
(100 %)
16 diff
(96.9 %id)
BU681517 lung .c 3832 to 4332 514 to 12   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 503/503
(100 %)
2 diff
(99.7 %id)
AA044427 uterus .c 3838 to 4328 493 to 1       493/493
(100 %)
4 diff
(99.2 %id)
AI090163 uterus .c 3852 to 4325 476 to 1       476/476
(100 %)
5 diff
(99.0 %id)
AI689724 carcinoid, lung .c 3852 to 4339 490 to 3       488/490
(99 %)
0 diff
(100 %id)
BE219636 carcinoid, lung .c 3852 to 4335 487 to 2       486/487
(99 %)
0 diff
(100 %id)
BQ267867 insulinoma, Pancreas .c 3852 to 4335 502 to 17       486/502
(96 %)
0 diff
(100 %id)
AW772419 Kidney .c 3853 to 4332 482 to 1       482/482
(100 %)
1 diff
(99.8 %id)
BF439134 pooled .c 3853 to 4335 486 to 4       483/486
(99 %)
0 diff
(100 %id)
AI277123 adenocarcinoma, colon .c 3861 to 4268 418 to 9       410/418
(98 %)
7 diff
(98.4 %id)
AI826988 normal prostate, Prostate .c 3874 to 4325 454 to 1       454/454
(100 %)
2 diff
(99.6 %id)
AA044051 uterus .c 3878 to 4332 470 to 14   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 457/457
(100 %)
1 diff
(99.8 %id)
AI796093 Kidney .c 3881 to 4334 456 to 1       456/456
(100 %)
1 diff
(99.8 %id)
N78667 lung .c 3886 to 4332 451 to 1   fully sequenced,   451/451
(100 %)
4 diff
(99.2 %id)
AA412678   .c 3889 to 4335 449 to 1       449/449
(100 %)
2 diff
(99.6 %id)
AA860294 parathyroid gland, parathyroid tumor .c 3891 to 4335 446 to 4       443/446
(99 %)
0 diff
(100 %id)
AI016612   .c 3891 to 4335 452 to 6       447/452
(98 %)
0 diff
(100 %id)
BM992290 Bone, Subchondral Bone .c 3908 to 4332 445 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 427/427
(100 %)
1 diff
(99.8 %id)
AI498946 anaplastic oligodendroglioma, brain .c 3915 to 4332 420 to 1       420/420
(100 %)
1 diff
(99.8 %id)
AI096597 brain, glioblastoma (pooled) .c 3918 to 4333 418 to 1       418/418
(100 %)
1 diff
(99.8 %id)
AI298867 carcinoid, lung .c 3921 to 4335 418 to 2       417/418
(99 %)
0 diff
(100 %id)
AI015664 Kidney .c 3922 to 4332 413 to 1       413/413
(100 %)
1 diff
(99.8 %id)
AA058351 colon, tumor .c 3925 to 4339 419 to 1       419/419
(100 %)
3 diff
(99.3 %id)
BF740001 Kidney .c 3929 to 4333 407 to 1       407/407
(100 %)
1 diff
(99.8 %id)
AI147759 brain, glioblastoma (pooled) .c 3930 to 4335 408 to 1       408/408
(100 %)
1 diff
(99.8 %id)
AI492328 Kidney .c 3936 to 4333 400 to 1       400/400
(100 %)
1 diff
(99.8 %id)
AI962573 pooled germ cell tumors .c 3941 to 4332 403 to 12   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 392/392
(100 %)
0 diff
(100 %id)
AA195553 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 3950 to 4325 380 to 1   fully sequenced,   380/380
(100 %)
2 diff
(99.5 %id)
AI913344 Kidney .c 3958 to 4332 377 to 1       377/377
(100 %)
1 diff
(99.8 %id)
AI033527 liver and spleen .c 3965 to 4325 364 to 1       364/364
(100 %)
6 diff
(98.4 %id)
AI034170 liver and spleen .c 3968 to 4325 358 to 1       358/358
(100 %)
0 diff
(100 %id)
AI244035 Kidney .c 3985 to 4332 349 to 1       349/349
(100 %)
1 diff
(99.8 %id)
Z39282 brain, total brain .c 3989 to 4325 337 to 1       337/337
(100 %)
0 diff
(100 %id)
AI457482 colon, moderately-differentiated adenocarcinoma .c 3992 to 4321 382 to 54   AAA   329/342
(96 %)
0 diff
(100 %id)
AA858100 adenocarcinoma, colon .c 4003 to 4332 342 to 13   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 330/330
(100 %)
0 diff
(100 %id)
AA970916 2 pooled tumors (clear cell type), Kidney .c 4003 to 4335 334 to 2       333/334
(99 %)
0 diff
(100 %id)
AA679680   .c 4009 to 4332 324 to 1       324/324
(100 %)
1 diff
(99.7 %id)
CB045984 2 pooled tumors (clear cell type), Kidney .c 4011 to 4325 10 to 324   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 315/324
(97 %)
6 diff
(98.2 %id)
BF740027 Kidney .c 4018 to 4335 320 to 1       320/320
(100 %)
2 diff
(99.4 %id)
F02936 brain, total brain .c 4020 to 4325 306 to 1       306/306
(100 %)
0 diff
(100 %id)
AI681943 carcinoid, lung .c 4024 to 4329 306 to 1       306/306
(100 %)
3 diff
(99.1 %id)
AI244853 Kidney .c 4043 to 4332 290 to 1       290/290
(100 %)
0 diff
(100 %id)
AW207319   .c 4049 to 4332 294 to 11   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 284/284
(100 %)
0 diff
(100 %id)
BI494736 cochlea, ear .c 4050 to 4333 8 to 291       284/308
(92 %)
8 diff
(97.5 %id)
BI494483 cochlea, ear .c 4050 to 4325 8 to 283   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 276/283
(97 %)
6 diff
(97.9 %id)
F04147 brain, total brain .c 4056 to 4325 270 to 1       270/270
(100 %)
1 diff
(99.7 %id)
BI494482 cochlea, ear .c 4089 to 4332 258 to 15   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 244/244
(100 %)
0 diff
(100 %id)
AI201751 Prostate .c 4099 to 4332 234 to 1       234/234
(100 %)
0 diff
(100 %id)
AI420343 Prostate .c 4099 to 4332 244 to 11   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 234/234
(100 %)
0 diff
(100 %id)
AA583056 colon, colon tumor RER+ .c 4108 to 4332 225 to 1       225/225
(100 %)
0 diff
(100 %id)
AI768293 pooled .c 4116 to 4325 227 to 18       210/227
(92 %)
0 diff
(100 %id)
AL353979.
matches multiple genes
melanoma (MeWo cell line) .c 4119 to 4279 161 to 1     also hits gene keydubu 161/161
(100 %)
0 diff
(100 %id)
AA861540 parathyroid gland, parathyroid tumor .c 4122 to 4335 217 to 4       214/217
(98 %)
0 diff
(100 %id)
T33738 brain .c 4124 to 4318 202 to 8       195/202
(96 %)
0 diff
(100 %id)
AW075600 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .c 4138 to 4335 204 to 7       198/204
(97 %)
0 diff
(100 %id)
N90603 parathyroid gland, parathyroid tumor .c 4157 to 4332 176 to 1       176/176
(100 %)
0 diff
(100 %id)
FN148995 breast carcinoma .c 4193 to 4294 1 to 102       102/102
(100 %)
0 diff
(100 %id)
GD144585   .c 4277 to 4335 1 to 59       59/69
(85 %)
3 diff
(95.7 %id)
AK312009 brain .d 1 to 366 2 to 367 exact     367/367
(100 %)
0 diff
(100 %id)
DA520160 brain .d 1 to 559 2 to 560 exact tiling clone, capped   559/565
(98 %)
1 diff
(99.9 %id)
NM_004373.2   .d 11 to 558 1 to 548 exact RefSeq,   548/548
(100 %)
2 diff
(99.7 %id)
BM766934 stomach .d 12 to 526 1 to 515 exact     515/515
(100 %)
1 diff
(99.9 %id)
AW160912 brain, frontal lobe .d 15 to 555 1 to 540 exact     540/540
(100 %)
4 diff
(99.3 %id)
CB963577 Blood vessels - aorta, basilar and artery .d 15 to 558 1 to 544 exact     544/545
(99 %)
6 diff
(98.9 %id)
BG705963 brain, hypothalamus .d 17 to 558 1 to 541 exact AAA   541/541
(100 %)
3 diff
(99.5 %id)
BC107861 Testis, embryonal carcinoma .d 19 to 558 1 to 540 exact tiling clone, AAA   540/540
(100 %)
2 diff
(99.7 %id)
BQ278281 mixed (pool of 40 RNAs) .d 20 to 558 1 to 539 exact     539/543
(99 %)
3 diff
(99.5 %id)
BU533843 mixed (pool of 40 RNAs) .d 20 to 555 1 to 536 exact     536/539
(99 %)
2 diff
(99.7 %id)
BU540257 mixed (pool of 40 RNAs) .d 20 to 556 1 to 537 exact     537/542
(99 %)
2 diff
(99.7 %id)
DA738139   .d 20 to 558 2 to 540 exact fully sequenced, capped   539/539
(100 %)
4 diff
(99.3 %id)
BF680631 Prostate .d 22 to 531 1 to 510 exact     510/510
(100 %)
1 diff
(99.9 %id)
BG567148 Liver .d 22 to 552 1 to 531 exact AAA   531/531
(100 %)
1 diff
(99.9 %id)
BP203833 coronary artery .d 23 to 558 1 to 536 V4A S53G AAA   536/536
(100 %)
5 diff
(99.1 %id)
BG715559 brain, hypothalamus .d 23 to 552 1 to 530 R15Q AAA   530/530
(100 %)
4 diff
(99.3 %id)
BP300155   .d 23 to 558 1 to 535 exact AAA   535/535
(100 %)
3 diff
(99.5 %id)
BM843241 stomach .d 23 to 217 1 to 195       195/195
(100 %)
0 diff
(100 %id)
BU860907 mixed (pool of 40 RNAs) .d 25 to 558 1 to 534 exact     534/538
(99 %)
4 diff
(99.3 %id)
CD242130 Blood vessels - aorta, basilar and artery .d 25 to 555 1 to 531 exact     531/534
(99 %)
4 diff
(99.3 %id)
BM694231.
matches multiple genes
eye, RPE and Choroid .d 25 to 384 1 to 360 exact   Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base), also hits gene COX6A1P2 360/360
(100 %)
0 diff
(100 %id)
BC070186 Brain, glioblastoma .d 27 to 557 1 to 531 exact available from MGC, AAA   531/531
(100 %)
1 diff
(99.9 %id)
BF948725 nervous_normal .d 27 to 429 397 to 1 H76I L77S R78A I79S R80G ...     397/410
(96 %)
10 diff
(97.6 %id)
BX110016 brain, glioblastoma (pooled) .d 27 to 543 1 to 518 exact     518/518
(100 %)
3 diff
(99.5 %id)
BM764738 Ascites, stomach .d 27 to 551 1 to 525 exact     525/525
(100 %)
0 diff
(100 %id)
BM832749 stomach .d 27 to 524 1 to 498 exact     498/498
(100 %)
0 diff
(100 %id)
BM832902 stomach .d 27 to 524 1 to 498 exact     498/498
(100 %)
0 diff
(100 %id)
BM833145 stomach .d 27 to 555 1 to 529 exact     529/530
(99 %)
1 diff
(99.9 %id)
BM830848 stomach .d 27 to 565 1 to 539 exact     539/539
(100 %)
1 diff
(99.9 %id)
BM839074 stomach .d 27 to 537 1 to 510 exact     510/510
(100 %)
1 diff
(99.9 %id)
BU674781 lung, Primary Lung Epithelial Cells .d 27 to 566 558 to 19 exact AAA   540/547
(98 %)
5 diff
(99.1 %id)
DA140693 alzheimer cortex .d 28 to 559 2 to 533 exact capped   532/536
(99 %)
1 diff
(99.9 %id)
BP208026 cerebellum .d 28 to 571 1 to 543 V4A     543/547
(99 %)
4 diff
(99.3 %id)
BP210293 cerebellum .d 28 to 566 1 to 539 exact AAA   539/539
(100 %)
2 diff
(99.7 %id)
BP227845   .d 28 to 558 1 to 530 exact AAA   530/530
(100 %)
2 diff
(99.7 %id)
EL952960 eyeball .d 28 to 558 1 to 531 exact AAA   531/531
(100 %)
3 diff
(99.5 %id)
FN116825 breast carcinoma .d 28 to 131 112 to 4     Submitted on the opposite strand 109/118
(92 %)
0 diff
(100 %id)
BP261977 small intestine .d 28 to 558 1 to 531 E65G AAA   531/531
(100 %)
3 diff
(99.5 %id)
BG618222 Liver .d 28 to 560 1 to 533 exact AAA   533/533
(100 %)
1 diff
(99.9 %id)
BP272751   .d 28 to 558 1 to 531 S8L V9X S10F G21W AAA   531/531
(100 %)
4 diff
(99.3 %id)
CB139414 Liver .d 28 to 341 1 to 314       314/314
(100 %)
0 diff
(100 %id)
BP316100 pericardium .d 28 to 560 1 to 532 exact AAA   532/532
(100 %)
2 diff
(99.7 %id)
BP316558 pericardium .d 28 to 559 1 to 532 exact     532/535
(99 %)
1 diff
(99.9 %id)
BM789153 stomach .d 28 to 555 1 to 528 exact     528/530
(99 %)
1 diff
(99.9 %id)
BM773513 stomach .d 28 to 558 1 to 531 exact AAA   531/531
(100 %)
1 diff
(99.9 %id)
BM850286 stomach .d 28 to 525 1 to 498 exact     498/498
(100 %)
0 diff
(100 %id)
BM850318 stomach .d 28 to 470 1 to 443 exact     443/443
(100 %)
0 diff
(100 %id)
BM855200 stomach .d 28 to 377 1 to 350 exact     350/350
(100 %)
0 diff
(100 %id)
BM855370 stomach .d 28 to 239 1 to 212       212/212
(100 %)
0 diff
(100 %id)
BM821261 stomach .d 28 to 405 1 to 378 exact     378/378
(100 %)
0 diff
(100 %id)
BM829911 stomach .d 28 to 555 1 to 528 exact     528/530
(99 %)
1 diff
(99.9 %id)
BM829962 stomach .d 28 to 559 1 to 532 exact     532/532
(100 %)
1 diff
(99.9 %id)
BM830106 stomach .d 28 to 536 1 to 509 exact     509/509
(100 %)
0 diff
(100 %id)
BM821370 stomach .d 28 to 538 1 to 509 V4L G5V V6C S7L S8G ...     509/509
(100 %)
3 diff
(99.5 %id)
DB111843 thymus .d 28 to 559 2 to 533 exact capped   532/532
(100 %)
3 diff
(99.5 %id)
DB258447 uterus .d 28 to 558 2 to 532 exact capped, AAA   531/531
(100 %)
1 diff
(99.9 %id)
X15341 Liver .d 28 to 555 14 to 541 A2V     528/531
(99 %)
7 diff
(98.7 %id)
DA312253 hippocampus .d 29 to 559 2 to 532 exact capped   531/531
(100 %)
1 diff
(99.9 %id)
DB065075 testis .d 29 to 558 2 to 531 exact capped, AAA   530/530
(100 %)
0 diff
(100 %id)
BP227063   .d 30 to 558 1 to 529 exact AAA   529/529
(100 %)
4 diff
(99.3 %id)
AI816091 brain, frontal lobe .d 30 to 313 1 to 284   fully sequenced,   284/284
(100 %)
0 diff
(100 %id)
BF968143 adrenal cortex carcinoma, cell line, adrenal gland .d 30 to 558 1 to 528 exact AAA   528/528
(100 %)
2 diff
(99.7 %id)
CB111641 Liver .d 30 to 525 1 to 496 exact     496/496
(100 %)
0 diff
(100 %id)
BP328374 rectum .d 30 to 558 1 to 529 N100D AAA   529/529
(100 %)
5 diff
(99.1 %id)
BM738815 Ascites, stomach .d 30 to 559 1 to 530 exact     530/535
(99 %)
2 diff
(99.7 %id)
BM792400 Ascites, stomach .d 31 to 552 1 to 522 exact     522/522
(100 %)
1 diff
(99.9 %id)
BQ639853 eye, retina .d 32 to 559 1 to 528 exact     528/530
(99 %)
2 diff
(99.7 %id)
BI770735 pooled lung and spleen .d 32 to 558 1 to 526 exact AAA   526/526
(100 %)
4 diff
(99.3 %id)
CB132924 Liver .d 32 to 566 1 to 535 exact AAA   535/535
(100 %)
0 diff
(100 %id)
BM706649 eye, optic nerve .d 32 to 566 1 to 536 M37X W38V K39E T40D L41S ... fully sequenced, AAA   536/536
(100 %)
6 diff
(98.9 %id)
BM686337 eye, eye anterior segment .d 32 to 566 1 to 535 exact AAA   535/535
(100 %)
5 diff
(99.1 %id)
CN431737 embryonic stem cells, DMSO-treated H9 cellline .d 33 to 395 1 to 363 exact     363/363
(100 %)
0 diff
(100 %id)
AI421088 brain, glioblastoma (pooled) .d 33 to 558 547 to 22 exact AAA   526/526
(100 %)
1 diff
(99.9 %id)
BE910329 epithelioid carcinoma, Pancreas .d 33 to 555 1 to 523 exact     523/524
(99 %)
2 diff
(99.7 %id)
BI764992 pooled colon, kidney, stomach .d 33 to 565 1 to 533 exact     533/534
(99 %)
2 diff
(99.7 %id)
BQ218159 epithelioid carcinoma, Pancreas .d 33 to 558 1 to 526 exact AAA   526/526
(100 %)
1 diff
(99.9 %id)
BP330384 rectum .d 33 to 558 1 to 525 exact AAA   525/525
(100 %)
2 diff
(99.7 %id)
AJ713916 bone marrow .d 34 to 404 7 to 377 exact     371/377
(98 %)
0 diff
(100 %id)
CD618607.
matches multiple genes
  .d 34 to 498 468 to 6 T104L G105A Y106T E107K D108M ...   also hits gene COX6A1P2 463/475
(97 %)
0 diff
(100 %id)
CD618609.
matches multiple genes
  .d 34 to 498 471 to 9 T104L G105A Y106T E107K D108M ...   also hits gene COX6A1P2 463/478
(96 %)
0 diff
(100 %id)
CD618611   .d 34 to 489 469 to 14 exact     456/476
(95 %)
0 diff
(100 %id)
AA046818 heart .d 34 to 555 1 to 518 E31X E32R G33A S34Q A35L ... fully sequenced,   518/518
(100 %)
6 diff
(98.9 %id)
BF683428 leiomyosarcoma cell line, uterus .d 34 to 558 1 to 523 exact AAA   523/523
(100 %)
4 diff
(99.3 %id)
BI835685 pooled pancreas and spleen .d 34 to 558 1 to 524 exact AAA   524/524
(100 %)
2 diff
(99.7 %id)
BQ228404 epithelioid carcinoma, Pancreas .d 34 to 558 567 to 43 exact AAA Submitted on the opposite strand 525/830
(63 %)
1 diff
(99.9 %id)
CF128682 Chondrosarcoma Lung Metastasis cell lines, lung .d 34 to 552 1 to 519 exact     519/519
(100 %)
1 diff
(99.9 %id)
CF127365 Chondrosarcoma Lung Metastasis cell lines, lung .d 34 to 558 1 to 523 R11L L12C L13W G14V R15G ... AAA   523/523
(100 %)
3 diff
(99.5 %id)
CB159654 Liver .d 34 to 558 1 to 525 exact AAA   525/525
(100 %)
0 diff
(100 %id)
BC007723 Uterus, leiomyosarcoma .d 35 to 558 1 to 524 exact available from MGC, AAA   524/524
(100 %)
1 diff
(99.9 %id)
CD618612.
matches multiple genes
  .d 35 to 259 234 to 10     also hits gene COX6A1P2 225/241
(93 %)
0 diff
(100 %id)
BF344824 brain, glioblastoma with EGFR amplification .d 35 to 96 1 to 62       62/62
(100 %)
0 diff
(100 %id)
BI754671 brain .d 37 to 560 1 to 522 exact AAA   522/522
(100 %)
2 diff
(99.7 %id)
AV713464   .d 38 to 567 1 to 530   AAA   530/530
(100 %)
3 diff
(99.5 %id)
BE908162 epithelioid carcinoma, Pancreas .d 38 to 566 1 to 528       528/528
(100 %)
2 diff
(99.7 %id)
BM919878 pooled pancreas and spleen .d 38 to 560 1 to 523   AAA   523/523
(100 %)
0 diff
(100 %id)
CB160135 Liver .d 38 to 525 1 to 488       488/488
(100 %)
0 diff
(100 %id)
CN431742 embryonic stem cells, DMSO-treated H9 cellline .d 39 to 558 1 to 520   AAA   520/520
(100 %)
0 diff
(100 %id)
CN431748 embryonic stem cells, DMSO-treated H9 cellline .d 39 to 558 1 to 520   AAA   520/520
(100 %)
4 diff
(99.3 %id)
AA687516 normal prostate, Prostate .d 39 to 554 1 to 513   fully sequenced,   513/513
(100 %)
8 diff
(98.5 %id)
BI766064 pooled lung and spleen .d 39 to 558 1 to 519   AAA   519/519
(100 %)
1 diff
(99.9 %id)
BE539883 cervix .d 40 to 552 1 to 512       512/512
(100 %)
3 diff
(99.5 %id)
BQ877344 melanotic melanoma, cell line, skin .d 40 to 570 1 to 531   AAA   531/531
(100 %)
1 diff
(99.9 %id)
BM738505 Ascites, stomach .d 40 to 558 1 to 517   AAA   517/517
(100 %)
4 diff
(99.3 %id)
BM043972 carcinoma, cell line, Prostate .d 41 to 558 1 to 516   AAA   516/516
(100 %)
4 diff
(99.3 %id)
BU838205 melanotic melanoma, cell line, skin .d 41 to 558 4 to 521       518/525
(98 %)
8 diff
(98.5 %id)
CF130544 Chondrosarcoma Lung Metastasis cell lines, lung .d 41 to 558 1 to 517   AAA   517/517
(100 %)
2 diff
(99.7 %id)
BM688900 eye, eye anterior segment .d 41 to 538 4 to 501       498/501
(99 %)
6 diff
(98.9 %id)
BY800182 eye .d 42 to 559 1 to 518       518/518
(100 %)
0 diff
(100 %id)
AV728697 hypothalamus .d 42 to 558 1 to 517   AAA   517/517
(100 %)
2 diff
(99.7 %id)
AA593799 breast, breast tumor .d 42 to 559 518 to 1       518/518
(100 %)
3 diff
(99.5 %id)
AI220514   .d 42 to 559 521 to 4       518/521
(99 %)
0 diff
(100 %id)
BI838425 pooled pancreas and spleen .d 42 to 558 1 to 516   AAA   516/516
(100 %)
2 diff
(99.7 %id)
BI835175 pooled pancreas and spleen .d 42 to 558 1 to 518   AAA   518/518
(100 %)
5 diff
(99.1 %id)
BU192492 epithelioid carcinoma, Pancreas .d 42 to 558 1 to 517   AAA   517/517
(100 %)
1 diff
(99.9 %id)
BU164643 epithelioid carcinoma, Pancreas .d 42 to 558 1 to 517   AAA   517/517
(100 %)
1 diff
(99.9 %id)
CD108950 brain, Pituitary .d 42 to 558 1 to 517       517/522
(99 %)
1 diff
(99.9 %id)
CF130000 Chondrosarcoma Lung Metastasis cell lines, lung .d 42 to 558 1 to 516   AAA   516/516
(100 %)
2 diff
(99.7 %id)
CF129722 Chondrosarcoma Lung Metastasis cell lines, lung .d 42 to 558 1 to 517   AAA   517/517
(100 %)
1 diff
(99.9 %id)
BU677195 lung, Primary Lung Epithelial Cells .d 42 to 570 547 to 19   AAA   529/537
(98 %)
0 diff
(100 %id)
AA444149   .d 43 to 555 1 to 513   fully sequenced,   513/513
(100 %)
6 diff
(98.9 %id)
BF971154 adrenal cortex carcinoma, cell line, adrenal gland .d 43 to 561 1 to 518   AAA   518/518
(100 %)
4 diff
(99.3 %id)
BU173682 melanotic melanoma, cell line, skin .d 43 to 558 1 to 516   AAA   516/516
(100 %)
1 diff
(99.9 %id)
BQ877388 melanotic melanoma, cell line, skin .d 43 to 561 1 to 519   AAA   519/519
(100 %)
1 diff
(99.9 %id)
BQ684683 melanotic melanoma, cell line, skin .d 43 to 558 1 to 516   AAA   516/516
(100 %)
1 diff
(99.9 %id)
BQ680078 melanotic melanoma, cell line, skin .d 43 to 558 1 to 516   AAA   516/516
(100 %)
1 diff
(99.9 %id)
BQ680794 melanotic melanoma, cell line, skin .d 43 to 558 1 to 516   AAA   516/516
(100 %)
1 diff
(99.9 %id)
CV808371 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .d 43 to 560 1 to 518   AAA   518/518
(100 %)
1 diff
(99.9 %id)
CB160315 Liver .d 43 to 560 1 to 518       518/518
(100 %)
1 diff
(99.9 %id)
BG471116 eye, retinoblastoma .d 44 to 567 1 to 523   AAA   523/523
(100 %)
2 diff
(99.7 %id)
BQ420569 epithelioid carcinoma, Pancreas .d 44 to 558 1 to 515   AAA   515/515
(100 %)
1 diff
(99.9 %id)
BE782914 eye, retinoblastoma .d 45 to 556 1 to 512       512/512
(100 %)
0 diff
(100 %id)
BG336415 choriocarcinoma, placenta .d 45 to 570 1 to 525   AAA   525/525
(100 %)
3 diff
(99.5 %id)
BI822102 pooled brain, lung, testis .d 45 to 566 1 to 521   AAA   521/521
(100 %)
1 diff
(99.9 %id)
BI760016 pooled colon, kidney, stomach .d 45 to 558 1 to 513   AAA   513/513
(100 %)
1 diff
(99.9 %id)
BM011251 brain, neuroblastoma, cell line .d 45 to 558 1 to 514   AAA   514/514
(100 %)
3 diff
(99.5 %id)
BF726187 eye, lens .d 46 to 558 1 to 513   AAA   513/513
(100 %)
1 diff
(99.9 %id)
CN431738.
matches multiple genes
embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 46 to 559 1 to 514     also hits gene COX6A1P2 514/516
(99 %)
2 diff
(99.7 %id)
CN431744 embryonic stem cells, DMSO-treated H9 cellline .d 46 to 559 1 to 514       514/516
(99 %)
1 diff
(99.9 %id)
CN431746 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 46 to 558 1 to 513   AAA   513/513
(100 %)
1 diff
(99.9 %id)
CN431747 embryonic stem cells, DMSO-treated H9 cellline .d 46 to 558 9 to 521   AAA   513/521
(98 %)
6 diff
(98.9 %id)
CN431749 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 46 to 564 1 to 519       519/519
(100 %)
0 diff
(100 %id)
AA482340.
matches multiple genes
lung .d 46 to 537 1 to 491     also hits gene COX6A1P2 491/491
(100 %)
1 diff
(99.8 %id)
BU175934 epithelioid carcinoma, Pancreas .d 46 to 558 1 to 513   AAA   513/513
(100 %)
1 diff
(99.9 %id)
BQ083196 Ascites, stomach .d 46 to 363 1 to 318       318/318
(100 %)
0 diff
(100 %id)
BF130533 hypernephroma, Kidney .d 47 to 556 1 to 510       510/537
(94 %)
1 diff
(99.9 %id)
BU552716 ovary, teratocarcinoma, cell line .d 47 to 566 1 to 520   AAA   520/520
(100 %)
0 diff
(100 %id)
CA455361 adenocarcinoma, cell line, breast .d 47 to 558 1 to 512   AAA   512/512
(100 %)
1 diff
(99.9 %id)
BU957766 adenocarcinoma, cell line, breast .d 47 to 558 1 to 512   AAA   512/512
(100 %)
1 diff
(99.9 %id)
CN431750 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 49 to 569 1 to 521       521/521
(100 %)
0 diff
(100 %id)
H87577 placenta .d 49 to 313 1 to 266   fully sequenced,   266/266
(100 %)
5 diff
(98.2 %id)
W61219.
matches multiple genes
heart .d 49 to 490 1 to 440     also hits gene COX6A1P2 440/441
(99 %)
6 diff
(98.7 %id)
BM557702 astrocytoma grade IV, cell line, brain .d 49 to 558 1 to 510   AAA   510/510
(100 %)
1 diff
(99.9 %id)
BE265193 lung, small cell carcinoma .d 51 to 555 1 to 506       506/508
(99 %)
2 diff
(99.7 %id)
BF038354 adenocarcinoma, ovary .d 51 to 558 1 to 508   AAA   508/508
(100 %)
3 diff
(99.5 %id)
BG394813 eye, retinoblastoma .d 51 to 558 1 to 508   AAA   508/508
(100 %)
5 diff
(99.1 %id)
BM826329 Ascites, stomach .d 51 to 552 1 to 502       502/502
(100 %)
0 diff
(100 %id)
BM997609 lung, Metastatic Chondrosarcoma .d 52 to 566 533 to 19   AAA   515/523
(98 %)
0 diff
(100 %id)
BM689723.
matches multiple genes
eye, Retina Foveal and Macular .d 52 to 517 9 to 474     Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base), also hits gene COX6A1P2 466/474
(98 %)
0 diff
(100 %id)
EL950100 eyeball .d 53 to 559 1 to 506       506/506
(100 %)
4 diff
(99.3 %id)
BE392881 endometrium, adenocarcinoma cell line, uterus .d 54 to 558 1 to 507   AAA   507/507
(100 %)
5 diff
(99.1 %id)
BE544610 cervical carcinoma cell line, cervix .d 55 to 571 1 to 517       517/519
(99 %)
3 diff
(99.5 %id)
BE907676 epithelioid carcinoma, Pancreas .d 56 to 558 1 to 503   AAA   503/503
(100 %)
3 diff
(99.5 %id)
BM854868 stomach .d 57 to 558 1 to 502   AAA   502/502
(100 %)
1 diff
(99.9 %id)
BM711700.
matches multiple genes
eye, human retina .d 59 to 555 1 to 497   fully sequenced, also hits gene COX6A1P2 497/497
(100 %)
1 diff
(99.8 %id)
BM821913 stomach .d 60 to 380 1 to 321       321/321
(100 %)
0 diff
(100 %id)
BE906825 epithelioid carcinoma, Pancreas .d 63 to 554 1 to 492       492/492
(100 %)
0 diff
(100 %id)
CN431736 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 68 to 553 1 to 486       486/486
(100 %)
0 diff
(100 %id)
BM685455.
matches multiple genes
eye, RPE and Choroid .d 68 to 544 7 to 483   fully sequenced, also hits gene COX6A1P2 477/483
(98 %)
6 diff
(98.8 %id)
BU732103.
matches multiple genes
eye, RPE and Choroid .d 68 to 560 511 to 19   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base), also hits gene COX6A1P2 493/502
(98 %)
1 diff
(99.9 %id)
AA027822.
matches multiple genes
uterus .d 88 to 559 481 to 3     also hits gene COX6A1P2 479/481
(99 %)
21 diff
(95.7 %id)
BE939854 uterus_tumor .d 91 to 226 148 to 13       136/148
(91 %)
4 diff
(97.3 %id)
BP388555 pancreatic islet .d 102 to 533 1 to 432     Submitted on the opposite strand 432/432
(100 %)
0 diff
(100 %id)
BE009927 breast_normal .d 103 to 362 276 to 6     Submitted on the opposite strand 269/276
(97 %)
13 diff
(95.3 %id)
AJ707412 heart .d 105 to 565 490 to 30   AAA Submitted on the opposite strand 461/461
(100 %)
1 diff
(99.8 %id)
BE827417 lung_tumor .d 112 to 464 356 to 3       354/361
(98 %)
1 diff
(99.8 %id)
AA648634 Ewing's sarcoma .d 118 to 556 440 to 1       440/448
(98 %)
2 diff
(99.6 %id)
AI086504 senescent fibroblast .d 124 to 558 446 to 12   AAA   435/435
(100 %)
0 diff
(100 %id)
H65626 liver and spleen .d 132 to 313 1 to 182   fully sequenced,   182/182
(100 %)
0 diff
(100 %id)
AA464455 ovarian tumor, ovary .d 137 to 558 1 to 422   fully sequenced,   422/422
(100 %)
2 diff
(99.6 %id)
BG980114 colon_normal .d 145 to 410 266 to 2       265/280
(94 %)
0 diff
(100 %id)
AW996510 breast_normal .d 155 to 348 192 to 2     Submitted on the opposite strand 191/208
(91 %)
0 diff
(100 %id)
BM693602.
matches multiple genes
eye, fetal eyes .d 162 to 558 1 to 397   fully sequenced, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base), also hits gene COX6A1P2 397/397
(100 %)
2 diff
(99.5 %id)
H93458.
matches multiple genes
liver and spleen .d 166 to 571 412 to 3     also hits gene COX6A1P2 410/416
(98 %)
4 diff
(99.1 %id)
BF745610 breast .d 180 to 432 261 to 9     Submitted on the opposite strand 253/271
(93 %)
1 diff
(99.7 %id)
AA010148.
matches multiple genes
heart .d 190 to 559 370 to 1     also hits gene COX6A1P2 370/370
(100 %)
1 diff
(99.8 %id)
AA687457 normal prostate, Prostate .d 193 to 515 322 to 1   fully sequenced,   322/322
(100 %)
0 diff
(100 %id)
AA457100 ovarian tumor, ovary .d 194 to 559 366 to 1   fully sequenced,   366/366
(100 %)
1 diff
(99.8 %id)
AA046801 heart .d 196 to 555 363 to 4   fully sequenced,   360/363
(99 %)
0 diff
(100 %id)
BM662994.
matches multiple genes
eye, RPE and Choroid .d 196 to 558 380 to 18   fully sequenced, AAA also hits gene COX6A1P2 363/363
(100 %)
0 diff
(100 %id)
BU730298.
matches multiple genes
eye, human retina .d 196 to 558 381 to 19   fully sequenced, AAA also hits gene COX6A1P2 363/363
(100 %)
1 diff
(99.8 %id)
BE166179.
matches multiple genes
head_neck .d 208 to 405 224 to 28     Submitted on the opposite strand, also hits gene COX6A1P2 197/224
(87 %)
0 diff
(100 %id)
AA385001 thyroid gland .d 219 to 475 1 to 257       257/257
(100 %)
0 diff
(100 %id)
AW815515 stomach .d 220 to 433 232 to 14       219/232
(94 %)
1 diff
(99.6 %id)
AA225769   .d 223 to 558 346 to 11   AAA   336/336
(100 %)
2 diff
(99.5 %id)
BG958286 colon .d 226 to 439 225 to 10       216/230
(93 %)
8 diff
(96.6 %id)
W32700 parathyroid gland, parathyroid tumor .d 234 to 557 1 to 325   fully sequenced,   325/325
(100 %)
1 diff
(99.7 %id)
AW068281 Bone, Hip .d 236 to 555 328 to 9       320/328
(97 %)
0 diff
(100 %id)
AI459867 colon .d 242 to 552 311 to 1       311/311
(100 %)
0 diff
(100 %id)
H65627 liver and spleen .d 252 to 539 291 to 1   fully sequenced,   291/291
(100 %)
1 diff
(99.7 %id)
H87467 placenta .d 252 to 559 313 to 1   fully sequenced,   313/313
(100 %)
1 diff
(99.7 %id)
AA443968   .d 252 to 559 312 to 5   fully sequenced,   308/312
(98 %)
0 diff
(100 %id)
AI816132 brain, frontal lobe .d 252 to 567 327 to 12   fully sequenced, AAA   316/316
(100 %)
2 diff
(99.4 %id)
DB370740   .d 252 to 558 307 to 1   fully sequenced,   307/307
(100 %)
0 diff
(100 %id)
BM672818 eye, optic nerve .d 252 to 566 333 to 19   fully sequenced, AAA   315/315
(100 %)
0 diff
(100 %id)
AW815854.
matches multiple genes
stomach .d 257 to 432 175 to 1     also hits gene COX6A1P2 175/175
(100 %)
2 diff
(98.9 %id)
AI719008 colon .d 276 to 552 277 to 1       277/277
(100 %)
0 diff
(100 %id)
AI718483 colon .d 278 to 547 270 to 1       270/270
(100 %)
0 diff
(100 %id)
AW327726 Burkitt lymphoma, lymph .d 281 to 558 1 to 278   AAA   278/278
(100 %)
0 diff
(100 %id)
BM669188.
matches multiple genes
eye, fetal eyes .d 311 to 558 266 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base), also hits gene COX6A1P2 248/248
(100 %)
2 diff
(99.2 %id)
AA522567 metastatic prostate bone lesion .d 313 to 559 253 to 6       248/256
(96 %)
0 diff
(100 %id)
AA689236 metastatic prostate bone lesion .d 313 to 553 241 to 1       241/241
(100 %)
9 diff
(96.3 %id)
EC467140 Prostate .d 319 to 426 1 to 108       108/108
(100 %)
0 diff
(100 %id)
CB051027 Prostate .d 323 to 559 246 to 10     Submitted on the opposite strand 237/246
(96 %)
0 diff
(100 %id)
EH342966.
matches multiple genes
  .d 328 to 381 1 to 54     also hits gene COX6A1P2 54/54
(100 %)
0 diff
(100 %id)
AA483109 Kidney .d 337 to 566 233 to 4       230/239
(96 %)
0 diff
(100 %id)
AA483741 Kidney .d 337 to 566 233 to 4       230/239
(96 %)
0 diff
(100 %id)
BQ215472 large cell carcinoma, lung .d 351 to 559 1 to 209   AAA   209/243
(86 %)
6 diff
(97.6 %id)
BQ368089 placenta_normal .d 353 to 473 130 to 11       120/130
(92 %)
0 diff
(100 %id)
BQ368092 placenta_normal .d 353 to 452 100 to 1       100/100
(100 %)
2 diff
(98.0 %id)
BQ368469 placenta_normal .d 353 to 570 344 to 127   AAA   218/218
(100 %)
1 diff
(99.6 %id)
CN431751 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 386 to 558 216 to 44   AAA Submitted on the opposite strand 173/173
(100 %)
1 diff
(99.5 %id)
BE646035 Prostate .d 401 to 558 158 to 1       158/158
(100 %)
0 diff
(100 %id)
W32701 parathyroid gland, parathyroid tumor .d 408 to 569 164 to 1   fully sequenced,   164/164
(100 %)
0 diff
(100 %id)
AW881739 ovary .d 424 to 545 126 to 5       122/130
(93 %)
0 diff
(100 %id)
EC571528 Prostate .d 453 to 546 112 to 19       94/115
(81 %)
0 diff
(100 %id)
BQ368553 placenta_normal .e 1 to 402 13 to 417 A2S V3G A6V G7V P8Y ... tiling clone,   405/417
(97 %)
15 diff
(96.5 %id)
BP311421 brain .f 1 to 582 2 to 577 exact tiling clone,   577/582
(99 %)
9 diff
(98.5 %id)
DA661966   .f 29 to 529 2 to 502 exact tiling clone, capped   501/501
(100 %)
0 diff
(100 %id)
BM751160 Ascites, stomach .g 1 to 372 1 to 371   tiling clone,   371/371
(100 %)
1 diff
(99.8 %id)
AI741116 pooled .g 129 to 527 445 to 47 D15A N21H A23V E25* tiling clone, AAA   399/399
(100 %)
17 diff
(95.8 %id)
BF508239   .g 205 to 531 343 to 18 exact tiling clone, AAA   326/327
(99 %)
1 diff
(99.7 %id)
BU634458 cell lines, Chondrosarcoma .h-u 1 to 767 784 to 19 exact tiling clone, AAA   766/766
(100 %)
5 diff
(99.4 %id)
AA173875   .h-u 159 to 585 1 to 436   tiling clone, fully sequenced,   436/436
(100 %)
6 diff
(98.7 %id)
AA173876   .h-u 159 to 588 1 to 439   fully sequenced,   439/439
(100 %)
12 diff
(97.3 %id)
AI798026 B-cell, chronic lymphotic leukemia .h-u 249 to 760 518 to 7 exact     512/518
(98 %)
0 diff
(100 %id)
AW800316 uterus .h-u 384 to 664 1 to 281       281/281
(100 %)
7 diff
(97.6 %id)
AA172403   .h-u 555 to 758 204 to 1 exact fully sequenced,   204/204
(100 %)
1 diff
(99.6 %id)
AA172206   .h-u 565 to 758 194 to 1   fully sequenced,   194/194
(100 %)
0 diff
(100 %id)
DA133449 alzheimer cortex .i-u 1 to 559 2 to 560 exact tiling clone, capped   559/559
(100 %)
1 diff
(99.9 %id)
DA122632 cerebellum .j-u 1 to 528 2 to 531 exact tiling clone, capped   530/530
(100 %)
3 diff
(99.5 %id)
BI038431 nervous_tumor .k-u 1 to 504 1 to 504 Q2* tiling clone,   504/504
(100 %)
7 diff
(98.7 %id)
AI769382 2 pooled tumors (clear cell type), Kidney .l 1 to 447 452 to 6 exact tiling clone,   447/452
(98 %)
0 diff
(100 %id)
BC034962 testis Gene COX6A1andGATC, variant not shown       available from MGC, AAA Suspected internal deletion, this clone was ignored    
BC064523 Ovary, pooled from 3 adults Gene COX6A1andGATC, variant not shown       available from MGC, AAA Suspected internal deletion, this clone was ignored    
BC047778 Peripheral Nervous System, sympathetictrunk Gene COX6A1andGATC, variant not shown       available from MGC, AAA Suspected internal deletion, this clone was ignored    
166 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i-u, .j-u, .k-u, .l Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC