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Gene COX11TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
394 supporting clones for gene COX11 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BE674609 carcinoid, lung .a 1 to 301 1 to 300   tiling clone, Submitted on the opposite strand 300/300
(100 %)
2 diff
(99.4 %id)
BU963567 mixed (pool of 40 RNAs) .a 64 to 418 1 to 354       354/461
(76 %)
8 diff
(98.3 %id)
DA489619 brain .a 220 to 810 2 to 593   tiling clone, capped   592/592
(100 %)
3 diff
(99.5 %id)
AV695418 hepatocellular carcinoma .a 354 to 734 375 to 1     Submitted on the opposite strand 375/378
(99 %)
7 diff
(98.2 %id)
AL603464 human skeletal muscle .a 414 to 1015 1 to 600       600/600
(100 %)
4 diff
(99.4 %id)
CD654076 Embryonic Stem cells .a 430 to 1257 12 to 839   tiling clone,   828/886
(93 %)
0 diff
(100 %id)
CB147841 Liver .a 603 to 1182 1 to 571   tiling clone,   571/571
(100 %)
3 diff
(99.5 %id)
H20874 whole brain .a 622 to 1032 1 to 426       426/433
(98 %)
31 diff
(92.9 %id)
CN268166 embryonic stem cells, cell lines H1, H7, andH9 .a 1017 to 1404 143 to 530       388/530
(73 %)
0 diff
(100 %id)
DA005924   .a 1068 to 1565 2 to 499   capped   498/502
(99 %)
5 diff
(99.1 %id)
AK054819 cerebellum .a 1076 to 2742 1 to 1667   tiling clone, available from FLJ,   1667/1667
(100 %)
1 diff
(100.0 %id)
DA056246 cerebellum .a 1077 to 1658 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA003420   .a 1220 to 1795 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
BE177470 head_neck .a 1269 to 1834 586 to 21     Submitted on the opposite strand 566/586
(96 %)
0 diff
(100 %id)
BE177466 head_neck .a 1312 to 1834 536 to 14     Submitted on the opposite strand 523/540
(96 %)
0 diff
(100 %id)
BE177472 head_neck .a 1323 to 1834 530 to 19     Submitted on the opposite strand 512/530
(96 %)
0 diff
(100 %id)
CR743273   .a 1339 to 1813 479 to 6     Submitted on the opposite strand 474/479
(98 %)
0 diff
(100 %id)
BI915003 brain .a 1384 to 2105 1 to 739       739/739
(100 %)
29 diff
(96.1 %id)
TI_57243659   .a 1385 to 2105 37 to 774       738/774
(95 %)
0 diff
(100 %id)
H20824 whole brain .a 1430 to 1813 403 to 2       402/417
(96 %)
0 diff
(100 %id)
BM787371 Ascites, stomach .a 1436 to 2116 1 to 681       681/681
(100 %)
0 diff
(100 %id)
EL949267 eyeball .a 1641 to 2347 46 to 751   tiling clone,   706/751
(94 %)
7 diff
(99.1 %id)
AI198212 anaplastic oligodendroglioma, brain .a 1703 to 2100 414 to 17   AAA   398/398
(100 %)
1 diff
(99.8 %id)
BQ340946 nervous_normal .a 1798 to 2095 1 to 299       299/299
(100 %)
13 diff
(95.7 %id)
BM724325 eye, fetal eye .a 1885 to 2397 1 to 507   fully sequenced,   507/507
(100 %)
2 diff
(99.7 %id)
BM272070 Pancreas, Purified pancreatic islet .a 2067 to 2625 11 to 569       559/569
(98 %)
0 diff
(100 %id)
CK824940 Pancreas, Purified pancreatic islet .a 2130 to 2701 1 to 572     Submitted on the opposite strand 572/572
(100 %)
1 diff
(99.9 %id)
W92974 liver and spleen .a 2143 to 2544 1 to 402       402/402
(100 %)
4 diff
(99.1 %id)
CB110914 Liver .a 2158 to 2672 1 to 515       515/524
(98 %)
1 diff
(99.9 %id)
DB315328 brain .a 2191 to 2742 552 to 1       552/552
(100 %)
1 diff
(99.9 %id)
DB296600 cerebellum .a 2195 to 2742 549 to 1       549/551
(99 %)
1 diff
(99.9 %id)
BX105177   .a 2278 to 2748 1 to 469   tiling clone,   469/469
(100 %)
2 diff
(99.6 %id)
TI_151761881   .a 2282 to 2733 522 to 71       452/1042
(43 %)
0 diff
(100 %id)
BM929832 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2289 to 2733 1 to 445       445/449
(99 %)
1 diff
(99.8 %id)
AA995327 2 pooled tumors (clear cell type), Kidney .a 2300 to 2745 448 to 3       446/448
(99 %)
0 diff
(100 %id)
AA909874 pooled .a 2331 to 2752 424 to 3       422/424
(99 %)
0 diff
(100 %id)
AA826563 carcinoid, lung .a 2338 to 2750 413 to 1       413/413
(100 %)
0 diff
(100 %id)
AI972122 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 2339 to 2706 368 to 1       368/368
(100 %)
0 diff
(100 %id)
AW978836   .a 2349 to 2750 402 to 1     Submitted on the opposite strand 402/404
(99 %)
26 diff
(93.6 %id)
BF087511 head_neck .a 2355 to 2657 8 to 309       302/309
(97 %)
0 diff
(100 %id)
BU741603 eye, fetal eye .a 2367 to 2750 402 to 19   fully sequenced, AAA   384/384
(100 %)
0 diff
(100 %id)
R29237   .a 2386 to 2579 1 to 192       192/192
(100 %)
2 diff
(99.0 %id)
AI077461 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2416 to 2873 458 to 1       458/458
(100 %)
1 diff
(99.8 %id)
BF332709 breast .a 2438 to 2649 213 to 2       212/213
(99 %)
0 diff
(100 %id)
AI140075 heart .a 2441 to 2873 433 to 1       433/433
(100 %)
1 diff
(99.8 %id)
AA836517 germinal center B cell .a 2446 to 2752 317 to 11       307/317
(96 %)
0 diff
(100 %id)
AA905009 pooled .a 2467 to 2752 287 to 2       286/287
(99 %)
0 diff
(100 %id)
AI139009   .a 2489 to 2876 388 to 1   tiling clone,   388/388
(100 %)
2 diff
(99.5 %id)
AW881419 ovary .a 2530 to 2709 19 to 197       179/197
(90 %)
0 diff
(100 %id)
AL699147 human skeletal muscle .a 2579 to 3193 1 to 615   tiling clone,   615/615
(100 %)
11 diff
(98.3 %id)
DA110389 cerebellum .a 2708 to 3037 2 to 331   tiling clone, to resequence, capped   330/330
(100 %)
11 diff
(96.7 %id)
DA633688.
matches multiple genes
Kidney .a 2878 to 3454 2 to 580   tiling clone, capped This clone was ignored, also hits gene CDNF 579/579
(100 %)
7 diff
(98.8 %id)
BE007865 breast_normal .a 3214 to 3539 1 to 327   tiling clone,   327/327
(100 %)
9 diff
(97.3 %id)
DB134329 thymus .a 3316 to 3844 2 to 530   tiling clone, capped   529/529
(100 %)
1 diff
(99.9 %id)
BU844632 ovary, teratocarcinoma, cell line .a 3448 to 4342 942 to 39   tiling clone, Submitted on the opposite strand 904/942
(95 %)
0 diff
(100 %id)
DA118403 cerebellum .a 3718 to 4276 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA619740   .a 3724 to 4309 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
BX483241   .a 3749 to 4266 27 to 544       518/544
(95 %)
0 diff
(100 %id)
BX476839   .a 3982 to 4414 1 to 433   tiling clone,   433/433
(100 %)
1 diff
(99.8 %id)
BF328418 breast_normal .a 4118 to 4487 371 to 3   tiling clone,   369/376
(98 %)
0 diff
(100 %id)
BX493960   .a 5392 to 5907 516 to 1   tiling clone, Submitted on the opposite strand 516/518
(99 %)
1 diff
(99.9 %id)
DB299831 cerebellum .a 6337 to 6903 567 to 1   tiling clone, to resequence,   567/576
(98 %)
6 diff
(99.0 %id)
AA194498 muscle, skeletal muscle .a 6407 to 6874 472 to 1   tiling clone,   472/474
(99 %)
9 diff
(98.2 %id)
AA928058 pooled .a 6528 to 6907 382 to 3   tiling clone,   380/382
(99 %)
0 diff
(100 %id)
AW104476 pooled .a 6528 to 6907 382 to 3       380/382
(99 %)
0 diff
(100 %id)
AI886001 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 6678 to 6903 249 to 24   AAA   226/226
(100 %)
4 diff
(98.3 %id)
BF725369 eye, Iris .b 1 to 664 1 to 664   tiling clone,   664/664
(100 %)
0 diff
(100 %id)
BF668718 brain, primitive neuroectoderm .b 131 to 891 1 to 758       758/828
(91 %)
43 diff
(94.9 %id)
BI602708 brain, hypothalamus .b 132 to 930 1 to 802       802/802
(100 %)
9 diff
(98.9 %id)
BI667426 brain, hypothalamus .b 132 to 916 1 to 781       781/783
(99 %)
13 diff
(98.4 %id)
BI667515 brain, hypothalamus .b 132 to 909 1 to 781       781/781
(100 %)
17 diff
(97.9 %id)
TI_45216454   .b 132 to 930 123 to 924       802/924
(86 %)
4 diff
(99.6 %id)
TI_44343384   .b 132 to 916 88 to 868       781/870
(89 %)
9 diff
(99.0 %id)
TI_44343474   .b 132 to 909 56 to 836       781/836
(93 %)
13 diff
(98.5 %id)
AF044321   .b 133 to 2791 9 to 2658   tiling clone, AAA   2650/2658
(99 %)
16 diff
(99.4 %id)
CB070374 Pancreas, Purified pancreatic islet .b 137 to 249 1 to 113       113/113
(100 %)
0 diff
(100 %id)
CR541837   .b 140 to 967 1 to 828       828/828
(100 %)
0 diff
(100 %id)
TI_57164883   .b 140 to 963 28 to 849       822/849
(96 %)
2 diff
(99.8 %id)
TI_1948085334   .b 140 to 925 127 to 925       799/1406
(56 %)
30 diff
(97.9 %id)
TI_1948085409   .b 140 to 957 130 to 963       834/1382
(60 %)
34 diff
(97.6 %id)
TI_1948085499   .b 140 to 966 127 to 964       838/1401
(59 %)
11 diff
(99.3 %id)
TI_1948085579   .b 140 to 943 129 to 934       806/1332
(60 %)
38 diff
(97.2 %id)
BI836177 pooled pancreas and spleen .b 142 to 963 1 to 820       820/820
(100 %)
2 diff
(99.8 %id)
DR761087 embryonic stem .b 142 to 958 1 to 818       818/818
(100 %)
1 diff
(99.9 %id)
CN399668 embryonic stem cells, DMSO-treated H9 cellline .b 143 to 887 1 to 745       745/745
(100 %)
0 diff
(100 %id)
CR620872 T cells (Jurkat cell line) .b 143 to 1730 1 to 1588       1588/1588
(100 %)
0 diff
(100 %id)
BX447772 T cells (Jurkat cell line) .b 143 to 955 1 to 802   fully sequenced,   802/802
(100 %)
5 diff
(99.4 %id)
BM922804 leukocyte .b 143 to 1106 1 to 980       980/1035
(94 %)
29 diff
(97.2 %id)
DR762340 embryonic stem .b 143 to 859 8 to 724       717/724
(99 %)
0 diff
(100 %id)
CN399664 embryonic stem cells, cell lines H1, H7, andH9 .b 144 to 798 1 to 655       655/655
(100 %)
1 diff
(99.9 %id)
BI088557 cervix .b 144 to 939 1 to 793       793/793
(100 %)
21 diff
(97.4 %id)
CV806155 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 145 to 844 1 to 700       700/700
(100 %)
2 diff
(99.8 %id)
CR617036 T cells (Jurkat cell line) Cot10-normalized .b 149 to 1729 1 to 1581       1581/1581
(100 %)
0 diff
(100 %id)
CR625857 Placenta Cot 25-normalized .b 149 to 1720 1 to 1572       1572/1572
(100 %)
0 diff
(100 %id)
AL551191 placenta, Placenta Cot 25-normalized .b 149 to 1136 1 to 987   fully sequenced,   987/987
(100 %)
2 diff
(99.8 %id)
AL558647 T cells from T cell leukemia .b 149 to 967 1 to 804   fully sequenced,   804/804
(100 %)
1 diff
(99.9 %id)
BG677993 skin, squamous cell carcinoma .b 149 to 854 1 to 707       707/707
(100 %)
4 diff
(99.5 %id)
BI752946 brain .b 149 to 886 1 to 736       736/736
(100 %)
3 diff
(99.6 %id)
TI_57219771   .b 149 to 886 204 to 939       736/939
(78 %)
2 diff
(99.8 %id)
BX352719 Neuroblastoma Cot 10-normalized .b 157 to 1040 1 to 885   fully sequenced,   885/885
(100 %)
3 diff
(99.7 %id)
CR600874 Neuroblastoma Cot 10-normalized .b 158 to 1747 1 to 1590       1590/1590
(100 %)
0 diff
(100 %id)
BY994569   .b 158 to 793 29 to 664       636/664
(95 %)
0 diff
(100 %id)
BE298770 muscle, rhabdomyosarcoma .b 163 to 851 1 to 686       686/707
(97 %)
16 diff
(97.8 %id)
BQ434334 eye, retinoblastoma .b 163 to 1075 1 to 921       921/922
(99 %)
15 diff
(98.4 %id)
BE882783 leiomyosarcoma, uterus .b 164 to 867 1 to 701       701/794
(88 %)
9 diff
(98.9 %id)
BE782160 eye, retinoblastoma .b 170 to 924 1 to 748       748/952
(78 %)
21 diff
(97.8 %id)
CN399669 embryonic stem cells, DMSO-treated H9 cellline .b 171 to 802 1 to 632       632/632
(100 %)
0 diff
(100 %id)
BE780433 eye, retinoblastoma .b 173 to 923 1 to 745       745/875
(85 %)
19 diff
(97.9 %id)
BE251505 eye, retinoblastoma .b 177 to 866 1 to 695       695/696
(99 %)
23 diff
(96.7 %id)
CV814272 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 190 to 955 1 to 769       769/903
(85 %)
10 diff
(98.9 %id)
CX757768 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 190 to 912 1 to 722     Submitted on the opposite strand 722/722
(100 %)
1 diff
(99.9 %id)
BF697758 brain, primitive neuroectoderm .b 207 to 891 1 to 671       671/835
(80 %)
26 diff
(96.9 %id)
AL557622.
matches multiple genes
T cells (Jurkat cell line), T cells from T cell leukemia .b 226 to 909 1 to 684     Submitted on the opposite strand, also hits gene royklubu 684/684
(100 %)
0 diff
(100 %id)
BQ229044 large cell carcinoma, lung .b 301 to 1218 1 to 933       933/933
(100 %)
16 diff
(98.3 %id)
BU173280 leiomyosarcoma, uterus .b 367 to 1195 8 to 836       829/836
(99 %)
0 diff
(100 %id)
BF692321 melanotic melanoma, high MDR, skin .b 415 to 1047 1 to 628       628/769
(81 %)
12 diff
(98.5 %id)
TI_149277496   .b 415 to 1079 764 to 100   AAA   665/665
(100 %)
2 diff
(99.7 %id)
CK904646 Islets of Langerhans, Pancreas .b 426 to 1008 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BU677711 lung .b 438 to 1079 656 to 15   AAA   642/644
(99 %)
2 diff
(99.7 %id)
BM068813 Islets of Langerhans, Pancreas .b 442 to 956 1 to 515       515/515
(100 %)
1 diff
(99.9 %id)
BM069760 Islets of Langerhans, Pancreas .b 442 to 638 1 to 197       197/199
(98 %)
1 diff
(99.5 %id)
BG178936 adenocarcinoma, cell line, Prostate .b 484 to 1288 1 to 814       814/830
(98 %)
34 diff
(96.0 %id)
BQ188107 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 503 to 908 1 to 405   fully sequenced, Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 405/405
(100 %)
3 diff
(99.3 %id)
BQ185283 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 631 to 908 296 to 19   fully sequenced, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 278/296
(93 %)
0 diff
(100 %id)
BF184099 bone marrow, from chronic myelogenous leukemia .b 659 to 1333 1 to 672       672/859
(78 %)
16 diff
(98.2 %id)
CB114718 Liver .b 673 to 1245 1 to 573       573/573
(100 %)
2 diff
(99.7 %id)
AA370152 Prostate .b 679 to 960 1 to 282       282/282
(100 %)
0 diff
(100 %id)
BM699258 eye, fetal eyes .b 721 to 1260 1 to 540       540/540
(100 %)
0 diff
(100 %id)
BE567935 bladder, carcinoma, cell line .b 724 to 1408 1 to 661       661/877
(75 %)
43 diff
(95.1 %id)
BX447771 T cells (Jurkat cell line) .b 925 to 1730 805 to 1   fully sequenced,   805/805
(100 %)
7 diff
(99.2 %id)
AL580421 T cells from T cell leukemia .b 937 to 1708 790 to 17   fully sequenced,   774/790
(97 %)
21 diff
(97.4 %id)
BX352718 Neuroblastoma Cot 10-normalized .b 1074 to 1747 673 to 1   fully sequenced,   876/876
(100 %)
45 diff
(94.9 %id)
AL574836 placenta, Placenta Cot 25-normalized .b 1106 to 1720 613 to 1   fully sequenced,   613/613
(100 %)
7 diff
(98.9 %id)
R35377 whole brain .b 1176 to 1552 1 to 385       385/440
(87 %)
14 diff
(96.9 %id)
BM069526 Islets of Langerhans, Pancreas .b 1201 to 1761 565 to 5       561/565
(99 %)
0 diff
(100 %id)
BM263273 Pancreas, Purified pancreatic islet .b 1247 to 1838 592 to 1       592/592
(100 %)
1 diff
(99.9 %id)
BQ129421 Islets of Langerhans, Pancreas .b 1384 to 1950 1 to 567       567/567
(100 %)
1 diff
(99.9 %id)
N24311.
matches multiple genes
melanocyte .b 1432 to 1796 1 to 364     also hits gene goyklee 364/364
(100 %)
1 diff
(99.8 %id)
AA688421 germinal center B cell .b 1467 to 1847 390 to 11   AAA   380/380
(100 %)
3 diff
(99.3 %id)
BF673066 muscle (skeletal) .b 1521 to 2226 1 to 687       687/891
(77 %)
29 diff
(96.8 %id)
BG393992 embryonal carcinoma, cell line, testis .b 1535 to 2318 1 to 798       798/996
(80 %)
43 diff
(95.7 %id)
CB070316 Pancreas, Purified pancreatic islet .b 1537 to 1838 302 to 1       302/302
(100 %)
0 diff
(100 %id)
CD723010 eye, lacrimal gland .b 1644 to 2270 1 to 627   tiling clone,   627/627
(100 %)
0 diff
(100 %id)
Z30132   .b 1686 to 1935 1 to 250       250/250
(100 %)
6 diff
(97.6 %id)
D57445   .b 1740 to 2135 1 to 395       395/395
(100 %)
2 diff
(99.5 %id)
D58082   .b 1740 to 2134 1 to 395       395/395
(100 %)
3 diff
(99.3 %id)
DB527557.
matches multiple genes
testis .b 1749 to 2221 473 to 1     also hits gene TOM1L1 473/473
(100 %)
1 diff
(99.8 %id)
DB537972.
matches multiple genes
hippocampus .b 1749 to 2177 429 to 1     also hits gene TOM1L1 429/429
(100 %)
2 diff
(99.6 %id)
EC502129 Prostate .b 1755 to 1876 1 to 119       119/119
(100 %)
6 diff
(95.0 %id)
CN399667 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 1807 to 2124 1 to 318       318/318
(100 %)
2 diff
(99.4 %id)
AJ711211 heart .b 1859 to 2393 21 to 555       535/555
(96 %)
0 diff
(100 %id)
AW020268 cochlea, ear .b 1946 to 2269 1 to 324       324/324
(100 %)
5 diff
(98.5 %id)
BX104348 whole brain .b 2010 to 2494 497 to 14       484/497
(97 %)
0 diff
(100 %id)
AI634000 Kidney .b 2042 to 2497 456 to 1       456/456
(100 %)
2 diff
(99.6 %id)
H98880.
matches multiple genes
melanocyte .b 2044 to 2454 416 to 1     also hits gene goyklee 416/421
(98 %)
5 diff
(98.9 %id)
AI682787 adenocarcinoma, Pancreas .b 2056 to 2496 441 to 1       441/441
(100 %)
0 diff
(100 %id)
AI352118   .b 2084 to 2492 414 to 6       409/414
(98 %)
0 diff
(100 %id)
BF431215 Kidney .b 2094 to 2497 405 to 2       404/405
(99 %)
0 diff
(100 %id)
R49679 whole brain .b 2135 to 2494 382 to 8       375/446
(84 %)
0 diff
(100 %id)
NM_004375.3   .c 1 to 2414 1 to 2414 exact RefSeq, AAA   2414/2414
(100 %)
0 diff
(100 %id)
BI598312 brain, hypothalamus .c 2 to 913 1 to 920   tiling clone,   920/953
(96 %)
39 diff
(96.0 %id)
TI_45214804   .c 6 to 913 122 to 1037       916/1070
(85 %)
33 diff
(97.0 %id)
BX446759 neuroblastoma .c 35 to 901 1 to 867       867/867
(100 %)
13 diff
(98.6 %id)
AU310201 neuroblastoma .c 44 to 635 9 to 600       592/600
(98 %)
0 diff
(100 %id)
BI545235 brain, hippocampus .c 45 to 798 1 to 755       755/755
(100 %)
11 diff
(98.6 %id)
BI600387 brain, hypothalamus .c 45 to 937 1 to 887       887/893
(99 %)
32 diff
(96.5 %id)
TI_44165311   .c 45 to 798 125 to 879       755/879
(85 %)
8 diff
(99.1 %id)
TI_45211867   .c 45 to 937 89 to 975       887/981
(90 %)
29 diff
(97.1 %id)
BC005895 Brain, primitive neuroectodermal .c 48 to 1643 1 to 1596   available from MGC, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 1596/1598
(99 %)
3 diff
(99.9 %id)
BM452322 eye, retinoblastoma .c 70 to 1024 1 to 975       975/1062
(91 %)
35 diff
(96.8 %id)
CB051763 leiomyosarcoma, soft tissue .c 82 to 719 10 to 647       638/647
(98 %)
0 diff
(100 %id)
AK293851 cerebellum .c 86 to 1451 1 to 1366   tiling clone,   1366/1366
(100 %)
0 diff
(100 %id)
BU154095 eye, retinoblastoma .c 91 to 990 1 to 899       899/900
(99 %)
14 diff
(98.5 %id)
BU902314 leiomyosarcoma, uterus .c 91 to 1160 36 to 1109       1074/1164
(92 %)
31 diff
(97.4 %id)
BU163909 eye, retinoblastoma .c 105 to 952 1 to 853       853/889
(95 %)
23 diff
(97.5 %id)
F13373 brain, total brain .c 428 to 758 1 to 332       332/332
(100 %)
1 diff
(99.7 %id)
U79270 brain .c 428 to 1682 1 to 1255   tiling clone, AAA   1255/1255
(100 %)
0 diff
(100 %id)
BE857609 brain, glioblastoma (pooled) .c 448 to 1157 709 to 1       709/709
(100 %)
5 diff
(99.3 %id)
CF147424 CNCAP(3)T-225 cell line, Prostate .c 448 to 1146 8 to 707       700/707
(99 %)
8 diff
(98.9 %id)
TI_154180054   .c 448 to 1256 79 to 880       802/888
(90 %)
31 diff
(96.6 %id)
AA452614   .c 492 to 948 1 to 457       457/457
(100 %)
0 diff
(100 %id)
AA431577.
matches multiple genes
  .c 497 to 955 1 to 458     also hits gene CHODL 458/458
(100 %)
1 diff
(99.8 %id)
CB138538 Liver .c 519 to 1116 1 to 598       598/598
(100 %)
0 diff
(100 %id)
CB139130 Liver .c 519 to 1116 1 to 598       598/598
(100 %)
0 diff
(100 %id)
CB141214 Liver .c 519 to 1162 1 to 643       643/643
(100 %)
1 diff
(99.9 %id)
CB141234 Liver .c 519 to 1162 1 to 644       644/644
(100 %)
0 diff
(100 %id)
CB146946 Liver .c 519 to 979 1 to 461       461/461
(100 %)
0 diff
(100 %id)
R81440 placenta .c 530 to 862 1 to 340       340/382
(89 %)
12 diff
(96.9 %id)
BG430839 Kidney .c 530 to 1349 1 to 820       820/820
(100 %)
26 diff
(96.9 %id)
BE883677 leiomyosarcoma, uterus .c 860 to 1513 1 to 654   AAA   654/808
(80 %)
13 diff
(98.4 %id)
BE865709 bladder, carcinoma, cell line .c 870 to 1524 1 to 649       649/833
(77 %)
18 diff
(97.9 %id)
DA362306 subthalamic nucleus .c 883 to 1436 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
AA312986 Bone .c 929 to 1238 1 to 310       310/310
(100 %)
0 diff
(100 %id)
AW955540   .c 930 to 1321 1 to 393       393/396
(99 %)
4 diff
(99.0 %id)
CA449847 Chondrosarcoma, Left Pelvis .c 949 to 1678 748 to 19   AAA   730/730
(100 %)
0 diff
(100 %id)
BQ773457 Chondrosarcoma Cell line .c 954 to 1678 740 to 19   AAA   722/722
(100 %)
8 diff
(98.9 %id)
BM263561 Pancreas, Purified pancreatic islet .c 959 to 1536 18 to 595       578/595
(97 %)
0 diff
(100 %id)
BU853256 testis .c 962 to 1671 1 to 714       714/796
(89 %)
17 diff
(97.9 %id)
CB529865 Aveolar Macrophage, lung .c 966 to 1678 724 to 19   AAA   706/709
(99 %)
10 diff
(98.6 %id)
AV722629 hypothalamus .c 975 to 1629 1 to 656       656/672
(97 %)
6 diff
(99.2 %id)
CB044591 colon, juvenile granulosa tumor .c 978 to 1629 12 to 663       652/663
(98 %)
0 diff
(100 %id)
CB242177 Human Lung Epithelial cells, lung .c 978 to 1678 718 to 19   AAA   700/705
(99 %)
4 diff
(99.5 %id)
BF030794 hypernephroma, Kidney .c 988 to 1689 1 to 707       707/884
(79 %)
67 diff
(92.5 %id)
BM999923 Fibrosarcoma .c 991 to 1678 702 to 19   AAA   684/686
(99 %)
10 diff
(98.6 %id)
BQ045344 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 994 to 1678 700 to 19   AAA   682/682
(100 %)
5 diff
(99.3 %id)
CB051762 leiomyosarcoma, soft tissue .c 1011 to 1678 690 to 24   AAA   667/667
(100 %)
3 diff
(99.6 %id)
BG500841 adenocarcinoma, Prostate .c 1057 to 1654 1 to 606       606/722
(83 %)
19 diff
(97.4 %id)
AI125412   .c 1082 to 1679 600 to 3       598/600
(99 %)
0 diff
(100 %id)
R13369 whole brain .c 1094 to 1387 1 to 295       295/335
(88 %)
7 diff
(98.0 %id)
CK904645 Islets of Langerhans, Pancreas .c 1139 to 1679 545 to 5       541/545
(99 %)
0 diff
(100 %id)
CA444970 lung, Metastatic Chondrosarcoma .c 1152 to 1678 545 to 19   AAA   527/527
(100 %)
0 diff
(100 %id)
AI703310 carcinoid, lung .c 1157 to 1644 488 to 1       488/488
(100 %)
0 diff
(100 %id)
AA587332 colon, colon tumor RER+ .c 1176 to 1676 500 to 1       500/500
(100 %)
3 diff
(99.4 %id)
AI741249 pooled .c 1185 to 1668 487 to 4       484/487
(99 %)
0 diff
(100 %id)
BF439114 pooled .c 1197 to 1683 491 to 6       486/491
(98 %)
0 diff
(100 %id)
BM054781 Islets of Langerhans, Pancreas .c 1201 to 1678 485 to 6       480/485
(98 %)
0 diff
(100 %id)
BE716199 head_neck .c 1202 to 1331 1 to 130       130/130
(100 %)
2 diff
(98.5 %id)
AI860867 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 1214 to 1315 102 to 1       102/102
(100 %)
0 diff
(100 %id)
CA397732 eye, RPE/choroid .c 1228 to 1597 41 to 410       370/410
(90 %)
0 diff
(100 %id)
AA621822 colon, colon tumor RER+ .c 1231 to 1678 447 to 1       447/447
(100 %)
3 diff
(99.4 %id)
AI274113 adenocarcinoma, colon .c 1246 to 1679 437 to 5       433/437
(99 %)
0 diff
(100 %id)
R39440.
matches multiple genes
whole brain .c 1281 to 1682 417 to 12   AAA also hits gene COX11P1 406/407
(99 %)
11 diff
(97.3 %id)
FN176561 breast carcinoma .c 1310 to 1414 7 to 106       100/106
(94 %)
6 diff
(94.4 %id)
AA450001   .c 1313 to 1682 369 to 1       369/369
(100 %)
3 diff
(99.2 %id)
AI367125 adenocarcinoma, colon .c 1313 to 1679 371 to 5       367/371
(98 %)
0 diff
(100 %id)
BU564323 mixed (pool of 40 RNAs) .c 1331 to 1676 1 to 345   AAA   345/345
(100 %)
5 diff
(98.6 %id)
AW264488 brain, three pooled meningiomas .c 1333 to 1679 346 to 1       346/346
(100 %)
16 diff
(95.4 %id)
AW768350 lymph node, lymphoma, follicular mixed small and largecell .c 1333 to 1679 346 to 1       346/346
(100 %)
3 diff
(99.2 %id)
AW770848 colon, juvenile granulosa tumor .c 1333 to 1645 313 to 1       313/313
(100 %)
1 diff
(99.7 %id)
BF475487 sciatic nerve .c 1333 to 1655 326 to 1       326/326
(100 %)
6 diff
(98.2 %id)
AW271681 Kidney .c 1340 to 1673 335 to 3       333/335
(99 %)
10 diff
(97.1 %id)
AA806999 germinal center B cell .c 1356 to 1681 351 to 26   AAA   326/326
(100 %)
1 diff
(99.7 %id)
F10965 brain, total brain .c 1388 to 1682 295 to 1       295/295
(100 %)
1 diff
(99.7 %id)
AI250033 adenocarcinoma, Pancreas .c 1401 to 1679 283 to 5       279/283
(98 %)
0 diff
(100 %id)
R81643 placenta .c 1437 to 1645 209 to 1       209/209
(100 %)
0 diff
(100 %id)
EC561943 Prostate .c 1481 to 1590 1 to 105       105/105
(100 %)
8 diff
(92.4 %id)
EC504107 Prostate .c 1482 to 1590 1 to 105       105/105
(100 %)
5 diff
(95.3 %id)
EC491831 Prostate .c 1524 to 1627 1 to 103       103/103
(100 %)
5 diff
(95.2 %id)
BU620049 Cell Line, Chondrosarcoma .c 1647 to 2414 783 to 19   tiling clone, AAA   765/767
(99 %)
9 diff
(98.9 %id)
BE548199 cervical carcinoma cell line, cervix .c 1673 to 2400 1 to 725   tiling clone,   725/726
(99 %)
22 diff
(97.0 %id)
BQ016087 lung, Metastatic Chondrosarcoma .c 1713 to 2414 719 to 19   AAA   701/701
(100 %)
5 diff
(99.3 %id)
W37274 parathyroid gland, parathyroid tumor .c 1733 to 2119 1 to 402       402/405
(99 %)
16 diff
(96.1 %id)
AI760632 2 pooled tumors (clear cell type), Kidney .c 1791 to 2404 624 to 11       614/624
(98 %)
0 diff
(100 %id)
BM743265 stomach .c 1832 to 2415 1 to 584   tiling clone,   584/592
(98 %)
1 diff
(99.9 %id)
AU310202 neuroblastoma .c 1859 to 2415 560 to 4       557/560
(99 %)
0 diff
(100 %id)
BG057911 dorsal root ganglia .c 2066 to 2414 364 to 16   AAA   349/349
(100 %)
1 diff
(99.8 %id)
CB240792 Human Lung Epithelial cells, lung .c 2066 to 2414 367 to 19   AAA   349/358
(97 %)
2 diff
(99.5 %id)
DA108687 cerebellum .c 2113 to 2668 2 to 557   tiling clone, capped   556/556
(100 %)
1 diff
(99.9 %id)
CB044590 colon, juvenile granulosa tumor .c 2173 to 2414 299 to 58   AAA   242/242
(100 %)
30 diff
(87.7 %id)
W33157 parathyroid gland, parathyroid tumor .c 2273 to 2414 155 to 14   AAA   142/144
(98 %)
0 diff
(100 %id)
BM451887 eye, retinoblastoma .c 2504 to 3275 1 to 775   tiling clone,   775/902
(85 %)
6 diff
(99.4 %id)
NM_001162862.1   .d 1 to 811 1 to 811 exact RefSeq, AAA   811/811
(100 %)
0 diff
(100 %id)
NM_001162861.1   .e 1 to 825 1 to 825 exact RefSeq, AAA   825/825
(100 %)
0 diff
(100 %id)
NR_027941.1   .f 1 to 1128 1 to 1128 exact RefSeq, tiling clone, AAA   1128/1128
(100 %)
0 diff
(100 %id)
BQ432122 melanotic melanoma, skin .f 62 to 814 1 to 758       758/790
(95 %)
7 diff
(99.2 %id)
AV702070 adrenal gland .f 199 to 813 1 to 615       615/615
(100 %)
1 diff
(99.9 %id)
TI_149293429   .f 290 to 1120 898 to 77   AAA   822/964
(85 %)
18 diff
(98.2 %id)
BM975167 lung .f 370 to 1120 769 to 19   AAA   751/754
(99 %)
4 diff
(99.5 %id)
AI865644 normal prostate, Prostate .f 501 to 819 331 to 13   AAA   319/319
(100 %)
5 diff
(98.5 %id)
BF222177 Prostate .f 505 to 819 319 to 5       315/319
(98 %)
0 diff
(100 %id)
BM693358 eye, Retina Foveal and Macular .f 597 to 1091 1 to 495   fully sequenced,   495/495
(100 %)
0 diff
(100 %id)
AA836568 germinal center B cell .f 703 to 1124 427 to 6       422/427
(98 %)
1 diff
(99.8 %id)
BM668632 eye, Retina Foveal and Macular .f 795 to 1120 344 to 19   fully sequenced, AAA   326/326
(100 %)
0 diff
(100 %id)
AK295381 corpus callosum .g 1 to 1103 6 to 1108 exact tiling clone,   1108/1108
(100 %)
0 diff
(100 %id)
BG706808 brain, hypothalamus .g 1 to 869 5 to 867 H151N K245Q T247H     867/869
(99 %)
23 diff
(97.4 %id)
BG709604 brain, hypothalamus .g 1 to 761 5 to 763 A45L A46Q E47R R48G V49*     763/763
(100 %)
13 diff
(98.3 %id)
DR003472 fetal brain .g 37 to 732 39 to 734       696/734
(94 %)
0 diff
(100 %id)
BG703922 brain, hippocampus .g 41 to 825 1 to 787       787/820
(95 %)
21 diff
(97.5 %id)
BM925402 brain .g 55 to 962 9 to 921       913/1039
(87 %)
16 diff
(98.5 %id)
BI753184 brain .g 62 to 962 1 to 900       900/900
(100 %)
8 diff
(99.2 %id)
TI_57217873   .g 62 to 962 63 to 962       900/962
(93 %)
6 diff
(99.4 %id)
AI376724   .g 347 to 1083 742 to 6       737/742
(99 %)
5 diff
(99.4 %id)
AI826339 normal prostate, Prostate .g 461 to 1083 624 to 2       623/624
(99 %)
3 diff
(99.6 %id)
AI217675 pooled .g 545 to 1076 537 to 6       532/537
(99 %)
0 diff
(100 %id)
CA306557 Alveolar Macrophage, lung .g 547 to 1085 556 to 18   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 539/539
(100 %)
2 diff
(99.7 %id)
BG503921 embryonal carcinoma, testis .g 571 to 1191 1 to 620       620/620
(100 %)
3 diff
(99.6 %id)
AW384367 head_neck .g 676 to 1053 8 to 387       380/394
(96 %)
8 diff
(98.0 %id)
FN081724 breast carcinoma .g 721 to 784 1 to 62       62/62
(100 %)
2 diff
(96.8 %id)
T23500   .g 740 to 1085 349 to 4       346/349
(99 %)
0 diff
(100 %id)
T23424   .g 750 to 1085 339 to 4       336/339
(99 %)
0 diff
(100 %id)
T23455   .g 780 to 1085 309 to 4       306/309
(99 %)
0 diff
(100 %id)
BP332164 renal proximal tubule .g 817 to 1394 1 to 581       581/584
(99 %)
9 diff
(98.5 %id)
DA140838 alzheimer cortex .g 1090 to 1724 2 to 636   tiling clone, capped   635/635
(100 %)
0 diff
(100 %id)
BE622174 melanotic melanoma, skin .g 1126 to 1767 1 to 638       638/638
(100 %)
5 diff
(99.3 %id)
BG252784 adenocarcinoma, cell line, Liver .g 1126 to 1814 1 to 693       693/973
(71 %)
36 diff
(96.4 %id)
BQ228730 large cell carcinoma, lung .g 1166 to 1918 1 to 762   tiling clone,   762/924
(82 %)
24 diff
(97.5 %id)
TI_149315462   .g 1170 to 2063 967 to 85   tiling clone, AAA   883/984
(89 %)
19 diff
(98.1 %id)
BG498046 adenocarcinoma, Prostate .g 1193 to 1899 1 to 711       711/913
(77 %)
16 diff
(98.3 %id)
CB985143 Pooled-Glandular .g 1194 to 1937 1 to 753   tiling clone,   753/756
(99 %)
15 diff
(98.1 %id)
BG287320 bladder, transitional cell papilloma, cell line .g 1195 to 1920 1 to 740       740/1028
(71 %)
33 diff
(96.8 %id)
AA215835 germinal center B cell .g 1227 to 1553 1 to 329       329/329
(100 %)
2 diff
(99.4 %id)
BM688180 eye, human retina .g 1255 to 1834 9 to 588       580/588
(98 %)
0 diff
(100 %id)
DC328640 corpus callosum .h 1 to 586 1 to 587       587/587
(100 %)
1 diff
(99.9 %id)
NR_027942.1   .h 1 to 1114 1 to 1114 exact RefSeq, tiling clone, AAA   1114/1114
(100 %)
0 diff
(100 %id)
DC377024 brain .h 4 to 465 1 to 463       463/463
(100 %)
2 diff
(99.6 %id)
DA137508 alzheimer cortex .h 6 to 549 2 to 545   capped   544/544
(100 %)
5 diff
(99.1 %id)
BP263179 small intestine .h 6 to 579 1 to 573       573/573
(100 %)
2 diff
(99.7 %id)
BP228538   .h 7 to 588 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP270292 small intestine .h 7 to 587 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DA304639 hippocampus .h 8 to 587 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DB477373 hippocampus .h 8 to 498 1 to 491       491/491
(100 %)
0 diff
(100 %id)
DA194055 amygdala .h 9 to 572 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
BQ221043 large cell carcinoma, lung .h 29 to 671 1 to 647       647/950
(68 %)
24 diff
(97.5 %id)
BM549661 leukocyte .h 39 to 705 24 to 690       667/1111
(60 %)
3 diff
(99.8 %id)
BG610849 adenocarcinoma, Prostate .h 41 to 659 1 to 628       628/629
(99 %)
25 diff
(96.1 %id)
BP224480   .h 42 to 623 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BP224497   .h 42 to 623 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DB243605 stomach, tumor tissue .h 42 to 614 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
BI551890 brain, hippocampus .h 45 to 692 1 to 661       661/773
(85 %)
27 diff
(96.6 %id)
BI552064 brain, hippocampus .h 45 to 671 1 to 627       627/627
(100 %)
5 diff
(99.3 %id)
BI670147 brain, hypothalamus .h 45 to 678 1 to 633       633/633
(100 %)
4 diff
(99.4 %id)
TI_44171602   .h 45 to 692 84 to 744       661/856
(77 %)
16 diff
(98.2 %id)
TI_44171690   .h 45 to 671 83 to 709       627/709
(88 %)
1 diff
(99.9 %id)
TI_44344594   .h 45 to 678 81 to 713       633/713
(88 %)
1 diff
(99.9 %id)
DA097337 cerebellum .h 46 to 556 2 to 514   capped   513/513
(100 %)
3 diff
(99.5 %id)
BI600359 brain, hypothalamus .h 46 to 786 1 to 742 V223G     742/742
(100 %)
7 diff
(99.1 %id)
BF701459 brain, primitive neuroectoderm .h 47 to 669 1 to 644       644/909
(70 %)
48 diff
(94.8 %id)
BF667859 brain, primitive neuroectoderm .h 48 to 661 1 to 607       607/850
(71 %)
18 diff
(97.9 %id)
BP318301 pericardium .h 49 to 630 1 to 583       583/583
(100 %)
8 diff
(98.7 %id)
DA019392   .h 50 to 613 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB504747.
matches multiple genes
hypothalamus .h 50 to 516 1 to 467     also hits gene TOM1L1 467/467
(100 %)
0 diff
(100 %id)
BP260343 heart .h 50 to 628 1 to 580       580/580
(100 %)
1 diff
(99.9 %id)
TI_45215350   .h 50 to 786 128 to 865 V223G     738/865
(85 %)
2 diff
(99.8 %id)
BP265722 thyroid .h 50 to 629 1 to 580       580/580
(100 %)
0 diff
(100 %id)
DB494568 hypothalamus .h 51 to 554 1 to 504       504/506
(99 %)
4 diff
(99.3 %id)
CN399671 embryonic stem cells, DMSO-treated H9 cellline .h 52 to 679 1 to 628       628/628
(100 %)
5 diff
(99.3 %id)
BF664770 brain, primitive neuroectoderm .h 54 to 707 1 to 652       652/817
(79 %)
25 diff
(97.0 %id)
DA223730 brain .h 56 to 542 2 to 488   capped   487/487
(100 %)
0 diff
(100 %id)
BF667591 brain, primitive neuroectoderm .h 56 to 700 1 to 643       643/842
(76 %)
18 diff
(97.9 %id)
DA418846 thalamus .h 57 to 596 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
BX488963   .h 57 to 607 1 to 551       551/551
(100 %)
1 diff
(99.9 %id)
AU098896   .h 57 to 356 1 to 300       300/300
(100 %)
4 diff
(98.7 %id)
AU103724   .h 57 to 106 1 to 50       50/50
(100 %)
2 diff
(96.0 %id)
BP239114 Liver .h 57 to 651 1 to 595       595/595
(100 %)
5 diff
(99.2 %id)
BM751306 Ascites, stomach .h 57 to 547 25 to 515       491/515
(95 %)
0 diff
(100 %id)
CV027452 mixed .h 58 to 513 1 to 456       456/456
(100 %)
0 diff
(100 %id)
DB458239 testis .h 58 to 535 1 to 479       479/479
(100 %)
1 diff
(99.8 %id)
DB483367 hippocampus .h 58 to 509 1 to 452       452/452
(100 %)
0 diff
(100 %id)
BP239019 Liver .h 58 to 665 2 to 610       609/610
(99 %)
7 diff
(98.9 %id)
DB179185 kidney, tumor tissue .h 58 to 611 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
BG472470 eye, retinoblastoma .h 60 to 807 1 to 753       753/754
(99 %)
16 diff
(97.9 %id)
CV570880 cornea, eye .h 60 to 637 1 to 578       578/578
(100 %)
0 diff
(100 %id)
BQ636306 eye, retina .h 61 to 320 1 to 260       260/260
(100 %)
3 diff
(98.9 %id)
CX760891 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .h 61 to 704 1 to 636     Submitted on the opposite strand 636/715
(88 %)
16 diff
(97.8 %id)
DA175409 amygdala .h 63 to 625 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
BM967191 Islets of Langerhans, Pancreas .h 63 to 610 1 to 548   fully sequenced,   548/548
(100 %)
0 diff
(100 %id)
DN993437 brain, whole brain .h 65 to 705 7 to 646       640/646
(99 %)
0 diff
(100 %id)
BY796090 eye .h 67 to 673 1 to 607       607/607
(100 %)
0 diff
(100 %id)
DB174192 kidney, tumor tissue .h 67 to 632 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
CR746901 eye, retinoblastoma .h 68 to 590 1 to 523       523/523
(100 %)
4 diff
(99.3 %id)
BG115377 duodenal adenocarcinoma, cell line, small intestine .h 70 to 706 1 to 641       641/957
(66 %)
15 diff
(98.5 %id)
CN399670 embryonic stem cells, DMSO-treated H9 cellline .h 82 to 666 1 to 585       585/585
(100 %)
1 diff
(99.9 %id)
CN399665 embryonic stem cells, cell lines H1, H7, andH9 .h 84 to 480 137 to 533       397/533
(74 %)
1 diff
(99.9 %id)
DA104663 cerebellum .h 87 to 630 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
DA378679 thalamus .h 88 to 659 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
TI_159723819   .h 106 to 1106 1065 to 78   AAA   988/1051
(94 %)
10 diff
(99.1 %id)
CN399663 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .h 108 to 718 1 to 611       611/611
(100 %)
1 diff
(99.9 %id)
TI_153959093   .h 155 to 663 86 to 598   fully sequenced, AAA   513/513
(100 %)
9 diff
(98.3 %id)
CN399662 embryonic stem cells, DMSO-treated H9 cellline .h 172 to 633 1 to 462       462/462
(100 %)
0 diff
(100 %id)
AA313721 colon .h 223 to 624 1 to 402       402/402
(100 %)
1 diff
(99.8 %id)
AA129007   .h 305 to 699 1 to 395       395/395
(100 %)
2 diff
(99.5 %id)
CB242806 Human Lung Epithelial cells, lung .h 370 to 1106 754 to 19   AAA   736/739
(99 %)
3 diff
(99.6 %id)
AI934883 anaplastic oligodendroglioma, brain .h 375 to 812 438 to 1       438/438
(100 %)
2 diff
(99.6 %id)
AI828544 anaplastic oligodendroglioma, brain .h 413 to 1106 694 to 1       694/701
(99 %)
5 diff
(99.3 %id)
AI870665 anaplastic oligodendroglioma, brain .h 466 to 1106 641 to 1       641/641
(100 %)
2 diff
(99.7 %id)
BM893870 Islets of Langerhans, Pancreas .h 549 to 701 155 to 3   fully sequenced,   153/155
(98 %)
0 diff
(100 %id)
AI571195 anaplastic oligodendroglioma, brain .h 559 to 1106 547 to 1       547/547
(100 %)
3 diff
(99.5 %id)
BM692783 eye, Retina Foveal and Macular .h 597 to 1102 1 to 506   fully sequenced,   506/506
(100 %)
1 diff
(99.9 %id)
TI_151742317   .h 633 to 1107 591 to 117   fully sequenced,   475/481
(98 %)
7 diff
(98.6 %id)
AI096602 brain, glioblastoma (pooled) .h 640 to 1107 468 to 1       468/468
(100 %)
0 diff
(100 %id)
DB565620 hypothalamus .h 646 to 1104 1 to 459     Submitted on the opposite strand 459/461
(99 %)
3 diff
(99.4 %id)
AA740457 2 pooled tumors (clear cell type), Kidney .h 676 to 1109 434 to 1       434/434
(100 %)
0 diff
(100 %id)
D80025 brain .h 704 to 1085 382 to 1       382/382
(100 %)
2 diff
(99.5 %id)
AI500638 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .h 784 to 1114 341 to 11   AAA   331/331
(100 %)
0 diff
(100 %id)
BM671342 eye, Retina Foveal and Macular .h 869 to 1106 256 to 19   fully sequenced, AAA   238/238
(100 %)
0 diff
(100 %id)
BM687381 eye, optic nerve .i 1 to 503 9 to 512   tiling clone, fully sequenced,   504/512
(98 %)
1 diff
(99.9 %id)
BM672516 eye, optic nerve .i 452 to 788 355 to 19   tiling clone, fully sequenced, AAA   337/337
(100 %)
0 diff
(100 %id)
AK124809 caudate nucleus .j-u 1 to 2977 2 to 2977 exact tiling clone, available from FLJ,   2977/2977
(100 %)
9 diff
(99.7 %id)
DA262882 caudate nucleus .j-u 1 to 550 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
BU947363 insulinoma, Pancreas .j-u 160 to 353 8 to 201       194/201
(96 %)
0 diff
(100 %id)
CB162658 Liver .j-u 197 to 783 1 to 586       586/586
(100 %)
1 diff
(99.9 %id)
AW003220 pooled germ cell tumors .j-u 499 to 1153 656 to 1       656/656
(100 %)
2 diff
(99.7 %id)
AW665723 pooled .j-u 517 to 1152 636 to 1       636/636
(100 %)
1 diff
(99.9 %id)
AW294946   .j-u 866 to 1153 305 to 18   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 288/297
(96 %)
0 diff
(100 %id)
AI763005 2 pooled tumors (clear cell type), Kidney .j-u 877 to 1157 282 to 2       281/282
(99 %)
0 diff
(100 %id)
AK127404 thalamus .j-u 953 to 2977 1 to 2019   tiling clone, available from FLJ,   2019/2019
(100 %)
17 diff
(99.2 %id)
DA379391 thalamus .j-u 954 to 1512 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB306740 caudate nucleus .j-u 2438 to 2977 540 to 1       540/540
(100 %)
3 diff
(99.5 %id)
BG491545 amelanotic melanoma, cell line, skin .k-u 1 to 626 7 to 633 exact tiling clone, fully sequenced, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 633/633
(100 %)
1 diff
(99.9 %id)
BG491944 amelanotic melanoma, cell line, skin .k-u 1 to 575 581 to -5 exact tiling clone, fully sequenced, Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 581/581
(100 %)
4 diff
(99.4 %id)
TI_151730916   .k-u 115 to 626 592 to 81   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 512/940
(54 %)
6 diff
(99.4 %id)
BQ186031 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .k-u 124 to 626 1 to 503   fully sequenced, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 503/503
(100 %)
1 diff
(99.9 %id)
CK299202 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .k-u 478 to 641 167 to 1   fully sequenced, Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 167/167
(100 %)
2 diff
(98.9 %id)
BJ992854.
matches multiple genes
hepatoblastoma .l 1 to 418 7 to 424     also hits gene farblubu 424/424
(100 %)
1 diff
(99.8 %id)
BJ993504 hepatoblastoma .l 1 to 594 7 to 600   tiling clone,   600/600
(100 %)
1 diff
(99.9 %id)
BJ993505 hepatoblastoma .l 1651 to 2175 525 to 1   tiling clone,   525/525
(100 %)
0 diff
(100 %id)
BE926695 breast .m 1 to 1892 562 to 20   tiling clone, Suspected internal deletion 543/563
(96 %)
22 diff
(96.1 %id)
AA258340 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .n 1 to 390 1 to 390 exact tiling clone,   390/390
(100 %)
0 diff
(100 %id)
AA258418 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .n 1 to 405 1 to 406 N28K     406/406
(100 %)
2 diff
(99.6 %id)
BE350766 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .n 238 to 704 467 to 1   tiling clone,   467/481
(97 %)
1 diff
(99.8 %id)
AV731773 hypothalamus .n 334 to 981 647 to 1   tiling clone, Submitted on the opposite strand 647/664
(97 %)
39 diff
(94.2 %id)
AA258391 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .n 801 to 1215 415 to 1   tiling clone,   415/415
(100 %)
0 diff
(100 %id)
DB549192.
matches multiple genes
hippocampus .o-u 1 to 455 455 to 1   tiling clone, also hits gene TOM1L1 455/455
(100 %)
0 diff
(100 %id)
BP425704 small intestine .o-u 134 to 402 270 to 1       270/270
(100 %)
2 diff
(99.3 %id)
AI285934 pooled .o-u 172 to 655 483 to 1 exact     483/483
(100 %)
3 diff
(99.4 %id)
AI280255 placenta .o-u 259 to 662 409 to 6 exact tiling clone,   404/409
(98 %)
0 diff
(100 %id)
AI193602 lung .p 1 to 655 654 to 1 R2X T6Q E7K I8L A18R ... tiling clone,   654/654
(100 %)
6 diff
(99.1 %id)
DB545984 hippocampus .p 201 to 653 1 to 449     Submitted on the opposite strand 449/449
(100 %)
5 diff
(98.9 %id)
AI803257   .p 208 to 661 458 to 5   tiling clone,   454/458
(99 %)
0 diff
(100 %id)
AI570176 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .q 1 to 653 651 to 1 exact tiling clone,   651/651
(100 %)
7 diff
(99.0 %id)
DB320945.
matches multiple genes
Kidney .q 89 to 653 566 to 1 exact tiling clone, also hits gene CDNF 566/566
(100 %)
1 diff
(99.9 %id)
AA643786   .r-u 1 to 352 1 to 352 S2F T51A tiling clone,   352/352
(100 %)
5 diff
(98.6 %id)
AA639896   .r-u 1 to 402 1 to 402 S2F T51A tiling clone,   402/402
(100 %)
6 diff
(98.6 %id)
T77183.
matches multiple genes
whole brain P1.a-u 349 to 749 30 to 441   tiling clone, also hits gene COX11P1 412/447
(92 %)
34 diff
(92.4 %id)
BX504276   Gene COX11, variant not shown         This clone was ignored    
AV645561 corresponding non cancerous liver tissue Gene COX11, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV714393   Gene COX11, variant not shown         Suspected internal deletion, this clone was ignored    
DB317399 brain Gene COX11, variant not shown         This clone was ignored    
DA524856 brain Gene COX11, variant not shown       capped This clone was ignored    
BF817995 colon_ins Gene COX11, variant not shown         This clone was ignored    
CN399666 embryonic stem cells, DMSO-treated H9 cellline Gene COX11, variant not shown         This clone was ignored    
DB539738.
matches multiple genes
hippocampus Gene COX11, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene TOM1L1    
DB539738.
matches multiple genes
hippocampus Gene TOM1L1, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene TOM1L1    
DB471041.
matches multiple genes
hippocampus Gene COX11, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene TOM1L1    
DB471041.
matches multiple genes
hippocampus Gene TOM1L1, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene TOM1L1    
H25009 breast Gene COX11, variant not shown       fully sequenced, This clone was ignored    
H25010 breast Gene COX11, variant not shown       fully sequenced, This clone was ignored    
H27043 breast Gene COX11, variant not shown         This clone was ignored    
H51293 breast Gene COX11, variant not shown       fully sequenced, This clone was ignored    
H51885 breast Gene COX11, variant not shown       fully sequenced, This clone was ignored    
N95758 lung Gene COX11, variant not shown         Suspected internal deletion, this clone was ignored    
W24852 lung Gene COX11, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k-u, .l, .m, .n, .o-u, .p, .q, .r-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C