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Gene COL9A3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
329 supporting clones for gene COL9A3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC011705 Skin, melanotic melanoma. .a 1 to 2410 1 to 2410 exact tiling clone, available from MGC, AAA   2410/2410
(100 %)
1 diff
(100.0 %id)
CN266635 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1 to 148 1 to 148       148/148
(100 %)
2 diff
(98.7 %id)
NM_001853.3   .a 1 to 2485 1 to 2485 exact RefSeq,   2485/2485
(100 %)
0 diff
(100 %id)
BE730586 melanotic melanoma, skin .a 3 to 555 41 to 586       548/586
(93 %)
16 diff
(97.3 %id)
L41162 cartilage .a 4 to 2483 1 to 2480       2480/2480
(100 %)
15 diff
(99.4 %id)
CN367728 embryonic stem cells, cell lines H1, H7, andH9 .a 9 to 577 1 to 569       569/569
(100 %)
6 diff
(99.0 %id)
AA057592 eye, retina .a 81 to 363 17 to 297     Submitted on the opposite strand 281/297
(94 %)
10 diff
(96.7 %id)
AA017526 eye, retina .a 83 to 373 21 to 306     Submitted on the opposite strand 286/334
(85 %)
11 diff
(96.8 %id)
BU848705 ovary, teratocarcinoma, cell line .a 133 to 902 1 to 776       776/897
(86 %)
10 diff
(98.9 %id)
BQ278043 ovary, teratocarcinoma, cell line .a 142 to 654 1 to 516       516/1135
(45 %)
18 diff
(98.5 %id)
CA397705 eye, RPE/choroid .a 294 to 803 1 to 510       510/510
(100 %)
0 diff
(100 %id)
BQ440712 melanotic melanoma, skin .a 328 to 1057 1 to 733       733/929
(78 %)
4 diff
(99.6 %id)
BE281620 choriocarcinoma, placenta .a 366 to 1029 41 to 708       666/708
(94 %)
20 diff
(97.2 %id)
BE903168 choriocarcinoma, placenta .a 369 to 1012 55 to 704       650/747
(87 %)
23 diff
(97.0 %id)
BC007574 Placenta, choriocarcinoma .a 371 to 2418 1 to 2048   available from MGC, AAA   2048/2048
(100 %)
1 diff
(100.0 %id)
AJ713704 bone marrow .a 373 to 598 226 to 1     Submitted on the opposite strand 226/226
(100 %)
0 diff
(100 %id)
BQ943766 large cell carcinoma, lung .a 373 to 1057 1 to 690       690/983
(70 %)
10 diff
(99.0 %id)
BE388956 endometrium, adenocarcinoma cell line, uterus .a 395 to 1057 1 to 648       650/670
(97 %)
37 diff
(94.5 %id)
BG480935 choriocarcinoma, placenta .a 410 to 1130 1 to 719       721/719
(100 %)
17 diff
(97.7 %id)
BG335793 choriocarcinoma, placenta .a 415 to 958 11 to 543       533/726
(73 %)
42 diff
(94.3 %id)
BG773691 choriocarcinoma, placenta .a 415 to 1056 11 to 649       639/651
(98 %)
15 diff
(97.7 %id)
BE735298 choriocarcinoma, placenta .a 420 to 1165 52 to 798       747/1140
(65 %)
34 diff
(97.1 %id)
BE733492 choriocarcinoma, placenta .a 426 to 1165 1 to 729       733/1048
(69 %)
18 diff
(98.3 %id)
BE731703 choriocarcinoma, placenta .a 426 to 1165 1 to 735       735/880
(83 %)
6 diff
(99.4 %id)
BE900403 choriocarcinoma, placenta .a 427 to 1164 1 to 728       730/729
(100 %)
44 diff
(94.0 %id)
BE901295 choriocarcinoma, placenta .a 427 to 1215 1 to 766       766/948
(80 %)
35 diff
(96.4 %id)
BE280918 choriocarcinoma, placenta .a 429 to 1012 1 to 585       585/611
(95 %)
25 diff
(96.0 %id)
CN367727 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 479 to 700 1 to 222       222/222
(100 %)
2 diff
(99.1 %id)
BE733441 choriocarcinoma, placenta .a 480 to 1114 51 to 688       638/950
(67 %)
15 diff
(98.5 %id)
CN367726 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 481 to 776 51 to 346       296/346
(85 %)
6 diff
(98.3 %id)
BE387543 melanotic melanoma, skin .a 481 to 1145 46 to 706       661/707
(93 %)
14 diff
(98.1 %id)
BE275887 melanotic melanoma, skin .a 496 to 1165 1 to 683       683/729
(93 %)
32 diff
(95.7 %id)
BE386098 melanotic melanoma, skin .a 497 to 1165 1 to 662       662/680
(97 %)
11 diff
(98.4 %id)
CA392064 eye, RPE/choroid .a 530 to 990 1 to 461       461/461
(100 %)
0 diff
(100 %id)
BU189363 melanotic melanoma, skin .a 535 to 1165 1 to 632       632/849
(74 %)
4 diff
(99.6 %id)
BI545380 brain, hippocampus .a 549 to 1247 1 to 698       698/698
(100 %)
10 diff
(98.6 %id)
TI_44165457   .a 553 to 1247 134 to 827       694/827
(83 %)
12 diff
(98.6 %id)
DR158366 human embryonic stem cells differentiated toan early endodermal cell type .a 575 to 1262 1 to 688       688/688
(100 %)
0 diff
(100 %id)
BU553568 ovary, teratocarcinoma, cell line .a 591 to 1291 1 to 704       704/903
(77 %)
11 diff
(98.8 %id)
BU845715 ovary, teratocarcinoma, cell line .a 591 to 1413 1 to 834       832/920
(90 %)
16 diff
(98.3 %id)
BE409542 choriocarcinoma, placenta .a 600 to 1328 1 to 725       725/886
(81 %)
26 diff
(97.1 %id)
BG473687 eye, retinoblastoma .a 608 to 1101 1 to 493       493/493
(100 %)
4 diff
(99.2 %id)
BE734174 choriocarcinoma, placenta .a 628 to 1405 1 to 780       780/853
(91 %)
13 diff
(98.5 %id)
BE279023 choriocarcinoma, placenta .a 629 to 1263 1 to 628       628/681
(92 %)
20 diff
(97.1 %id)
CR619945 fetal brain .a 632 to 2391 1 to 1760       1760/1760
(100 %)
0 diff
(100 %id)
AL539445 brain, fetal brain .a 632 to 1593 1 to 959   fully sequenced,   959/959
(100 %)
6 diff
(99.4 %id)
BE410712 choriocarcinoma, placenta .a 632 to 1259 61 to 680       620/790
(78 %)
12 diff
(98.5 %id)
BM171776 cervix .a 633 to 1131 1 to 499       499/499
(100 %)
6 diff
(98.8 %id)
BG335445 choriocarcinoma, placenta .a 634 to 1372 1 to 742       742/1043
(71 %)
16 diff
(98.5 %id)
BG335912 choriocarcinoma, placenta .a 634 to 1291 1 to 654       654/948
(68 %)
18 diff
(98.2 %id)
BI090446 cervix .a 634 to 1079 1 to 446       446/446
(100 %)
1 diff
(99.8 %id)
BE733843 choriocarcinoma, placenta .a 660 to 1321 1 to 653       653/653
(100 %)
10 diff
(98.5 %id)
BE900761 choriocarcinoma, placenta .a 660 to 1059 1 to 401       401/401
(100 %)
3 diff
(99.3 %id)
CA394266 eye, RPE/choroid .a 689 to 1158 1 to 470       470/470
(100 %)
1 diff
(99.8 %id)
CD519049 White Matter .a 768 to 1372 26 to 636       611/789
(77 %)
25 diff
(96.9 %id)
BG824708 adenocarcinoma cell line, colon .a 848 to 1604 1 to 780       777/786
(98 %)
33 diff
(95.9 %id)
BE409733 choriocarcinoma, placenta .a 922 to 1604 7 to 689       683/732
(93 %)
8 diff
(99.0 %id)
BG477628 melanotic melanoma, skin .a 923 to 1658 1 to 732       732/735
(99 %)
23 diff
(96.9 %id)
BU172203 melanotic melanoma, skin .a 932 to 1548 23 to 639       617/919
(67 %)
21 diff
(97.8 %id)
BE409076 choriocarcinoma, placenta .a 942 to 1544 1 to 594       594/782
(75 %)
17 diff
(97.9 %id)
BE389539 endometrium, adenocarcinoma cell line, uterus .a 943 to 1454 1 to 512       512/512
(100 %)
3 diff
(99.5 %id)
BE388106 endometrium, adenocarcinoma cell line, uterus .a 943 to 1552 1 to 607       607/610
(99 %)
7 diff
(98.9 %id)
BE386540 melanotic melanoma, skin .a 943 to 1610 1 to 664       664/748
(88 %)
8 diff
(99.0 %id)
BE384879 melanotic melanoma, skin .a 943 to 1655 1 to 709       709/750
(94 %)
19 diff
(97.5 %id)
BE407851 choriocarcinoma, placenta .a 943 to 1610 1 to 668       668/773
(86 %)
9 diff
(98.9 %id)
BE388141 endometrium, adenocarcinoma cell line, uterus .a 944 to 1595 1 to 647       647/702
(92 %)
11 diff
(98.5 %id)
CN367730 embryonic stem cells, cell lines H1, H7, andH9 .a 957 to 1190 1 to 234       234/234
(100 %)
0 diff
(100 %id)
BE410593 choriocarcinoma, placenta .a 967 to 1621 8 to 660       653/660
(98 %)
7 diff
(99.0 %id)
BG281718 melanotic melanoma, skin .a 967 to 1677 1 to 719       719/727
(98 %)
17 diff
(97.7 %id)
BG334158 melanotic melanoma, skin .a 967 to 1711 1 to 735       734/751
(97 %)
23 diff
(97.0 %id)
BG476827 melanotic melanoma, skin .a 969 to 1604 1 to 654       653/835
(78 %)
37 diff
(95.6 %id)
BE276449 melanotic melanoma, skin .a 987 to 1552 1 to 575       575/770
(74 %)
15 diff
(98.1 %id)
BE729181 melanotic melanoma, skin .a 987 to 1787 1 to 793       793/830
(95 %)
15 diff
(98.2 %id)
BE407456 choriocarcinoma, placenta .a 988 to 1677 1 to 676       679/679
(100 %)
36 diff
(94.7 %id)
CX784625 human embryonic stem cells .a 991 to 1742 1 to 753       753/757
(99 %)
4 diff
(99.5 %id)
BE892203 melanotic melanoma, skin .a 1103 to 1786 1 to 688       688/985
(69 %)
19 diff
(98.1 %id)
BE278671 choriocarcinoma, placenta .a 1111 to 1741 1 to 629       629/692
(90 %)
11 diff
(98.5 %id)
BE732592 choriocarcinoma, placenta .a 1111 to 1865 1 to 749       749/828
(90 %)
21 diff
(97.5 %id)
BG468454 adenocarcinoma cell line, colon .a 1130 to 1991 1 to 855       855/859
(99 %)
37 diff
(95.7 %id)
DA571660 whole embryo, mainly head .a 1255 to 1806 172 to 722   capped   551/721
(76 %)
9 diff
(98.8 %id)
BQ682908 melanotic melanoma, cell line, skin .a 1300 to 1988 15 to 711       697/1031
(67 %)
26 diff
(97.5 %id)
BU184971 melanotic melanoma, cell line, skin .a 1302 to 2116 1 to 834       834/916
(91 %)
35 diff
(96.2 %id)
AI459547 brain, meningioma .a 1307 to 1729 423 to 1       423/423
(100 %)
1 diff
(99.8 %id)
BE407772 choriocarcinoma, placenta .a 1356 to 1855 1 to 500       500/500
(100 %)
2 diff
(99.6 %id)
BE731782 choriocarcinoma, placenta .a 1356 to 2168 1 to 805       805/1117
(72 %)
27 diff
(97.6 %id)
BE901867 choriocarcinoma, placenta .a 1356 to 2162 1 to 798       798/902
(88 %)
39 diff
(95.7 %id)
BE733060 choriocarcinoma, placenta .a 1359 to 2168 1 to 799       799/972
(82 %)
36 diff
(96.3 %id)
BG765573 melanotic melanoma, high MDR (cell line), skin .a 1362 to 1979 1 to 627       625/684
(91 %)
32 diff
(95.4 %id)
BF814244 colon_ins .a 1372 to 1606 44 to 279       236/290
(81 %)
4 diff
(98.7 %id)
BG333627 melanotic melanoma, skin .a 1427 to 2179 1 to 755       755/932
(81 %)
25 diff
(97.4 %id)
BF814246 colon_ins .a 1443 to 1601 183 to 20     Submitted on the opposite strand 164/184
(89 %)
8 diff
(95.7 %id)
BE734681 choriocarcinoma, placenta .a 1448 to 2231 27 to 793       767/886
(86 %)
25 diff
(97.2 %id)
BE734823 choriocarcinoma, placenta .a 1451 to 2199 38 to 772       737/772
(95 %)
23 diff
(97.1 %id)
BF814253 colon_ins .a 1469 to 1632 167 to 1     Submitted on the opposite strand 167/172
(97 %)
9 diff
(94.8 %id)
BE890962 melanotic melanoma, skin .a 1543 to 2182 1 to 642       642/643
(99 %)
10 diff
(98.5 %id)
BF921798 nervous_tumor .a 1561 to 1848 288 to 1     Submitted on the opposite strand 288/289
(99 %)
13 diff
(95.6 %id)
CR611329 fetal brain .a 1563 to 2459 1 to 897   tiling clone,   897/897
(100 %)
0 diff
(100 %id)
AL567856 brain, fetal brain .a 1563 to 2391 829 to 1   fully sequenced,   829/829
(100 %)
5 diff
(99.4 %id)
AL536760 brain, fetal brain .a 1563 to 2444 1 to 883   fully sequenced,   883/883
(100 %)
3 diff
(99.7 %id)
BQ721278 sympathetic trunk .a 1567 to 2321 1 to 757       757/938
(80 %)
19 diff
(98.0 %id)
X91013 hyaline cartilage .a 1567 to 2004 1 to 438       438/438
(100 %)
8 diff
(98.2 %id)
BG746515 adenocarcinoma cell line, colon .a 1599 to 2505 1 to 901       901/907
(99 %)
28 diff
(97.0 %id)
TI_154111669   .a 1664 to 2410 830 to 95   AAA   736/940
(78 %)
13 diff
(98.7 %id)
CA448491 Chondrosarcoma, Left Pelvis .a 1684 to 2410 737 to 19   AAA   719/719
(100 %)
10 diff
(98.7 %id)
CN367729 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1699 to 2263 1 to 565       565/565
(100 %)
1 diff
(99.9 %id)
BX281714 melanotic melanoma, skin .a 1742 to 2233 1 to 492       492/492
(100 %)
6 diff
(98.8 %id)
BQ421080 melanotic melanoma, skin .a 1743 to 2483 1 to 741       741/913
(81 %)
13 diff
(98.6 %id)
BF128957 B-cells, primary B-cells from tonsils (cell line) .a 1752 to 2340 1 to 586       586/586
(100 %)
8 diff
(98.7 %id)
AL536759 brain, fetal brain .a 1759 to 2459 703 to 1   fully sequenced,   703/703
(100 %)
4 diff
(99.5 %id)
BM710049 eye, optic nerve .a 1778 to 2078 1 to 301   fully sequenced,   301/301
(100 %)
0 diff
(100 %id)
BQ181740 Knee, Osteoarthritic Cartilage .a 1779 to 2418 658 to 19   AAA   640/640
(100 %)
0 diff
(100 %id)
AV752308 Pituitary .a 1779 to 2410 1 to 635       635/644
(98 %)
31 diff
(95.2 %id)
AW166767 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 1788 to 2418 627 to 1       627/639
(98 %)
14 diff
(97.9 %id)
BQ006213 Chondrosarcoma, Left Pelvis .a 1792 to 2484 709 to 17   AAA   693/700
(99 %)
1 diff
(99.9 %id)
BU856355 ovary, teratocarcinoma, cell line .a 1807 to 2418 1 to 612   AAA   612/612
(100 %)
7 diff
(98.9 %id)
BM706704 eye, optic nerve .a 1817 to 2485 1 to 669   AAA   669/669
(100 %)
8 diff
(98.9 %id)
DB522981 testis .a 1824 to 2277 1 to 454     Submitted on the opposite strand 454/455
(99 %)
2 diff
(99.6 %id)
DB519277 testis .a 1850 to 2277 1 to 428     Submitted on the opposite strand 428/429
(99 %)
2 diff
(99.6 %id)
CA413116 Chondrosarcoma Grade II, Left Pelvis .a 1861 to 2484 642 to 19   AAA   624/625
(99 %)
0 diff
(100 %id)
AU146172 whole embryo, mainly head .a 1862 to 2418 558 to 1       558/562
(99 %)
8 diff
(98.6 %id)
BQ774455 Chondrosarcoma Grade II, Left Pelvis .a 1862 to 2418 575 to 19   AAA   557/566
(98 %)
2 diff
(99.7 %id)
AW515667 pooled germ cell tumors .a 1879 to 2411 540 to 9       532/540
(98 %)
0 diff
(100 %id)
AW590298 pooled germ cell tumors .a 1879 to 2418 542 to 1       542/542
(100 %)
18 diff
(96.7 %id)
BE504671 pooled germ cell tumors .a 1879 to 2418 540 to 1       540/540
(100 %)
11 diff
(98.0 %id)
AW197607 pooled germ cell tumors .a 1912 to 2418 507 to 1       507/507
(100 %)
7 diff
(98.7 %id)
AI671202 pooled germ cell tumors .a 1918 to 2418 500 to 1       500/500
(100 %)
8 diff
(98.4 %id)
AA496786   .a 1921 to 2410 489 to 1       489/489
(100 %)
3 diff
(99.4 %id)
AA496735   .a 1926 to 2207 80 to 361       282/361
(78 %)
11 diff
(97.0 %id)
AI004345   .a 1929 to 2419 493 to 3       491/495
(99 %)
0 diff
(100 %id)
AI371707   .a 1933 to 2419 491 to 4       488/491
(99 %)
0 diff
(100 %id)
AI741089 pooled .a 1966 to 2410 481 to 37   AAA   445/445
(100 %)
11 diff
(97.6 %id)
BE157881 head_neck .a 1976 to 2123 1 to 148       148/148
(100 %)
9 diff
(94.0 %id)
BF350840 head_neck .a 1976 to 2123 1 to 146       146/146
(100 %)
8 diff
(94.6 %id)
AW384253 head_neck .a 1977 to 2123 1 to 146       146/146
(100 %)
11 diff
(92.5 %id)
AW384254 head_neck .a 1977 to 2123 1 to 146       146/146
(100 %)
9 diff
(93.9 %id)
AW580116 head_neck .a 1977 to 2134 1 to 156       156/168
(92 %)
6 diff
(96.5 %id)
BE157873 head_neck .a 1977 to 2094 1 to 123       123/123
(100 %)
10 diff
(91.9 %id)
BE157879 head_neck .a 1977 to 2123 1 to 146       146/146
(100 %)
10 diff
(93.2 %id)
BF350821 head_neck .a 1977 to 2123 1 to 149       149/149
(100 %)
12 diff
(92.0 %id)
AW580081 head_neck .a 1978 to 2123 1 to 145       145/145
(100 %)
9 diff
(93.8 %id)
AW606436 head_neck .a 1978 to 2120 1 to 144       144/144
(100 %)
8 diff
(94.5 %id)
AW606449 head_neck .a 1978 to 2123 1 to 144       144/144
(100 %)
7 diff
(95.2 %id)
BE157887 head_neck .a 1978 to 2123 1 to 145       145/145
(100 %)
5 diff
(96.6 %id)
AW384256 head_neck .a 1980 to 2123 1 to 143       143/143
(100 %)
6 diff
(95.9 %id)
AW580142 head_neck .a 1980 to 2123 6 to 148       143/148
(96 %)
14 diff
(90.6 %id)
AW606428 head_neck .a 1980 to 2123 6 to 148       143/148
(96 %)
14 diff
(90.6 %id)
BE157869 head_neck .a 1980 to 2134 6 to 161       156/173
(90 %)
13 diff
(92.5 %id)
BQ349183 head_neck .a 1980 to 2134 5 to 158       154/163
(94 %)
10 diff
(93.9 %id)
AW580086 head_neck .a 1981 to 2132 1 to 151       151/151
(100 %)
12 diff
(92.1 %id)
AW580102 head_neck .a 1981 to 2123 1 to 139       139/139
(100 %)
10 diff
(92.9 %id)
AW580167 head_neck .a 1981 to 2123 1 to 143       143/143
(100 %)
4 diff
(97.3 %id)
AW606471 head_neck .a 1981 to 2123 6 to 150       145/150
(96 %)
6 diff
(96.0 %id)
AW606491 head_neck .a 1981 to 2123 6 to 147       142/147
(96 %)
6 diff
(96.0 %id)
BE157890 head_neck .a 1981 to 2123 14 to 156       143/156
(91 %)
6 diff
(96.2 %id)
BE157893 head_neck .a 1981 to 2123 1 to 142       142/142
(100 %)
4 diff
(97.2 %id)
BQ349118 head_neck .a 1981 to 2123 6 to 146       141/146
(96 %)
6 diff
(95.9 %id)
AW384238 head_neck .a 1982 to 2123 25 to 167       143/167
(85 %)
8 diff
(95.3 %id)
AW580066 head_neck .a 1982 to 2123 26 to 165       140/165
(84 %)
9 diff
(94.6 %id)
AW580166 head_neck .a 1982 to 2123 1 to 143       143/143
(100 %)
9 diff
(93.8 %id)
BQ349024 head_neck .a 1982 to 2123 1 to 140       140/140
(100 %)
14 diff
(90.0 %id)
AW580095 head_neck .a 1983 to 2132 6 to 154       149/154
(96 %)
9 diff
(94.2 %id)
AW580111 head_neck .a 1984 to 2123 13 to 152       140/152
(92 %)
6 diff
(96.1 %id)
AW580112 head_neck .a 1984 to 2123 1 to 138       138/138
(100 %)
8 diff
(94.3 %id)
AW580124 head_neck .a 1984 to 2123 1 to 140       140/140
(100 %)
4 diff
(97.2 %id)
AW606438 head_neck .a 1984 to 2123 1 to 139       139/139
(100 %)
9 diff
(93.6 %id)
AW384145 head_neck .a 1985 to 2123 1 to 137       137/137
(100 %)
4 diff
(97.1 %id)
AW384237 head_neck .a 1985 to 2123 19 to 156       138/156
(88 %)
6 diff
(96.2 %id)
AW580154 head_neck .a 1985 to 2123 9 to 146       138/146
(94 %)
3 diff
(98.0 %id)
AW580155 head_neck .a 1985 to 2084 11 to 110       100/110
(90 %)
6 diff
(94.6 %id)
AW606497 head_neck .a 1985 to 2123 1 to 138       138/138
(100 %)
6 diff
(95.7 %id)
AW384242 head_neck .a 1987 to 2123 1 to 139       139/139
(100 %)
8 diff
(94.3 %id)
AW606458 head_neck .a 1987 to 2123 8 to 142       135/142
(95 %)
6 diff
(95.8 %id)
AW606463 head_neck .a 1987 to 2123 9 to 141       133/141
(94 %)
6 diff
(95.8 %id)
AW606490 head_neck .a 1987 to 2134 6 to 151       146/151
(96 %)
6 diff
(96.1 %id)
BE157888 head_neck .a 1987 to 2123 1 to 135       135/135
(100 %)
2 diff
(98.6 %id)
BF350847 head_neck .a 1987 to 2123 12 to 148       137/148
(92 %)
6 diff
(96.0 %id)
AW384258 head_neck .a 1993 to 2134 1 to 144       144/176
(81 %)
5 diff
(97.2 %id)
AW580080 head_neck .a 1993 to 2110 1 to 118       118/118
(100 %)
5 diff
(95.8 %id)
AW580110 head_neck .a 1993 to 2132 8 to 146       139/147
(94 %)
5 diff
(96.6 %id)
BE157868 head_neck .a 1993 to 2123 13 to 142       130/142
(91 %)
6 diff
(95.8 %id)
BE157874 head_neck .a 1993 to 2123 9 to 139       131/139
(94 %)
6 diff
(95.7 %id)
AW606439 head_neck .a 1994 to 2123 1 to 132       132/132
(100 %)
4 diff
(97.0 %id)
AW606467 head_neck .a 1994 to 2113 1 to 115       115/115
(100 %)
9 diff
(92.2 %id)
AW384148 head_neck .a 1995 to 2123 17 to 144       128/144
(88 %)
6 diff
(95.9 %id)
AW384239 head_neck .a 1995 to 2123 18 to 148       131/148
(88 %)
6 diff
(96.0 %id)
AW384245 head_neck .a 1995 to 2123 1 to 128       128/128
(100 %)
3 diff
(97.7 %id)
AW580126 head_neck .a 1995 to 2123 1 to 129       129/129
(100 %)
2 diff
(98.5 %id)
AW580148 head_neck .a 1995 to 2093 1 to 101       101/106
(95 %)
6 diff
(94.4 %id)
AW606440 head_neck .a 1995 to 2116 17 to 137       121/137
(88 %)
6 diff
(95.7 %id)
AW606446 head_neck .a 1995 to 2132 31 to 166       136/166
(81 %)
8 diff
(95.2 %id)
AW606474 head_neck .a 1995 to 2123 17 to 145       129/145
(88 %)
6 diff
(95.9 %id)
BQ349184 head_neck .a 1995 to 2112 7 to 122       116/122
(95 %)
9 diff
(92.7 %id)
AW606457 head_neck .a 1996 to 2123 1 to 127       127/127
(100 %)
1 diff
(99.3 %id)
AW606476 head_neck .a 1996 to 2102 1 to 103       103/105
(98 %)
8 diff
(92.4 %id)
BF350835 head_neck .a 1996 to 2123 1 to 128       128/128
(100 %)
6 diff
(95.4 %id)
BF350836 head_neck .a 1996 to 2133 1 to 140       140/166
(84 %)
8 diff
(95.2 %id)
AW580121 head_neck .a 1997 to 2123 1 to 127       127/127
(100 %)
1 diff
(99.3 %id)
AW580170 head_neck .a 1997 to 2123 1 to 126       126/126
(100 %)
2 diff
(98.5 %id)
AW606441 head_neck .a 1997 to 2123 1 to 126       126/126
(100 %)
3 diff
(97.7 %id)
AW606453 head_neck .a 1997 to 2106 1 to 109       109/109
(100 %)
3 diff
(97.3 %id)
AW606480 head_neck .a 1997 to 2123 1 to 129       129/129
(100 %)
3 diff
(97.7 %id)
AW606485 head_neck .a 1997 to 2123 1 to 125       125/125
(100 %)
3 diff
(97.6 %id)
BE157870 head_neck .a 1997 to 2123 1 to 130       130/130
(100 %)
4 diff
(97.0 %id)
BE157872 head_neck .a 1997 to 2123 1 to 127       127/127
(100 %)
3 diff
(97.7 %id)
BF350832 head_neck .a 1997 to 2123 1 to 128       128/128
(100 %)
4 diff
(96.9 %id)
BF350844 head_neck .a 1997 to 2129 1 to 130       130/130
(100 %)
4 diff
(97.0 %id)
AW580078 head_neck .a 2007 to 2134 13 to 137       125/154
(81 %)
8 diff
(94.9 %id)
AW580088 head_neck .a 2007 to 2123 10 to 126       117/126
(92 %)
6 diff
(95.3 %id)
AW580097 head_neck .a 2007 to 2120 12 to 127       116/127
(91 %)
6 diff
(95.3 %id)
AW580137 head_neck .a 2007 to 2129 1 to 122       122/122
(100 %)
7 diff
(94.3 %id)
BE157895 head_neck .a 2007 to 2123 1 to 118       118/118
(100 %)
3 diff
(97.5 %id)
BQ349224 head_neck .a 2007 to 2104 11 to 107       97/107
(90 %)
9 diff
(91.6 %id)
AW363428 colon .a 2009 to 2332 1 to 325       325/325
(100 %)
7 diff
(97.9 %id)
AW363426 colon .a 2012 to 2332 1 to 322       322/322
(100 %)
5 diff
(98.5 %id)
DV461223 cochlea, ear .a 2028 to 2314 1 to 287       287/287
(100 %)
9 diff
(96.9 %id)
DV460488 cochlea, ear .a 2029 to 2315 4 to 290       287/290
(98 %)
6 diff
(98.0 %id)
CN367731 embryonic stem cells, DMSO-treated H9 cellline .a 2030 to 2418 1 to 389   AAA   389/389
(100 %)
5 diff
(98.8 %id)
AA029547 heart .a 2031 to 2216 1 to 186   fully sequenced,   186/186
(100 %)
1 diff
(99.5 %id)
DV461987 cochlea, ear .a 2032 to 2311 1 to 280       280/282
(99 %)
2 diff
(99.3 %id)
AI638228 pooled germ cell tumors .a 2037 to 2419 387 to 5       383/387
(98 %)
0 diff
(100 %id)
BE550290 pooled germ cell tumors .a 2037 to 2419 387 to 5       383/387
(98 %)
0 diff
(100 %id)
BM706483 eye, eye anterior segment .a 2041 to 2418 9 to 386       378/386
(97 %)
6 diff
(98.5 %id)
BE274291 melanotic melanoma, skin .a 2045 to 2419 1 to 374       374/374
(100 %)
1 diff
(99.8 %id)
BE274426 melanotic melanoma, skin .a 2045 to 2418 1 to 374       374/374
(100 %)
1 diff
(99.8 %id)
BE276155 melanotic melanoma, skin .a 2045 to 2419 1 to 375       375/376
(99 %)
1 diff
(99.8 %id)
BM671205 eye, optic nerve .a 2048 to 2418 389 to 19   fully sequenced, AAA   371/371
(100 %)
0 diff
(100 %id)
AW021751 cochlea, ear .a 2050 to 2409 8 to 367       360/367
(98 %)
7 diff
(98.1 %id)
BG925555 cartilage .a 2065 to 2403 69 to 408       340/351
(96 %)
6 diff
(98.3 %id)
BE165524 head_neck .a 2084 to 2291 1 to 208       208/208
(100 %)
6 diff
(97.2 %id)
BE165526 head_neck .a 2084 to 2302 1 to 219       219/220
(99 %)
9 diff
(96.0 %id)
CA392063 eye, RPE/choroid .a 2095 to 2418 350 to 27   AAA   324/324
(100 %)
17 diff
(94.8 %id)
AW514515 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 2098 to 2418 322 to 1       322/322
(100 %)
2 diff
(99.4 %id)
AI971475 pooled germ cell tumors .a 2108 to 2410 303 to 1       303/303
(100 %)
7 diff
(97.7 %id)
BF057304 pooled germ cell tumors .a 2108 to 2411 304 to 1       304/304
(100 %)
1 diff
(99.7 %id)
AA480218 colon .a 2113 to 2417 304 to 1       304/304
(100 %)
2 diff
(99.4 %id)
AI653785 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 2166 to 2418 253 to 1       253/253
(100 %)
2 diff
(99.3 %id)
DV460467 cochlea, ear .a 2182 to 2315 1 to 134       134/137
(97 %)
6 diff
(95.7 %id)
DV460309 cochlea, ear .a 2185 to 2315 1 to 131       131/131
(100 %)
8 diff
(93.9 %id)
AA029548 heart .a 2186 to 2417 231 to 1   fully sequenced,   231/231
(100 %)
5 diff
(97.9 %id)
DV459338 cochlea, ear .a 2187 to 2315 7 to 135       129/135
(95 %)
0 diff
(100 %id)
DV460071 cochlea, ear .a 2191 to 2321 1 to 131       131/131
(100 %)
2 diff
(98.5 %id)
DV461006 cochlea, ear .a 2194 to 2315 1 to 122       122/124
(98 %)
1 diff
(99.2 %id)
DV461104 cochlea, ear .a 2219 to 2313 1 to 95       95/95
(100 %)
0 diff
(100 %id)
BF057156 pooled germ cell tumors .a 2221 to 2419 200 to 2       199/200
(99 %)
0 diff
(100 %id)
DV460043 cochlea, ear .a 2221 to 2321 1 to 100       100/100
(100 %)
1 diff
(99.0 %id)
TI_44166962   .b 1 to 694 115 to 804       690/940
(73 %)
21 diff
(97.8 %id)
BI547969 brain, hippocampus .b 5 to 694 1 to 686   tiling clone,   686/822
(83 %)
21 diff
(97.5 %id)
BM471378 melanotic melanoma, skin .b 33 to 695 32 to 697   tiling clone,   666/1069
(62 %)
22 diff
(98.0 %id)
DB493848.
matches multiple genes
hypothalamus .b 41 to 212 1 to 172     also hits gene TCFL5 172/172
(100 %)
0 diff
(100 %id)
DB494752.
matches multiple genes
hypothalamus .b 41 to 212 1 to 172     also hits gene TCFL5 172/172
(100 %)
0 diff
(100 %id)
BQ428067 melanotic melanoma, skin .b 63 to 531 1 to 474       474/1057
(44 %)
15 diff
(98.6 %id)
BF342250 brain, glioblastoma with EGFR amplification .b 551 to 1213 1 to 653   tiling clone,   655/737
(88 %)
34 diff
(95.4 %id)
BE893146 melanotic melanoma, skin .c 1 to 644 1 to 630 L107S R108A G109A P111G G112T ... tiling clone,   634/635
(99 %)
31 diff
(95.2 %id)
BF725173 eye, Iris .c 10 to 567 1 to 559   tiling clone,   559/559
(100 %)
1 diff
(99.9 %id)
CN367725 embryonic stem cells, DMSO-treated H9 cellline .d 1 to 646 1 to 646 exact tiling clone,   646/646
(100 %)
5 diff
(99.3 %id)
BF974743 B-cells, primary B-cells from tonsils (cell line) .e 1 to 696 8 to 693   tiling clone,   693/701
(98 %)
16 diff
(97.8 %id)
CD675479 eye, lens .e 13 to 493 1 to 481       481/481
(100 %)
0 diff
(100 %id)
TI_154188472   .e 32 to 850 120 to 927   tiling clone,   808/905
(89 %)
29 diff
(96.8 %id)
BI334384 cervical carcinoma cell line, cervix .e 57 to 685 1 to 623       623/623
(100 %)
6 diff
(99.1 %id)
BM745939 Ascites, stomach .e 459 to 1042 1 to 584 G11W G151W     584/584
(100 %)
3 diff
(99.5 %id)
BM045373 carcinoma, cell line, Prostate .e 473 to 1101 1 to 626 K12R E13R A14P S15A E16S ...     626/626
(100 %)
4 diff
(99.4 %id)
BM008515 adenocarcinoma, Pancreas .e 474 to 1261 1 to 786 Q10X     786/786
(100 %)
11 diff
(98.7 %id)
BC004412 Pancreas, adenocarcinoma .e 475 to 1466 1 to 992 exact tiling clone, available from MGC, AAA   992/992
(100 %)
4 diff
(99.6 %id)
TI_59386212   .e 475 to 1261 99 to 883 Q10X     785/785
(100 %)
10 diff
(98.8 %id)
BE737453 adenocarcinoma, Pancreas .e 494 to 1325 75 to 899 K12R E13R A14P S15A E16S ... available from MGC,   826/1045
(79 %)
68 diff
(93.5 %id)
CN483379 eye .e 503 to 1142 641 to 2 exact tiling clone, Submitted on the opposite strand 640/641
(99 %)
1 diff
(99.9 %id)
BE386708 melanotic melanoma, skin .f 1 to 503 12 to 513 A3S L4A S5A W6A Q7E ... tiling clone,   502/514
(97 %)
9 diff
(98.3 %id)
BG480511 choriocarcinoma, placenta .g 1 to 754 1 to 756 G38A R39A P40R G41E S42A ... tiling clone,   756/758
(99 %)
12 diff
(98.5 %id)
BG773643 choriocarcinoma, placenta .g 1 to 585 1 to 589 L51K C52L G53C M55G I56M ... tiling clone,   589/589
(100 %)
9 diff
(98.5 %id)
BG774808 choriocarcinoma, placenta .g 1 to 752 1 to 757 L51K C52L G53C M55G I56M ... tiling clone,   757/769
(98 %)
16 diff
(98.0 %id)
BE903305 choriocarcinoma, placenta .g 2 to 785 23 to 811   tiling clone,   789/939
(84 %)
26 diff
(97.3 %id)
DB453822 testis .h 1 to 461 1 to 461       461/461
(100 %)
0 diff
(100 %id)
DB457503 testis .h 1 to 471 1 to 471 exact tiling clone,   471/471
(100 %)
1 diff
(99.8 %id)
BG341536 B-cells, primary B-cells from tonsils (cell line) .i 1 to 625 1 to 619 W107X P108A W128R Q142R R143G ... tiling clone,   620/620
(100 %)
15 diff
(97.6 %id)
BG756737 B-cells, primary B-cells from tonsils (cell line) .i 1 to 788 1 to 784 V47S P48Q T49R A50H P51Q ... tiling clone,   784/786
(99 %)
11 diff
(98.7 %id)
DA820081   .j -9 to 533 2 to 545   tiling clone, capped   544/544
(100 %)
2 diff
(99.7 %id)
DA942454 Spleen .j 1 to 472 2 to 475   tiling clone, capped   474/474
(100 %)
2 diff
(99.6 %id)
BI767273 pooled lung and spleen .j 61 to 933 1 to 882   tiling clone,   882/894
(98 %)
40 diff
(95.6 %id)
TI_57181685   .j 61 to 933 32 to 913       882/925
(95 %)
42 diff
(95.5 %id)
BF769685 epid_tumor .j 902 to 1292 402 to 12   tiling clone, Submitted on the opposite strand 391/402
(97 %)
0 diff
(100 %id)
DB135273 thymus .j 969 to 1517 2 to 550   tiling clone, capped   549/549
(100 %)
2 diff
(99.7 %id)
AA453138   .j 1211 to 1749 1 to 536   tiling clone, fully sequenced,   536/536
(100 %)
10 diff
(98.2 %id)
AA450000   .j 1746 to 2184 443 to 5   tiling clone, fully sequenced,   439/443
(99 %)
0 diff
(100 %id)
AK075240 thyroid gland .k 1 to 2194 1 to 2194 exact tiling clone, available from FLJ,   2194/2194
(100 %)
2 diff
(100.0 %id)
DB165855 thyroid gland .k 2 to 795 2 to 794   capped   793/793
(100 %)
4 diff
(99.5 %id)
AI479621 B-cell, chronic lymphotic leukemia .k 1607 to 2209 603 to 1       603/604
(99 %)
0 diff
(100 %id)
BQ180934 Knee, Osteoarthritic Cartilage .k 1614 to 2208 610 to 17   AAA   594/594
(100 %)
7 diff
(98.9 %id)
BX089683 eye, retina .k 1632 to 2142 525 to 15   AAA   511/511
(100 %)
0 diff
(100 %id)
BE301365 choriocarcinoma, placenta .k 1660 to 2213 555 to 2       554/555
(99 %)
0 diff
(100 %id)
DB381682 thyroid gland .k 1668 to 2194 522 to 1       522/522
(100 %)
19 diff
(96.4 %id)
AI632074 pooled germ cell tumors .k 1687 to 2212 525 to 1       525/525
(100 %)
12 diff
(97.8 %id)
AI376693   .k 1709 to 2143 438 to 4       435/438
(99 %)
0 diff
(100 %id)
BQ574571 Chondrosarcoma Grade II, Left Pelvis .k 1729 to 2208 498 to 19   AAA   480/480
(100 %)
4 diff
(99.2 %id)
BF062249 pooled germ cell tumors .k 1750 to 2191 442 to 1       442/442
(100 %)
0 diff
(100 %id)
BM712725 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .k 1758 to 2207 1 to 450       450/450
(100 %)
1 diff
(99.8 %id)
BM687729 eye, eye anterior segment .k 1786 to 2348 1 to 564       564/564
(100 %)
11 diff
(98.1 %id)
AW025918 pooled germ cell tumors .k 1790 to 2142 353 to 1       353/353
(100 %)
0 diff
(100 %id)
AA023026 heart .k 1791 to 1961 1 to 171   fully sequenced,   171/171
(100 %)
1 diff
(99.5 %id)
H88226 cochlea, ear .k 1794 to 2188 1 to 416   fully sequenced,   416/416
(100 %)
25 diff
(94.0 %id)
AI476598 pooled .k 1816 to 2143 331 to 4       328/331
(99 %)
0 diff
(100 %id)
AI828844 pooled germ cell tumors .k 1848 to 2212 364 to 1       364/364
(100 %)
4 diff
(99.0 %id)
AI190056 heart .k 1849 to 2208 360 to 1       360/360
(100 %)
8 diff
(97.8 %id)
H88227 cochlea, ear .k 1857 to 2194 343 to 1   fully sequenced,   343/343
(100 %)
9 diff
(97.4 %id)
CB054036 brain, glioblastoma (pooled) .k 1857 to 2208 21 to 372   AAA   352/372
(94 %)
6 diff
(98.4 %id)
AI144187 heart .k 1889 to 2208 320 to 1       320/320
(100 %)
0 diff
(100 %id)
AI202884 pooled germ cell tumors .k 1895 to 2208 313 to 1       313/313
(100 %)
3 diff
(99.1 %id)
BE858670 brain, glioblastoma (pooled) .k 1908 to 2206 299 to 1       299/299
(100 %)
2 diff
(99.4 %id)
AA022509 heart .k 1931 to 2209 289 to 1   fully sequenced,   289/289
(100 %)
4 diff
(98.7 %id)
Z98446 ovary, thymus .k 1941 to 2208 337 to 70   AAA   268/268
(100 %)
1 diff
(99.7 %id)
H88042 cochlea, ear .k 1949 to 2210 1 to 261   fully sequenced, AAA   261/261
(100 %)
1 diff
(99.7 %id)
H88257 cochlea, ear .k 2008 to 2167 160 to 1   fully sequenced,   160/160
(100 %)
0 diff
(100 %id)
CA338046 1st pharyngeal arch (pooled) .k 2038 to 2185 1 to 148       148/165
(89 %)
5 diff
(97.0 %id)
C02023.
matches multiple genes
  .k 2108 to 2208 1 to 101     also hits gene PDCD10 101/101
(100 %)
0 diff
(100 %id)
DB520205.
matches multiple genes
testis .k 2165 to 2595 432 to 1     also hits gene TCFL5 432/448
(96 %)
0 diff
(100 %id)
DB521566.
matches multiple genes
testis .k 2165 to 2619 455 to 1     also hits gene TCFL5 455/466
(97 %)
0 diff
(100 %id)
DB576408.
matches multiple genes
hypothalamus .k 2166 to 2632 467 to 1     also hits gene TCFL5 467/467
(100 %)
2 diff
(99.6 %id)
BU075803 insulinoma, Pancreas .k 2169 to 2752 1 to 584   tiling clone,   584/584
(100 %)
5 diff
(99.2 %id)
AW970616   .k 2190 to 2645 76 to 532       457/573
(79 %)
7 diff
(98.8 %id)
AA502547 ovary .k 2190 to 2610 8 to 428       421/428
(98 %)
6 diff
(98.6 %id)
DV462699 cochlea, ear .k 2236 to 2605 1 to 370       370/401
(92 %)
6 diff
(98.6 %id)
FN049289 breast carcinoma .k 2547 to 2627 1 to 80       80/81
(98 %)
2 diff
(97.6 %id)
DB527357.
matches multiple genes
testis .k 2599 to 3083 485 to 1   tiling clone, also hits gene TCFL5 485/486
(99 %)
5 diff
(99.0 %id)
D20154   .k 2703 to 3026 326 to 1   tiling clone,   326/331
(98 %)
2 diff
(99.4 %id)
BQ448331 Knee, Osteoarthritic Cartilage .k 2878 to 3489 628 to 17   tiling clone, AAA   612/612
(100 %)
0 diff
(100 %id)
AI073376 pooled .k 2897 to 3350 459 to 6       454/459
(98 %)
0 diff
(100 %id)
EB362291 eye, lens .k 2982 to 3489 526 to 20   AAA   507/507
(100 %)
27 diff
(94.7 %id)
TI_154048018   .l 1 to 865 941 to 88 A2V P3V C4Q L5K Q7I ... tiling clone, AAA   854/998
(85 %)
20 diff
(98.0 %id)
DB186792 liver, tumor tissue .m 1 to 547 2 to 548 exact tiling clone, capped   547/547
(100 %)
0 diff
(100 %id)
BE903706 choriocarcinoma, placenta .n 1 to 776 37 to 800 V35S R36G E37G V38A P39A ... tiling clone,   771/973
(79 %)
26 diff
(97.4 %id)
BG774248 choriocarcinoma, placenta .n 1 to 747 1 to 745 Y8T I20N P21S A22C I23H ... tiling clone,   745/745
(100 %)
12 diff
(98.4 %id)
BE733334 choriocarcinoma, placenta .n 22 to 840 1 to 799 G14A R15G L16S T17L L18* tiling clone,   799/992
(80 %)
33 diff
(96.7 %id)
BE734049 choriocarcinoma, placenta .n 23 to 741 1 to 712 V35S R36G E37R V38C P39R ... tiling clone,   712/920
(77 %)
13 diff
(98.6 %id)
DA382674 thalamus .o 1 to 495 2 to 496 exact tiling clone, capped   495/495
(100 %)
0 diff
(100 %id)
BQ575000 Chondrosarcoma Grade II, Left Pelvis Gene COL9A3, variant not shown       AAA This clone was ignored    
AL536368 brain, fetal brain Gene COL9A3, variant not shown         This clone was ignored    
AL566303 brain, fetal brain Gene COL9A3, variant not shown         This clone was ignored    
AA449350   Gene COL9A3, variant not shown       fully sequenced, This clone was ignored    
AA449609   Gene COL9A3, variant not shown       fully sequenced, This clone was ignored    
AI671561 pooled germ cell tumors Gene COL9A3, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BI754409 brain Gene COL9A3, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
BM926346 brain Gene COL9A3, variant not shown         This clone was ignored    
TI_57218532   Gene COL9A3, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI