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Gene COL8A2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
163 supporting clones for gene COL8A2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK074129 Spleen .a 1 to 4443 1 to 4443 exact tiling clone, available from FLJ,   4443/4443
(100 %)
1 diff
(100.0 %id)
NM_005202.2   .a 1 to 4447 1 to 4447 exact RefSeq,   4447/4447
(100 %)
0 diff
(100 %id)
CB269254 adipose .a 986 to 1312 1 to 329       329/329
(100 %)
6 diff
(98.2 %id)
CN482409 eye .a 1115 to 1544 1 to 431       431/431
(100 %)
2 diff
(99.6 %id)
CN482481 eye .a 1115 to 1678 1 to 564       564/564
(100 %)
0 diff
(100 %id)
CA394055 eye, RPE/choroid .a 1233 to 1312 1 to 80       80/80
(100 %)
0 diff
(100 %id)
AA639738 colon, colon tumor RER+ .a 1661 to 2209 547 to 1       547/547
(100 %)
29 diff
(94.7 %id)
CA418924 Chondrosarcoma Grade II, Left Pelvis .a 1687 to 2244 576 to 19   AAA   558/558
(100 %)
1 diff
(99.9 %id)
CN483196 eye .a 1707 to 2218 13 to 525       513/525
(97 %)
6 diff
(98.9 %id)
DA379478 thalamus .a 1786 to 2328 2 to 546   tiling clone, capped   545/545
(100 %)
3 diff
(99.5 %id)
AA853712 Bone, Hip .a 1889 to 2043 9 to 163       155/163
(95 %)
6 diff
(96.4 %id)
AL602588 human skeletal muscle .a 1923 to 2528 1 to 604       604/604
(100 %)
4 diff
(99.4 %id)
AL138070 amygdala .a 2077 to 2723 1 to 646       646/646
(100 %)
3 diff
(99.6 %id)
BX479995   .a 2082 to 2611 1 to 530       530/530
(100 %)
2 diff
(99.7 %id)
DB121723 thymus .a 2208 to 2763 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
AK090924 amygdala .a 2271 to 4263 1 to 1992   available from FLJ,   1992/1992
(100 %)
3 diff
(99.9 %id)
AX746686   .a 2271 to 4263 1 to 1992       1992/1992
(100 %)
3 diff
(99.9 %id)
DA156393 amygdala .a 2272 to 2850 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
CA389841 eye, RPE/choroid .a 2286 to 2766 1 to 481       481/481
(100 %)
1 diff
(99.8 %id)
BM545717 ovary (pool of 3) .a 2556 to 3304 122 to 887   AAA   766/1167
(65 %)
28 diff
(97.7 %id)
AA317570 retina .a 2727 to 3098 1 to 375       375/375
(100 %)
5 diff
(98.7 %id)
CD252627 White Matter .a 2761 to 3448 1 to 693       693/886
(78 %)
6 diff
(99.4 %id)
BU102190   .a 2785 to 3653 871 to 2       870/871
(99 %)
0 diff
(100 %id)
BM722449 eye, fetal eye .a 2915 to 3607 1 to 693       693/693
(100 %)
4 diff
(99.5 %id)
BM705105 eye, RPE and Choroid .a 3021 to 3453 1 to 433       433/433
(100 %)
0 diff
(100 %id)
BG251391 adenocarcinoma, cell line, Liver .a 3111 to 3906 1 to 791       791/912
(86 %)
24 diff
(97.4 %id)
W30872 senescent fibroblast .a 3259 to 3703 1 to 452       452/452
(100 %)
12 diff
(97.4 %id)
ES310383 scalp interfollicular dermis, skin .a 3289 to 3968 1 to 675       675/677
(99 %)
11 diff
(98.4 %id)
BM707146 eye, eye anterior segment .a 3335 to 3809 1 to 474   fully sequenced,   474/474
(100 %)
3 diff
(99.4 %id)
BG899319 cartilage .a 3433 to 3913 73 to 551       479/486
(98 %)
9 diff
(98.2 %id)
AL138071 amygdala .a 3450 to 4192 762 to 20   AAA   743/743
(100 %)
3 diff
(99.6 %id)
TI_154047406   .a 3454 to 4257 887 to 85   AAA   803/939
(85 %)
30 diff
(96.9 %id)
BI524827 pooled lung and spleen .a 3524 to 4400 893 to 1       893/893
(100 %)
27 diff
(97.0 %id)
TI_44159254   .a 3524 to 4400 893 to 1       893/893
(100 %)
27 diff
(97.0 %id)
BQ774255 Chondrosarcoma Grade II, Left Pelvis .a 3560 to 4213 672 to 19   AAA   654/654
(100 %)
0 diff
(100 %id)
BM697914 eye, fetal eyes .a 3579 to 4053 1 to 475   fully sequenced,   475/475
(100 %)
1 diff
(99.8 %id)
AA043621 uterus .a 3584 to 3884 1 to 303   fully sequenced,   303/303
(100 %)
1 diff
(99.7 %id)
TI_154109398   .a 3634 to 4443 889 to 91   AAA   799/948
(84 %)
11 diff
(98.9 %id)
FN106824 breast carcinoma .a 3643 to 3748 1 to 110       110/111
(99 %)
8 diff
(92.8 %id)
BM708497 eye, RPE and Choroid .a 3661 to 4072 1 to 412       412/412
(100 %)
1 diff
(99.8 %id)
TI_154052715   .a 3689 to 4443 824 to 78   AAA   747/912
(81 %)
10 diff
(99.0 %id)
AI806793 pooled .a 3706 to 4257 555 to 4       552/555
(99 %)
0 diff
(100 %id)
CR745802 Prostate .a 3718 to 4203 1 to 486       486/486
(100 %)
0 diff
(100 %id)
CA412659 Chondrosarcoma Grade II, Left Pelvis .a 3718 to 4257 558 to 19   AAA   540/540
(100 %)
0 diff
(100 %id)
TI_151741915   .a 3730 to 4447 834 to 114       721/1071
(67 %)
0 diff
(100 %id)
BQ009006 Chondrosarcoma, Left Pelvis .a 3735 to 4448 725 to 14   AAA   712/712
(100 %)
4 diff
(99.5 %id)
CA415349 Chondrosarcoma Grade II, Left Pelvis .a 3735 to 4443 724 to 19   AAA   706/706
(100 %)
3 diff
(99.6 %id)
BU628019 Bone, Enchondroma cell line .a 3736 to 4443 724 to 19   AAA   706/706
(100 %)
2 diff
(99.8 %id)
DB301933 amygdala .a 3742 to 4263 524 to 1       524/524
(100 %)
2 diff
(99.7 %id)
AA702490 liver and spleen .a 3742 to 4263 523 to 1       523/523
(100 %)
3 diff
(99.5 %id)
CA447866 Chondrosarcoma, Left Pelvis .a 3767 to 4443 693 to 17   AAA   677/677
(100 %)
0 diff
(100 %id)
BM673183 eye, eye anterior segment .a 3779 to 4257 497 to 19   fully sequenced, AAA   479/479
(100 %)
1 diff
(99.8 %id)
AA780815   .a 3786 to 4201 414 to 1       414/414
(100 %)
3 diff
(99.3 %id)
AI743547 pooled .a 3797 to 4257 464 to 4       461/464
(99 %)
0 diff
(100 %id)
AA694513   .a 3805 to 4258 452 to 1       452/452
(100 %)
4 diff
(99.2 %id)
BM708117 eye, RPE and Choroid .a 3812 to 4336 1 to 525       525/525
(100 %)
0 diff
(100 %id)
N94581 senescent fibroblast .a 3816 to 4263 459 to 12   AAA   448/448
(100 %)
4 diff
(99.2 %id)
BM663908 eye, RPE and Choroid .a 3820 to 4451 647 to 19   AAA   629/629
(100 %)
3 diff
(99.6 %id)
AW295227   .a 3822 to 4187 383 to 18   AAA   366/375
(97 %)
0 diff
(100 %id)
AW751772 colon .a 3851 to 4082 11 to 244       234/244
(95 %)
6 diff
(97.6 %id)
BU625622 cell lines, Enchondroma .a 3851 to 4443 611 to 19   AAA   593/595
(99 %)
5 diff
(99.2 %id)
AW176878 colon .a 3854 to 4082 17 to 248       232/248
(93 %)
6 diff
(97.6 %id)
AA043262 uterus .a 3854 to 4263 417 to 1   fully sequenced,   417/417
(100 %)
7 diff
(98.4 %id)
AI972561 Prostate .a 3856 to 4187 332 to 1       332/332
(100 %)
0 diff
(100 %id)
AW751757 colon .a 3860 to 4080 244 to 24       221/257
(85 %)
0 diff
(100 %id)
AW751771 colon .a 3860 to 4093 258 to 26       233/266
(87 %)
0 diff
(100 %id)
AW176888 colon .a 3861 to 4073 225 to 11       215/233
(92 %)
0 diff
(100 %id)
AI927437 normal prostate, Prostate .a 3863 to 4447 588 to 3       586/588
(99 %)
0 diff
(100 %id)
AW062754 colon .a 3865 to 4066 221 to 20       202/241
(83 %)
0 diff
(100 %id)
AW176834 colon .a 3865 to 4082 31 to 246       216/246
(87 %)
8 diff
(96.8 %id)
AW176851 colon .a 3865 to 4084 219 to 1       219/237
(92 %)
13 diff
(94.6 %id)
AW062745 colon .a 3866 to 4016 29 to 175       147/175
(84 %)
6 diff
(96.6 %id)
AW176874 colon .a 3866 to 4082 1 to 213       213/213
(100 %)
19 diff
(91.1 %id)
AW062748 colon .a 3867 to 4102 22 to 254       233/257
(90 %)
19 diff
(92.7 %id)
AW062752 colon .a 3867 to 4082 29 to 242       214/242
(88 %)
8 diff
(96.7 %id)
AW062753 colon .a 3867 to 4082 17 to 230       214/230
(93 %)
6 diff
(97.4 %id)
AW062756 colon .a 3867 to 4082 17 to 231       215/231
(93 %)
6 diff
(97.5 %id)
AW176814 colon .a 3867 to 4102 7 to 241       235/242
(97 %)
24 diff
(90.1 %id)
AW176858 colon .a 3867 to 4082 21 to 233       213/233
(91 %)
6 diff
(97.5 %id)
AW751767 colon .a 3867 to 4082 9 to 223       215/223
(96 %)
6 diff
(97.4 %id)
AW176839 colon .a 3868 to 4082 18 to 229       212/229
(92 %)
6 diff
(97.4 %id)
AW176846 colon .a 3869 to 4102 9 to 239       231/241
(95 %)
19 diff
(92.2 %id)
AW176876 colon .a 3869 to 4086 15 to 229       215/230
(93 %)
8 diff
(96.6 %id)
AW176904 colon .a 3869 to 4081 12 to 222       211/223
(94 %)
5 diff
(97.8 %id)
AW751762 colon .a 3869 to 4092 224 to 1       224/244
(91 %)
19 diff
(92.3 %id)
AW176819 colon .a 3871 to 4082 1 to 211       211/211
(100 %)
15 diff
(92.9 %id)
AW176828 colon .a 3871 to 4082 16 to 230       215/230
(93 %)
6 diff
(97.4 %id)
AW176856 colon .a 3872 to 4082 224 to 17       208/224
(92 %)
0 diff
(100 %id)
AW751753 colon .a 3873 to 4093 219 to 1       219/221
(99 %)
17 diff
(92.4 %id)
AW062746 colon .a 3874 to 4102 234 to 6       229/234
(97 %)
0 diff
(100 %id)
AW062749 colon .a 3874 to 4082 1 to 208       208/208
(100 %)
2 diff
(99.1 %id)
AW062750 colon .a 3874 to 4069 223 to 28       196/223
(87 %)
0 diff
(100 %id)
AW062751 colon .a 3874 to 4076 240 to 39       202/240
(84 %)
2 diff
(99.2 %id)
AW176818 colon .a 3874 to 4093 226 to 4       223/226
(98 %)
0 diff
(100 %id)
AW176837 colon .a 3874 to 4093 222 to 10       213/222
(95 %)
0 diff
(100 %id)
AW176840 colon .a 3874 to 4085 217 to 5       213/217
(98 %)
0 diff
(100 %id)
AW176854 colon .a 3874 to 4093 232 to 12       221/232
(95 %)
0 diff
(100 %id)
AW176857 colon .a 3874 to 4069 197 to 3       195/197
(98 %)
0 diff
(100 %id)
AW176859 colon .a 3874 to 4093 226 to 3       224/226
(99 %)
0 diff
(100 %id)
AW176873 colon .a 3874 to 4067 223 to 30       194/223
(86 %)
0 diff
(100 %id)
AW176881 colon .a 3874 to 4069 247 to 52       196/247
(79 %)
0 diff
(100 %id)
AW176882 colon .a 3874 to 4093 242 to 25       218/242
(90 %)
0 diff
(100 %id)
AW176886 colon .a 3874 to 4071 201 to 4       198/201
(98 %)
0 diff
(100 %id)
AW176887 colon .a 3874 to 4068 198 to 3       196/198
(98 %)
0 diff
(100 %id)
AW751741 colon .a 3874 to 4066 203 to 6       198/203
(97 %)
0 diff
(100 %id)
AW751765 colon .a 3874 to 4093 224 to 8       217/224
(96 %)
0 diff
(100 %id)
AW751773 colon .a 3874 to 4082 207 to 1       207/207
(100 %)
11 diff
(94.7 %id)
AW176880 colon .a 3875 to 4080 207 to 4       204/208
(98 %)
0 diff
(100 %id)
AW751745 colon .a 3875 to 4069 196 to 2       195/197
(98 %)
0 diff
(100 %id)
AW062755 colon .a 3876 to 4083 19 to 222       204/223
(91 %)
5 diff
(97.8 %id)
AW176813 colon .a 3878 to 4082 12 to 216       205/216
(94 %)
6 diff
(97.3 %id)
AW176815 colon .a 3878 to 4082 15 to 218       204/218
(93 %)
6 diff
(97.3 %id)
AW176883 colon .a 3878 to 4082 29 to 232       204/232
(87 %)
8 diff
(96.6 %id)
AW751751 colon .a 3885 to 4082 19 to 213       195/213
(91 %)
6 diff
(97.2 %id)
AW139967   .a 3886 to 4257 389 to 18   AAA   372/372
(100 %)
0 diff
(100 %id)
AW176871 colon .a 3887 to 4082 1 to 195       195/195
(100 %)
10 diff
(94.9 %id)
AW176852 colon .a 3889 to 4082 20 to 213       194/213
(91 %)
6 diff
(97.2 %id)
AW176861 colon .a 3889 to 4082 28 to 220       193/220
(87 %)
6 diff
(97.3 %id)
AW176862 colon .a 3889 to 4102 37 to 248       212/251
(84 %)
11 diff
(95.7 %id)
AW176872 colon .a 3889 to 4082 16 to 210       195/210
(92 %)
6 diff
(97.2 %id)
AW176831 colon .a 3892 to 4102 31 to 243       213/246
(86 %)
6 diff
(97.6 %id)
AW176879 colon .a 3895 to 4082 36 to 220       185/220
(84 %)
6 diff
(97.3 %id)
TI_151742338   .a 3895 to 4449 662 to 107       556/662
(83 %)
0 diff
(100 %id)
AW176841 colon .a 3897 to 4082 45 to 231       187/231
(80 %)
9 diff
(96.2 %id)
AW176842 colon .a 3901 to 4082 31 to 214       184/214
(85 %)
6 diff
(97.2 %id)
AW176830 colon .a 3912 to 4082 12 to 180       169/180
(93 %)
6 diff
(96.7 %id)
BM672868 eye, optic nerve .a 3919 to 4263 363 to 19   AAA   345/345
(100 %)
3 diff
(99.2 %id)
AI084616 senescent fibroblast .a 3923 to 4452 538 to 9   tiling clone,   530/538
(98 %)
0 diff
(100 %id)
AI453544 pooled .a 3924 to 4448 541 to 17   AAA   525/525
(100 %)
2 diff
(99.7 %id)
BF062435 colon, colon tumor, RER+ .a 3925 to 4446 522 to 1       522/522
(100 %)
0 diff
(100 %id)
BE672932 Prostate .a 3933 to 4448 516 to 1       516/516
(100 %)
1 diff
(99.9 %id)
AI828296 adenocarcinoma, Pancreas .a 3937 to 4447 512 to 2       511/512
(99 %)
0 diff
(100 %id)
AI863570 2 pooled tumors (clear cell type), Kidney .a 3942 to 4264 327 to 5       323/327
(98 %)
0 diff
(100 %id)
EL946592 eyeball .a 3953 to 4449 1 to 496       496/503
(98 %)
10 diff
(98.1 %id)
TI_227713950   .a 3953 to 4448 590 to 90   AAA   501/988
(50 %)
21 diff
(97.9 %id)
BF062464 colon, colon tumor, RER+ .a 3966 to 4446 481 to 1       481/481
(100 %)
0 diff
(100 %id)
BM678969 eye, fetal eye .a 3966 to 4451 504 to 19   AAA   486/486
(100 %)
1 diff
(99.8 %id)
AI264326 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3967 to 4441 475 to 1       475/475
(100 %)
0 diff
(100 %id)
AI280956 adenocarcinoma, colon .a 3973 to 4443 471 to 1       471/471
(100 %)
0 diff
(100 %id)
AI803443   .a 3974 to 4447 475 to 2       474/475
(99 %)
0 diff
(100 %id)
AA776976 heart .a 3996 to 4445 450 to 1       450/450
(100 %)
1 diff
(99.8 %id)
AI084614 senescent fibroblast .a 4005 to 4452 456 to 9       448/456
(98 %)
0 diff
(100 %id)
AI751695 Bone, Hip .a 4006 to 4440 436 to 2       435/436
(99 %)
0 diff
(100 %id)
AI377572   .a 4009 to 4446 438 to 1       438/438
(100 %)
0 diff
(100 %id)
AI016576   .a 4017 to 4447 432 to 2       431/432
(99 %)
0 diff
(100 %id)
AW439994 2 pooled tumors (clear cell type), Kidney .a 4020 to 4446 426 to 1       426/426
(100 %)
1 diff
(99.8 %id)
BM667087 eye, fetal eyes .a 4023 to 4448 439 to 14   fully sequenced, AAA   426/426
(100 %)
0 diff
(100 %id)
CD364690 Alveolar Macrophage, lung .a 4025 to 4448 436 to 14   AAA   423/423
(100 %)
1 diff
(99.8 %id)
AW194255 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 4029 to 4448 420 to 1       420/420
(100 %)
6 diff
(98.6 %id)
AW627763 2 pooled high-grade transitional celltumors, genitourinary tract .a 4034 to 4448 415 to 1       415/415
(100 %)
0 diff
(100 %id)
AA668249   .a 4043 to 4418 376 to 1       376/376
(100 %)
0 diff
(100 %id)
AW191962 adenocarcinoma, Pancreas .a 4051 to 4448 421 to 23   AAA   399/399
(100 %)
2 diff
(99.5 %id)
AA631511 thyroid .a 4084 to 4443 1 to 362   AAA   362/362
(100 %)
8 diff
(97.8 %id)
AI079870 senescent fibroblast .a 4093 to 4447 360 to 6       355/360
(98 %)
0 diff
(100 %id)
BP392922 pancreatic islet .a 4109 to 4443 1 to 335     Submitted on the opposite strand 335/335
(100 %)
0 diff
(100 %id)
AW022524 cochlea, ear .a 4109 to 4442 1 to 334   AAA   334/334
(100 %)
5 diff
(98.6 %id)
AI968540 adenocarcinoma, Pancreas .a 4112 to 4449 338 to 1       338/338
(100 %)
1 diff
(99.8 %id)
CD677468 eye, Trabecular meshwork .a 4115 to 4443 1 to 329   AAA   329/329
(100 %)
0 diff
(100 %id)
AA382616 testis .a 4132 to 4270 129 to 267       139/267
(52 %)
10 diff
(96.3 %id)
AW291569   .a 4141 to 4449 328 to 18   AAA   311/314
(99 %)
26 diff
(91.8 %id)
R36548 placenta .a 4225 to 4432 220 to 12       209/220
(95 %)
0 diff
(100 %id)
AA853713 Bone, Hip .a 4250 to 4449 212 to 13       200/212
(94 %)
0 diff
(100 %id)
AW196059 adenocarcinoma, Pancreas .a 4289 to 4449 165 to 5       161/165
(97 %)
0 diff
(100 %id)
AA618567 normal prostate, Prostate .a 4293 to 4443 151 to 1       151/151
(100 %)
0 diff
(100 %id)
BC099645 PCR rescued clones .b 1 to 2036 1 to 2036 exact tiling clone,   2036/2036
(100 %)
1 diff
(100.0 %id)
BC096297 PCR rescued clones .b 1 to 2036 1 to 2036 exact tiling clone,   2036/2036
(100 %)
1 diff
(100.0 %id)
BC096296 PCR rescued clones Gene COL8A2, variant not shown         Suspected internal deletion, this clone was ignored    
AI248360 liver and spleen Gene COL8A2, variant not shown         Suspected internal deletion, this clone was ignored    
BC096295 PCR rescued clones Gene COL8A2, variant not shown         Suspected internal deletion, this clone was ignored    
AI751694 Bone, Hip Gene COL8A2, variant not shown         This clone was ignored    
BM707468 eye, eye anterior segment Gene COL8A2, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI