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Gene COL4A3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
74 supporting clones for gene COL4A3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_000091.4   .a 1 to 8096 1 to 8096 exact RefSeq, AAA   8096/8096
(100 %)
0 diff
(100 %id)
X80031 Kidney .a 1 to 5175 1 to 5174 L141P E162G P574L tiling clone,   5174/5174
(100 %)
13 diff
(99.8 %id)
AU099354   .a 58 to 356 1 to 300   tiling clone,   300/300
(100 %)
3 diff
(99.0 %id)
BQ636239 eye, retina .a 1726 to 2283 1 to 558       558/558
(100 %)
2 diff
(99.7 %id)
CD675393 eye, lens .a 1816 to 2514 1 to 699   tiling clone,   699/699
(100 %)
0 diff
(100 %id)
BM712932 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2974 to 3472 1 to 499   tiling clone,   499/499
(100 %)
0 diff
(100 %id)
CV573775 cornea, eye .a 3295 to 3902 1 to 608       608/608
(100 %)
0 diff
(100 %id)
BQ882703 dorsal root ganglia .a 3425 to 4322 1 to 909       910/912
(99 %)
40 diff
(95.7 %id)
M81379 Kidney .a 4153 to 5852 1 to 1691       1691/1691
(100 %)
38 diff
(97.8 %id)
M92993   .a 4316 to 5298 1 to 983       983/983
(100 %)
0 diff
(100 %id)
AF258351   .a 4438 to 5175 1 to 738       738/738
(100 %)
0 diff
(100 %id)
EU268882   .a 4456 to 5172 1 to 717       717/717
(100 %)
0 diff
(100 %id)
S55790   .a 4519 to 5175 1 to 657       657/657
(100 %)
2 diff
(99.7 %id)
AL713290 human skeletal muscle .a 4592 to 5123 1 to 532       532/532
(100 %)
0 diff
(100 %id)
AL042577 testis .a 4593 to 4777 1 to 191       191/203
(94 %)
8 diff
(96.1 %id)
DA125355 cerebellum .a 4808 to 5400 2 to 594   tiling clone, capped   593/593
(100 %)
0 diff
(100 %id)
AV724892 hypothalamus .a 4815 to 5232 1 to 411       411/420
(97 %)
9 diff
(97.9 %id)
CD102220 Pooled-Skin .a 5197 to 5863 1 to 671       671/762
(88 %)
21 diff
(97.3 %id)
BM930294 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 5334 to 5793 1 to 459   tiling clone, fully sequenced,   459/459
(100 %)
5 diff
(99.0 %id)
CB047362 Kidney .a 5364 to 5630 10 to 276       267/279
(95 %)
7 diff
(97.5 %id)
BX115261 carcinoid, lung .a 5432 to 5811 1 to 380       380/380
(100 %)
3 diff
(99.3 %id)
TI_154038296   .a 5460 to 6032 663 to 82   AAA   582/859
(67 %)
48 diff
(94.5 %id)
CB985668 Pooled-Glandular .a 5611 to 6231 1 to 621   tiling clone,   621/623
(99 %)
4 diff
(99.4 %id)
CA444658 lung, Metastatic Chondrosarcoma .a 5613 to 6032 437 to 19   AAA   419/419
(100 %)
10 diff
(97.7 %id)
AI694562 carcinoid, lung .a 5663 to 6230 569 to 1       569/569
(100 %)
6 diff
(99.0 %id)
AV748440 Pituitary .a 5670 to 6204 527 to 1     Submitted on the opposite strand 527/547
(96 %)
11 diff
(98.0 %id)
AW058588 Kidney .a 5676 to 6231 556 to 1       556/556
(100 %)
4 diff
(99.3 %id)
BE669669 carcinoid, lung .a 5703 to 6234 532 to 1       532/532
(100 %)
2 diff
(99.7 %id)
BM683763 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 5763 to 6245 487 to 1   fully sequenced,   487/487
(100 %)
4 diff
(99.2 %id)
AA622559 germ cell tumor .a 5805 to 6232 428 to 1       428/428
(100 %)
2 diff
(99.6 %id)
BE468113 carcinoid, lung .a 5805 to 6230 426 to 1       426/426
(100 %)
1 diff
(99.8 %id)
AI473718 Kidney .a 5806 to 6231 426 to 1       426/426
(100 %)
3 diff
(99.3 %id)
AW615114 Kidney .a 5863 to 6231 369 to 1       369/369
(100 %)
4 diff
(99.0 %id)
BF448104 Kidney .a 5970 to 6231 262 to 1       262/262
(100 %)
1 diff
(99.7 %id)
AA973420 carcinoid, lung .a 6008 to 6226 1 to 219     Submitted on the opposite strand 219/219
(100 %)
1 diff
(99.6 %id)
AI703021 carcinoid, lung .a 6012 to 6230 219 to 1       219/219
(100 %)
7 diff
(96.9 %id)
BE710229 head_neck .a 6101 to 6341 1 to 242       242/249
(97 %)
3 diff
(98.8 %id)
BE710251 head_neck .a 6101 to 6341 1 to 242       242/249
(97 %)
3 diff
(98.8 %id)
CD107984 brain, Pituitary .a 6139 to 6486 1 to 351   tiling clone,   351/728
(48 %)
10 diff
(98.7 %id)
AL035959 brain .a 6199 to 6521 1 to 323   tiling clone,   323/323
(100 %)
4 diff
(98.8 %id)
BM700456 eye, lens .a 6431 to 7025 1 to 595   tiling clone,   595/595
(100 %)
1 diff
(99.9 %id)
BM670570 eye, lens .a 7612 to 8096 503 to 19   tiling clone, AAA   485/485
(100 %)
2 diff
(99.6 %id)
BM728016 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1 to 640 1 to 640   tiling clone, fully sequenced,   640/640
(100 %)
2 diff
(99.7 %id)
BM680591 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 579 to 968 408 to 19   tiling clone, fully sequenced, AAA   390/390
(100 %)
1 diff
(99.8 %id)
BQ328815 lung_normal .c 1 to 638 18 to 649   tiling clone,   632/692
(91 %)
22 diff
(96.9 %id)
CA777036.
matches multiple genes
Pancreas, Purified pancreatic islet .c 222 to 745 1 to 524   tiling clone, also hits gene lostaby 524/532
(98 %)
2 diff
(99.7 %id)
AL036294 brain .d 1 to 662 1 to 664   tiling clone,   664/664
(100 %)
7 diff
(99.0 %id)
AI952285 lung, two pooled squamous cell carcinomas .d 260 to 1002 741 to 1 G2R D3C A4* tiling clone,   741/753
(98 %)
26 diff
(96.6 %id)
U02519   .e 1 to 600 1 to 600 R101I L184V tiling clone,   600/600
(100 %)
3 diff
(99.5 %id)
BM717659 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .f 1 to 479 1 to 479 exact tiling clone, fully sequenced,   479/479
(100 %)
0 diff
(100 %id)
TI_151751107   .f 309 to 941 747 to 116   tiling clone, AAA   632/632
(100 %)
26 diff
(95.9 %id)
BU739220 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .f 418 to 905 504 to 17   tiling clone, fully sequenced, AAA   488/488
(100 %)
1 diff
(99.8 %id)
U02520   .g 1 to 521 1 to 521 exact tiling clone,   521/521
(100 %)
0 diff
(100 %id)
AV746745 Pituitary .h 1 to 478 11 to 484   tiling clone,   474/474
(100 %)
18 diff
(96.3 %id)
AV747911 Pituitary .h 57 to 529 1 to 465       465/487
(95 %)
23 diff
(95.3 %id)
AV746776 Pituitary .h 57 to 544 1 to 483   tiling clone,   483/489
(98 %)
7 diff
(98.6 %id)
AV750271 Pituitary .h 58 to 538 1 to 477       477/488
(97 %)
5 diff
(99.0 %id)
CB957049 Pooled-Glandular .h 495 to 1221 1 to 734 exact tiling clone,   734/738
(99 %)
15 diff
(98.0 %id)
BG535003 lung .h 650 to 1413 1 to 755   tiling clone,   755/840
(89 %)
21 diff
(97.5 %id)
BX118233 pooled .h 787 to 1407 1 to 622       622/622
(100 %)
3 diff
(99.6 %id)
CD677751 eye, Trabecular meshwork .h 872 to 1467 1 to 596   tiling clone,   596/596
(100 %)
2 diff
(99.7 %id)
CD677290 eye, Trabecular meshwork .h 877 to 1508 1 to 632       632/632
(100 %)
2 diff
(99.7 %id)
CV570149 cornea, eye .h 980 to 1366 1 to 387       387/387
(100 %)
2 diff
(99.5 %id)
CD104075 Pooled-Skin .h 1109 to 1610 1 to 498       498/541
(92 %)
36 diff
(93.4 %id)
AI243241 pooled .h 1358 to 1737 390 to 11   tiling clone, AAA   380/380
(100 %)
3 diff
(99.3 %id)
D58324   .h 1401 to 1608 1 to 210       210/218
(96 %)
5 diff
(97.8 %id)
AA983764 pooled .h 1449 to 1786 340 to 3   tiling clone,   338/342
(98 %)
0 diff
(100 %id)
CA389230 eye, RPE/choroid .i-u 1 to 465 1 to 465   tiling clone,   465/465
(100 %)
2 diff
(99.6 %id)
AA723950 parathyroid gland, parathyroid tumor .i-u 56 to 392 343 to 7       337/343
(98 %)
0 diff
(100 %id)
AA702455 liver and spleen .i-u 386 to 718 340 to 8   tiling clone,   333/340
(97 %)
0 diff
(100 %id)
AA287797 germinal center B cell .i-u 648 to 1166 1 to 518 exact tiling clone,   518/518
(100 %)
4 diff
(99.3 %id)
BX646031   .j-u 1 to 736 1 to 733 exact tiling clone,   733/733
(100 %)
5 diff
(99.4 %id)
AW607723 head_neck .k-u 1 to 442 1 to 443 exact tiling clone,   443/443
(100 %)
13 diff
(97.1 %id)
BI036607 nervous_tumor .l-u 1 to 379 1 to 379 G65V tiling clone,   379/379
(100 %)
6 diff
(98.5 %id)
CD709780 normal nasopharynx .l-u 77 to 286 21 to 228       208/228
(91 %)
6 diff
(97.4 %id)
BM671116 eye, optic nerve Gene COL4A3, variant not shown       AAA This clone was ignored    
BM709969 eye, optic nerve Gene COL4A3, variant not shown         This clone was ignored    
DW420356 Liver Gene COL4A3, variant not shown         This clone was ignored    
BG540956 lung Gene COL4A3, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j-u, .k-u, .l-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI