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Gene COL11A2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
112 supporting clones for gene COL11A2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_080680.2   .a 1 to 6425 1 to 6425 exact RefSeq,   6425/6425
(100 %)
0 diff
(100 %id)
NM_080681.2   .b 1 to 6167 1 to 6167 exact RefSeq,   6167/6167
(100 %)
0 diff
(100 %id)
BU164080 melanotic melanoma, skin .b 16 to 757 1 to 749   tiling clone, available from MGC,   749/876
(85 %)
11 diff
(98.8 %id)
CN285415 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 34 to 570 1 to 537       537/537
(100 %)
0 diff
(100 %id)
BF943268 nervous_normal .b 387 to 928 567 to 27     Submitted on the opposite strand 541/567
(95 %)
2 diff
(99.7 %id)
L18987 cartilage .b 391 to 2391 10 to 2010   tiling clone,   2001/2010
(99 %)
27 diff
(98.7 %id)
J04974   .b 2158 to 5040 1 to 2883   tiling clone,   2883/2883
(100 %)
30 diff
(99.0 %id)
CN285416 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 3058 to 3674 1 to 617   tiling clone,   617/617
(100 %)
0 diff
(100 %id)
EG327451 pooled .b 3440 to 3666 227 to 1     Submitted on the opposite strand 227/227
(100 %)
1 diff
(99.6 %id)
AL046059 testis .b 3479 to 4127 1 to 649   tiling clone,   649/649
(100 %)
0 diff
(100 %id)
AU118605 whole embryo, mainly head .b 3900 to 4725 2 to 818   capped   817/847
(96 %)
27 diff
(96.9 %id)
CB044234 colon, juvenile granulosa tumor .b 4166 to 4776 7 to 617       611/617
(99 %)
6 diff
(99.1 %id)
AW950914   .b 4219 to 4831 11 to 623       613/648
(94 %)
10 diff
(98.5 %id)
AA350491 brain .b 4220 to 4545 1 to 326       326/326
(100 %)
0 diff
(100 %id)
BG926755 cartilage .b 4254 to 4833 86 to 666       581/612
(94 %)
9 diff
(98.6 %id)
BI043242 ovary .b 4497 to 4718 19 to 241       223/252
(88 %)
10 diff
(96.1 %id)
AU118676 whole embryo, mainly head .b 4537 to 5269 2 to 725   tiling clone, capped   724/753
(96 %)
13 diff
(98.3 %id)
BG900395 cartilage .b 4666 to 5061 1 to 396       396/396
(100 %)
4 diff
(99.0 %id)
BX282345 whole brain .b 4801 to 5314 1 to 514       514/514
(100 %)
1 diff
(99.9 %id)
H13347 whole brain .b 4802 to 5271 1 to 480       480/504
(95 %)
19 diff
(96.3 %id)
AU145122 whole embryo, mainly head .b 4910 to 5501 590 to 1       590/592
(99 %)
10 diff
(98.4 %id)
AA614321 adrenal adenoma, adrenal gland .b 4995 to 5549 555 to 1       555/566
(98 %)
5 diff
(99.2 %id)
BG896581 cartilage .b 5033 to 5354 83 to 404       322/336
(95 %)
6 diff
(98.3 %id)
AI689068 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 5133 to 5551 419 to 1   tiling clone,   419/419
(100 %)
0 diff
(100 %id)
TI_154122807   .b 5151 to 5980 916 to 104   tiling clone, AAA   813/952
(85 %)
26 diff
(97.3 %id)
TI_154050264   .b 5185 to 5980 903 to 122   AAA   782/957
(81 %)
33 diff
(96.6 %id)
BQ026846 Chondrosarcoma, Left Pelvis .b 5204 to 5566 382 to 19   AAA   364/364
(100 %)
9 diff
(97.6 %id)
BQ185768 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 5205 to 5671 1 to 468       468/468
(100 %)
1 diff
(99.8 %id)
CN285414 embryonic stem cells, cell lines H1, H7, andH9 .b 5348 to 6123 1 to 776       776/776
(100 %)
3 diff
(99.7 %id)
CA411706 Chondrosarcoma Grade II, Left Pelvis .b 5407 to 5980 592 to 19   AAA   574/574
(100 %)
4 diff
(99.4 %id)
BQ182028 Knee, Osteoarthritic Cartilage .b 5442 to 5980 557 to 19   AAA   539/539
(100 %)
4 diff
(99.3 %id)
CA414682 Chondrosarcoma Grade II, Left Pelvis .b 5492 to 6164 690 to 19   AAA   672/672
(100 %)
1 diff
(99.9 %id)
CD516406 White Matter .b 5513 to 5980 34 to 501   AAA   468/501
(93 %)
6 diff
(98.9 %id)
CD512790 brain, Pituitary .b 5516 to 5980 1 to 465   AAA   465/465
(100 %)
0 diff
(100 %id)
AA328326   .b 5536 to 5993 1 to 459       459/459
(100 %)
3 diff
(99.4 %id)
CA414689 Chondrosarcoma Grade II, Left Pelvis .b 5537 to 6162 643 to 18   AAA   626/626
(100 %)
2 diff
(99.7 %id)
BQ573803 Chondrosarcoma Grade II, Left Pelvis .b 5574 to 6164 608 to 19   AAA   590/590
(100 %)
8 diff
(98.7 %id)
AA350490 brain .b 5605 to 5980 376 to 1       376/376
(100 %)
4 diff
(99.0 %id)
AA350489 brain .b 5665 to 5980 316 to 1       316/316
(100 %)
1 diff
(99.7 %id)
TI_154112294   .b 5672 to 6163 575 to 83   AAA   493/990
(49 %)
14 diff
(98.6 %id)
AA758901   .b 5677 to 6162 488 to 5       484/488
(99 %)
0 diff
(100 %id)
AU145180 whole embryo, mainly head .b 5679 to 6164 488 to 1       488/494
(98 %)
10 diff
(98.0 %id)
BQ004689 Chondrosarcoma, Left Pelvis .b 5680 to 6164 501 to 19   AAA   483/485
(99 %)
2 diff
(99.6 %id)
BQ007758 Chondrosarcoma, Left Pelvis .b 5682 to 6167 504 to 19   AAA   486/486
(100 %)
5 diff
(99.0 %id)
AI056670   .b 5683 to 5980 316 to 19   AAA   298/298
(100 %)
0 diff
(100 %id)
AI954682 pooled germ cell tumors .b 5683 to 5980 298 to 1       298/298
(100 %)
0 diff
(100 %id)
BE672406 pooled germ cell tumors .b 5684 to 5980 297 to 1       297/297
(100 %)
0 diff
(100 %id)
BF593546 pooled germ cell tumors .b 5687 to 5980 295 to 1       295/295
(100 %)
5 diff
(98.4 %id)
TI_154109487   .b 5687 to 6164 582 to 107   AAA   476/481
(98 %)
3 diff
(99.4 %id)
CA412828 Chondrosarcoma Grade II, Left Pelvis .b 5689 to 6164 494 to 19   AAA   476/477
(99 %)
1 diff
(99.8 %id)
TI_151745640   .b 5689 to 6164 570 to 97   AAA   474/478
(99 %)
6 diff
(98.8 %id)
BQ006897 Chondrosarcoma, Left Pelvis .b 5690 to 5980 311 to 19   AAA   293/293
(100 %)
2 diff
(99.4 %id)
BQ181816 Knee, Osteoarthritic Cartilage .b 5690 to 6162 491 to 19   AAA   473/473
(100 %)
0 diff
(100 %id)
CA413886 Chondrosarcoma Grade II, Left Pelvis .b 5690 to 5980 309 to 19   AAA   291/291
(100 %)
5 diff
(98.3 %id)
AI802388   .b 5691 to 5977 290 to 4       287/290
(98 %)
0 diff
(100 %id)
CB044233 colon, juvenile granulosa tumor .b 5691 to 6167 493 to 17   AAA   477/477
(100 %)
0 diff
(100 %id)
BQ181070 Knee, Osteoarthritic Cartilage .b 5691 to 6162 490 to 19   AAA   472/472
(100 %)
0 diff
(100 %id)
TI_151763907   .b 5692 to 6161 567 to 98   AAA   470/474
(99 %)
4 diff
(99.2 %id)
BQ181700 Knee, Osteoarthritic Cartilage .b 5693 to 6164 490 to 19   AAA   472/472
(100 %)
0 diff
(100 %id)
BQ181743 Knee, Osteoarthritic Cartilage .b 5693 to 6177 504 to 19   tiling clone, AAA   486/486
(100 %)
1 diff
(99.8 %id)
BQ044924 Knee, Osteoarthritic Cartilage .b 5695 to 6162 486 to 19   AAA   468/468
(100 %)
0 diff
(100 %id)
AI741176 pooled .b 5696 to 6164 483 to 15   AAA   469/469
(100 %)
0 diff
(100 %id)
CA415316 Chondrosarcoma Grade II, Left Pelvis .b 5697 to 6162 484 to 19   AAA   466/466
(100 %)
0 diff
(100 %id)
CA448594 Chondrosarcoma, Left Pelvis .b 5699 to 6163 483 to 19   AAA   465/465
(100 %)
6 diff
(98.8 %id)
CN478529 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 5701 to 6161 478 to 19   AAA   460/460
(100 %)
1 diff
(99.8 %id)
CA447939 Chondrosarcoma, Left Pelvis .b 5701 to 6164 481 to 19   AAA   463/463
(100 %)
1 diff
(99.8 %id)
AA579850 adrenal adenoma, adrenal gland .b 5707 to 6167 465 to 3       463/465
(99 %)
0 diff
(100 %id)
CA414513 Chondrosarcoma Grade II, Left Pelvis .b 5709 to 6162 470 to 19   AAA   452/452
(100 %)
2 diff
(99.6 %id)
BQ448223 Knee, Osteoarthritic Cartilage .b 5712 to 6164 471 to 19   AAA   453/453
(100 %)
0 diff
(100 %id)
AW273324 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 5718 to 6162 456 to 12   AAA   445/445
(100 %)
0 diff
(100 %id)
AI377015   .b 5720 to 6167 452 to 5       448/452
(99 %)
0 diff
(100 %id)
AI167147 pooled .b 5729 to 6165 440 to 4       437/440
(99 %)
0 diff
(100 %id)
CN480171 Knee, Osteoarthritic Cartilage .b 5729 to 6168 454 to 15   tiling clone, AAA   440/440
(100 %)
4 diff
(99.1 %id)
AI915638 pooled .b 5732 to 6162 435 to 5       431/435
(99 %)
0 diff
(100 %id)
AI123641 pooled .b 5737 to 6161 430 to 6       425/430
(98 %)
0 diff
(100 %id)
N22033 nose, olfactory epithelium .b 5738 to 6164 459 to 25   AAA   435/440
(98 %)
12 diff
(97.3 %id)
AI808678 pooled .b 5760 to 6165 408 to 4       405/408
(99 %)
0 diff
(100 %id)
BF432143 pooled .b 5761 to 6166 409 to 4       406/409
(99 %)
0 diff
(100 %id)
BF432179 pooled .b 5761 to 6157 397 to 1       397/397
(100 %)
8 diff
(98.0 %id)
R41059   .b 5763 to 6118 357 to 1       357/364
(98 %)
7 diff
(98.1 %id)
AA613967 adrenal adenoma, adrenal gland .b 5764 to 6164 400 to 1       400/400
(100 %)
3 diff
(99.3 %id)
BF439124 pooled .b 5775 to 6165 393 to 3       391/393
(99 %)
0 diff
(100 %id)
AW470021 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 5793 to 6165 374 to 2       373/374
(99 %)
0 diff
(100 %id)
AW243806 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 5802 to 6164 380 to 18   AAA   363/363
(100 %)
0 diff
(100 %id)
AI038760   .b 5816 to 6165 352 to 4       349/352
(99 %)
0 diff
(100 %id)
AI123016 pooled .b 5827 to 6162 338 to 4       335/338
(99 %)
0 diff
(100 %id)
BF438973 pooled .b 5835 to 6161 332 to 6       327/332
(98 %)
0 diff
(100 %id)
DV462451 cochlea, ear .b 5925 to 6162 278 to 42   AAA Submitted on the opposite strand 237/237
(100 %)
1 diff
(99.6 %id)
AI381193   .b 5944 to 6167 224 to 1       224/224
(100 %)
1 diff
(99.6 %id)
DV462729 cochlea, ear .b 5947 to 6162 1 to 216   AAA   216/216
(100 %)
2 diff
(99.1 %id)
DV461934 cochlea, ear .b 5958 to 6167 1 to 210   AAA   210/210
(100 %)
2 diff
(99.1 %id)
AI915174 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 5970 to 6162 209 to 17   AAA   193/193
(100 %)
0 diff
(100 %id)
DV461774 cochlea, ear .b 5984 to 6161 15 to 192       178/207
(85 %)
6 diff
(97.2 %id)
DV460983 cochlea, ear .b 6067 to 6162 122 to 27   AAA Submitted on the opposite strand 96/96
(100 %)
0 diff
(100 %id)
DV460112 cochlea, ear .b 6069 to 6162 1 to 94   AAA   94/94
(100 %)
2 diff
(97.9 %id)
NM_080679.2   .c 1 to 6104 1 to 6104 exact RefSeq,   6104/6104
(100 %)
0 diff
(100 %id)
AK130938 uterus .d 1 to 1985 1 to 1985 L91P tiling clone, available from FLJ,   1985/1985
(100 %)
2 diff
(99.9 %id)
NM_001163771.1   .e 1 to 1206 1 to 1206 exact RefSeq, AAA   1206/1206
(100 %)
0 diff
(100 %id)
BC053886 Skin, melanotic melanoma. .e 15 to 1206 1 to 1192 exact tiling clone, available from MGC, AAA   1192/1192
(100 %)
0 diff
(100 %id)
TI_154050060   .e 329 to 1206 967 to 93   AAA   875/1038
(84 %)
14 diff
(98.7 %id)
AI539276 pooled .e 454 to 1204 752 to 2       751/908
(82 %)
29 diff
(96.9 %id)
TI_154049785   .e 495 to 1206 807 to 87   AAA   721/918
(78 %)
28 diff
(97.0 %id)
CA413739 Chondrosarcoma Grade II, Left Pelvis .e 548 to 1206 677 to 19   AAA   659/659
(100 %)
1 diff
(99.9 %id)
CA412008 Chondrosarcoma Grade II, Left Pelvis .e 554 to 1203 670 to 19   AAA   652/652
(100 %)
2 diff
(99.7 %id)
BQ575919 Chondrosarcoma Grade II, Left Pelvis .e 585 to 1206 638 to 16   AAA   623/623
(100 %)
1 diff
(99.9 %id)
CA411731 Chondrosarcoma Grade II, Left Pelvis .e 650 to 1206 573 to 16   AAA   558/558
(100 %)
1 diff
(99.9 %id)
AA604213 adrenal adenoma, adrenal gland .e 694 to 1207 514 to 1       514/514
(100 %)
1 diff
(99.9 %id)
AA631538 adrenal adenoma, adrenal gland .e 806 to 1203 409 to 12   AAA   398/398
(100 %)
2 diff
(99.5 %id)
BG900735 cartilage .e 835 to 1142 85 to 392       308/329
(93 %)
1 diff
(99.7 %id)
G36903   .e 867 to 1206 353 to 13   AAA Submitted on the opposite strand 341/341
(100 %)
1 diff
(99.8 %id)
N66396 cochlea, ear .e 867 to 1206 353 to 13   AAA   341/341
(100 %)
1 diff
(99.8 %id)
AW275108 pooled .e 1147 to 1452 1 to 306   tiling clone, Submitted on the opposite strand 306/306
(100 %)
2 diff
(99.4 %id)
BG926058 cartilage Gene COL11A2, variant not shown         Suspected internal deletion, this clone was ignored    
BE466529 pooled germ cell tumors Gene COL11A2, variant not shown         Suspected internal deletion, this clone was ignored    
BE505005 pooled germ cell tumors Gene COL11A2, variant not shown         Suspected internal deletion, this clone was ignored    
BQ682326 melanotic melanoma, cell line, skin Gene COL11A2, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI