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Gene COCHTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
341 supporting clones for gene COCH back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BG703800 brain, hippocampus .a 1 to 623 1 to 623   tiling clone,   623/624
(99 %)
8 diff
(98.8 %id)
DN991830 brain, whole brain .a 618 to 1262 1 to 645   tiling clone,   645/646
(99 %)
8 diff
(98.8 %id)
BX325593 Neuroblastoma Cot 25-normalized .a 876 to 1459 986 to 411     Submitted on the opposite strand 576/994
(57 %)
22 diff
(97.8 %id)
BX325807 Neuroblastoma Cot 25-normalized .a 910 to 1787 872 to 1   tiling clone, Submitted on the opposite strand 872/883
(98 %)
13 diff
(98.6 %id)
BX327008 Neuroblastoma Cot 25-normalized .a 1105 to 1797 698 to 1   tiling clone, Submitted on the opposite strand 698/897
(77 %)
15 diff
(98.4 %id)
AW615548 lung, small cell carcinoma .a 1802 to 2257 453 to 2   tiling clone,   452/483
(93 %)
0 diff
(100 %id)
AA017678 eye, retina .b 1 to 332 7 to 330   tiling clone,   330/330
(100 %)
12 diff
(96.4 %id)
BI464635 testis .b 110 to 701 6 to 601   tiling clone,   595/631
(94 %)
31 diff
(95.1 %id)
BI560671 testis .b 110 to 890 6 to 781   tiling clone,   776/923
(84 %)
20 diff
(97.9 %id)
TI_44349661   .b 110 to 890 88 to 863       776/1005
(77 %)
20 diff
(98.1 %id)
AK130273 Prostate .b 727 to 2865 1 to 2139   tiling clone, available from FLJ,   2139/2139
(100 %)
1 diff
(100.0 %id)
AA016308 eye, retina .b 2444 to 2865 435 to 13   AAA   423/423
(100 %)
2 diff
(99.6 %id)
BF974702 B-cells, primary B-cells from tonsils (cell line) .c 1 to 727 1 to 738   tiling clone,   738/1175
(62 %)
19 diff
(98.4 %id)
NM_004086.2   .c 13 to 2570 1 to 2558 exact RefSeq,   2558/2558
(100 %)
0 diff
(100 %id)
CN410173 embryonic stem cells, cell lines H1, H7, andH9 .c 18 to 614 1 to 597       597/597
(100 %)
1 diff
(99.9 %id)
AF006740   .c 37 to 2570 1 to 2534 exact tiling clone,   2534/2534
(100 %)
0 diff
(100 %id)
AK292724 kidney, tumor tissue .c 37 to 1876 1 to 1840 exact     1840/1840
(100 %)
1 diff
(100.0 %id)
AW579554 head_neck .c 37 to 464 12 to 453       440/479
(91 %)
28 diff
(94.2 %id)
BI667395 brain, hypothalamus .c 37 to 787 7 to 759       753/759
(99 %)
17 diff
(97.8 %id)
TI_44343353   .c 37 to 787 94 to 846       753/846
(89 %)
17 diff
(98.0 %id)
DA164237 amygdala .c 38 to 602 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA260858 caudate nucleus .c 38 to 609 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA840469 placenta .c 38 to 583 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DB167899 kidney, tumor tissue .c 38 to 605 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA266313 caudate nucleus .c 40 to 561 2 to 523   capped   522/522
(100 %)
0 diff
(100 %id)
DA272057 caudate nucleus .c 40 to 661 2 to 623   capped   622/622
(100 %)
0 diff
(100 %id)
DA707150   .c 40 to 618 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA949218 Spleen .c 40 to 578 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
DB498253.
matches multiple genes
hypothalamus .c 41 to 555 1 to 515     also hits gene jupu 515/515
(100 %)
2 diff
(99.7 %id)
BG396678 eye, retinoblastoma .c 49 to 704 1 to 655       655/655
(100 %)
4 diff
(99.4 %id)
BC018827 Eye, retinoblastoma .c 50 to 2095 1 to 2045 V294S N295M V296Y F297L I298* available from MGC, AAA   2045/2045
(100 %)
4 diff
(99.9 %id)
BC000640 Eye, retinoblastoma .c 50 to 2095 1 to 2045 V294S N295M V296Y F297L I298* available from MGC, AAA   2045/2045
(100 %)
4 diff
(99.9 %id)
BX375927 Neuroblastoma Cot 25-normalized .c 60 to 1051 1 to 989       989/1050
(94 %)
11 diff
(99.0 %id)
BX439039 placenta .c 60 to 1052 1 to 992       992/992
(100 %)
14 diff
(98.6 %id)
BX445649 placenta .c 60 to 872 1 to 813       813/813
(100 %)
4 diff
(99.6 %id)
Z42204 brain, total brain .c 61 to 358 1 to 298       298/298
(100 %)
0 diff
(100 %id)
BE259324 eye, retinoblastoma .c 67 to 630 1 to 564   available from MGC,   564/564
(100 %)
0 diff
(100 %id)
F01733 brain, total brain .c 1868 to 2089 222 to 1       222/222
(100 %)
0 diff
(100 %id)
BQ650378 hepatocellular carcinoma, cell line, Liver .d 1 to 857 1 to 859   tiling clone,   859/958
(89 %)
32 diff
(96.7 %id)
BQ644524 hepatocellular carcinoma, cell line, Liver .d 16 to 791 1 to 783       783/923
(84 %)
13 diff
(98.6 %id)
AW629100 pooled .d 17 to 646 1 to 630     Submitted on the opposite strand 630/632
(99 %)
3 diff
(99.6 %id)
NM_001135058.1   .d 17 to 2898 1 to 2882 exact RefSeq,   2882/2882
(100 %)
0 diff
(100 %id)
BF512574   .d 18 to 490 1 to 473     Submitted on the opposite strand 473/473
(100 %)
1 diff
(99.8 %id)
CR611655 Neuroblastoma Cot 10-normalized .d 25 to 2381 1 to 2357 exact tiling clone,   2357/2357
(100 %)
0 diff
(100 %id)
BX374472 Neuroblastoma Cot 10-normalized .d 25 to 1043 1 to 1011       1011/1011
(100 %)
20 diff
(98.1 %id)
AY358900   .d 26 to 2417 1 to 2392 exact AAA   2392/2392
(100 %)
1 diff
(100.0 %id)
DA905495   .d 32 to 287 2 to 257   capped   256/256
(100 %)
0 diff
(100 %id)
BX416085 neuroblastoma .d 37 to 1139 1 to 1087       1087/1102
(98 %)
23 diff
(98.0 %id)
BX445471 neuroblastoma .d 37 to 952 1 to 912       912/912
(100 %)
20 diff
(97.9 %id)
DA251073 caudate nucleus .d 42 to 611 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA350715 substantia nigra .d 42 to 566 2 to 529   capped   528/528
(100 %)
3 diff
(99.5 %id)
DA260912 caudate nucleus .d 44 to 615 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA276948 corpus callosum .d 44 to 595 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA902939   .d 44 to 420 2 to 378   capped   377/377
(100 %)
0 diff
(100 %id)
DB152986 thymus .d 44 to 617 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
AA199906   .d 70 to 461 12 to 408       397/472
(84 %)
13 diff
(97.3 %id)
R13016 whole brain .d 414 to 858 1 to 453       453/476
(95 %)
15 diff
(96.9 %id)
R12146 whole brain .d 740 to 1130 1 to 397       397/445
(89 %)
14 diff
(96.9 %id)
F07138 brain, total brain .d 865 to 1204 1 to 339       339/339
(100 %)
1 diff
(99.8 %id)
R19904 whole brain .d 865 to 1274 1 to 421       421/423
(99 %)
18 diff
(95.8 %id)
H17745 whole brain .d 866 to 1431 1 to 573       573/573
(100 %)
20 diff
(96.6 %id)
BU165034 eye, retinoblastoma .d 998 to 1935 1 to 945       945/945
(100 %)
12 diff
(98.8 %id)
CR614743 B cells (Ramos cell line) Cot 25-normalized .d 1006 to 2381 1 to 1376       1376/1376
(100 %)
0 diff
(100 %id)
BX342575   .d 1006 to 1919 1 to 913   fully sequenced,   913/913
(100 %)
2 diff
(99.8 %id)
BX367978 Neuroblastoma Cot 10-normalized .d 1142 to 1937 795 to 1       795/824
(96 %)
29 diff
(96.5 %id)
BX388870 Neuroblastoma Cot 10-normalized .d 1143 to 2018 880 to 1       880/880
(100 %)
33 diff
(96.3 %id)
R61662 whole brain .d 1166 to 1586 1 to 428       428/431
(99 %)
9 diff
(98.0 %id)
BU159461 eye, retinoblastoma .d 1246 to 2112 1 to 872       872/877
(99 %)
16 diff
(98.2 %id)
BX421290 B cells (Ramos cell line) .d 1300 to 2406 1101 to 5       1097/1119
(98 %)
20 diff
(98.3 %id)
BX375926 Neuroblastoma Cot 25-normalized .d 1309 to 2395 1078 to 1       1078/1128
(95 %)
10 diff
(99.2 %id)
BX416084 neuroblastoma .d 1328 to 2363 1039 to 12       1028/1086
(94 %)
38 diff
(96.6 %id)
BI495106 cochlea, ear .d 1379 to 1924 20 to 565   fully sequenced,   546/565
(96 %)
6 diff
(99.0 %id)
BX374471 Neuroblastoma Cot 10-normalized .d 1402 to 2357 977 to 24       954/981
(97 %)
38 diff
(96.2 %id)
BX445470 neuroblastoma .d 1420 to 2382 959 to 1       959/959
(100 %)
44 diff
(95.5 %id)
N50251 multiple sclerosis lesions .d 1489 to 1643 23 to 177       155/177
(87 %)
10 diff
(94.4 %id)
BQ430877 embryonal carcinoma, cell line, testis .d 1572 to 2112 13 to 558   AAA   546/930
(58 %)
32 diff
(96.6 %id)
BX408414 placenta .d 1615 to 2506 889 to 1       889/889
(100 %)
11 diff
(98.8 %id)
AV709175 adrenal gland .d 1632 to 2050 1 to 419       419/419
(100 %)
0 diff
(100 %id)
CD679268 eye, Trabecular meshwork .d 1640 to 2151 1 to 512       512/512
(100 %)
0 diff
(100 %id)
DV460249 cochlea, ear .d 1642 to 2106 486 to 21     Submitted on the opposite strand 466/502
(92 %)
11 diff
(97.9 %id)
DV462139 cochlea, ear .d 1647 to 2104 1 to 458       458/458
(100 %)
2 diff
(99.6 %id)
DV461264 cochlea, ear .d 1647 to 2103 458 to 2     Submitted on the opposite strand 457/458
(99 %)
1 diff
(99.8 %id)
DV459292 cochlea, ear .d 1647 to 2104 458 to 1     Submitted on the opposite strand 458/458
(100 %)
3 diff
(99.4 %id)
DV462827 cochlea, ear .d 1647 to 2104 458 to 1     Submitted on the opposite strand 458/458
(100 %)
2 diff
(99.6 %id)
DV460537 cochlea, ear .d 1647 to 2095 1 to 452       452/460
(98 %)
21 diff
(95.5 %id)
DV459646 cochlea, ear .d 1647 to 2101 1 to 455       455/457
(99 %)
3 diff
(99.4 %id)
DV459324 cochlea, ear .d 1649 to 2108 460 to 1     Submitted on the opposite strand 460/462
(99 %)
6 diff
(98.8 %id)
DV461659 cochlea, ear .d 1660 to 2104 445 to 1     Submitted on the opposite strand 445/445
(100 %)
4 diff
(99.2 %id)
DV460072 cochlea, ear .d 1703 to 2110 1 to 407       407/429
(94 %)
11 diff
(97.5 %id)
DV460765 cochlea, ear .d 1723 to 2109 402 to 7     Submitted on the opposite strand 396/404
(98 %)
13 diff
(96.8 %id)
AA203418 liver and spleen .d 1733 to 2304 1 to 569       569/570
(99 %)
9 diff
(98.5 %id)
CD676547 eye, Trabecular meshwork .d 1765 to 2383 1 to 619       619/619
(100 %)
0 diff
(100 %id)
DV459179 cochlea, ear .d 1765 to 2104 1 to 340       340/340
(100 %)
2 diff
(99.5 %id)
BQ002467 Chondrosarcoma, Left Pelvis .d 1809 to 2423 633 to 19   AAA   615/615
(100 %)
0 diff
(100 %id)
AW021473 cochlea, ear .d 1814 to 2306 1 to 493       493/493
(100 %)
5 diff
(99.0 %id)
BI492430 cochlea, ear .d 1815 to 2417 624 to 22   AAA   603/604
(99 %)
5 diff
(99.2 %id)
AA626668 lung, lung carcinoma .d 1819 to 2234 1 to 415       415/415
(100 %)
3 diff
(99.3 %id)
DV460324 cochlea, ear .d 1819 to 2106 293 to 6     Submitted on the opposite strand 288/293
(98 %)
2 diff
(99.4 %id)
U09203 cochlea (membranous labyrinth) .d 1821 to 2020 1 to 200       200/200
(100 %)
0 diff
(100 %id)
DV459932 cochlea, ear .d 1830 to 2104 1 to 275       275/275
(100 %)
13 diff
(95.3 %id)
AA669336 lung, lung carcinoma .d 1831 to 2409 579 to 1       579/579
(100 %)
1 diff
(99.9 %id)
BI496193 cochlea, ear .d 1831 to 2417 626 to 40   AAA   587/587
(100 %)
3 diff
(99.5 %id)
AA480780 Kidney .d 1836 to 2174 1 to 339       339/339
(100 %)
4 diff
(98.9 %id)
DV460336 cochlea, ear .d 1839 to 2104 1 to 266       266/266
(100 %)
11 diff
(95.9 %id)
AW969829   .d 1840 to 2368 109 to 637       529/637
(83 %)
7 diff
(99.0 %id)
DV461069 cochlea, ear .d 1840 to 2099 1 to 260       260/260
(100 %)
4 diff
(98.5 %id)
DV462734 cochlea, ear .d 1841 to 2104 264 to 1     Submitted on the opposite strand 264/264
(100 %)
2 diff
(99.3 %id)
AI830202 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .d 1849 to 2423 575 to 1       575/575
(100 %)
4 diff
(99.4 %id)
DV459827 cochlea, ear .d 1860 to 2368 509 to 1     Submitted on the opposite strand 509/509
(100 %)
0 diff
(100 %id)
BX342574   .d 1867 to 2381 514 to 1   fully sequenced,   514/514
(100 %)
5 diff
(99.1 %id)
BI495105 cochlea, ear .d 1867 to 2409 543 to 1   fully sequenced,   543/543
(100 %)
2 diff
(99.7 %id)
DV459105 cochlea, ear .d 1894 to 2104 1 to 211       211/211
(100 %)
0 diff
(100 %id)
DV460129 cochlea, ear .d 1895 to 2104 1 to 210       210/210
(100 %)
2 diff
(99.1 %id)
DV460722 cochlea, ear .d 1927 to 2104 1 to 178       178/178
(100 %)
1 diff
(99.5 %id)
R40402 whole brain .d 1935 to 2417 508 to 11   AAA   498/498
(100 %)
20 diff
(96.0 %id)
N67291 cochlea, ear .d 1935 to 2413 482 to 4       479/483
(99 %)
0 diff
(100 %id)
DV462418 cochlea, ear .d 1945 to 2104 1 to 160       160/160
(100 %)
1 diff
(99.4 %id)
R15079 whole brain .d 1995 to 2417 442 to 13   AAA   430/430
(100 %)
10 diff
(97.7 %id)
N49197 multiple sclerosis lesions .d 1996 to 2417 425 to 1       425/426
(99 %)
4 diff
(99.1 %id)
R43417 whole brain .d 2013 to 2397 385 to 1       385/385
(100 %)
11 diff
(97.2 %id)
BX445648 placenta .d 2014 to 2875 863 to 1       863/863
(100 %)
22 diff
(97.5 %id)
AA199816   .d 2040 to 2425 394 to 1       394/402
(98 %)
18 diff
(95.6 %id)
BI493033 cochlea, ear .d 2048 to 2423 418 to 43   AAA   376/383
(98 %)
0 diff
(100 %id)
AW022069 cochlea, ear .d 2048 to 2423 8 to 384   AAA   377/384
(98 %)
6 diff
(98.5 %id)
R45126 whole brain .d 2063 to 2421 384 to 3       382/428
(89 %)
0 diff
(100 %id)
AW022418 cochlea, ear .d 2067 to 2414 8 to 355   AAA   348/355
(98 %)
6 diff
(98.4 %id)
BI495657 cochlea, ear .d 2067 to 2417 8 to 358   AAA   351/358
(98 %)
6 diff
(98.4 %id)
AA976677 carcinoid, lung .d 2078 to 2132 55 to 1       55/55
(100 %)
1 diff
(98.2 %id)
DV461843 cochlea, ear .d 2080 to 2257 1 to 178       178/178
(100 %)
1 diff
(99.5 %id)
N67375 cochlea, ear .d 2083 to 2413 333 to 3       331/333
(99 %)
0 diff
(100 %id)
DV462790 cochlea, ear .d 2098 to 2254 1 to 157       157/157
(100 %)
5 diff
(96.9 %id)
DV462154 cochlea, ear .d 2102 to 2257 1 to 156       156/156
(100 %)
2 diff
(98.8 %id)
DV461814 cochlea, ear .d 2102 to 2256 1 to 155       155/156
(99 %)
2 diff
(98.8 %id)
DV460638 cochlea, ear .d 2103 to 2257 12 to 166       155/166
(93 %)
6 diff
(96.4 %id)
DV459718 cochlea, ear .d 2103 to 2256 13 to 166       154/167
(92 %)
2 diff
(98.9 %id)
DV459623 cochlea, ear .d 2103 to 2257 10 to 164       155/164
(94 %)
6 diff
(96.4 %id)
DV461028 cochlea, ear .d 2103 to 2257 1 to 155       155/155
(100 %)
1 diff
(99.4 %id)
DV461377 cochlea, ear .d 2104 to 2257 1 to 154       154/154
(100 %)
1 diff
(99.4 %id)
DV462029 cochlea, ear .d 2104 to 2257 1 to 154       154/154
(100 %)
0 diff
(100 %id)
DV460157 cochlea, ear .d 2104 to 2257 10 to 163       154/163
(94 %)
6 diff
(96.4 %id)
DV461202 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV459600 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV462144 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
1 diff
(99.4 %id)
DV459248 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV460542 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV460690 cochlea, ear .d 2105 to 2257 1 to 154       154/154
(100 %)
6 diff
(96.2 %id)
DV461684 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV462551 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
1 diff
(99.4 %id)
DV460515 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV462599 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV459472 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV459773 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
1 diff
(99.4 %id)
DV460528 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV461728 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
1 diff
(99.4 %id)
DV459720 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
2 diff
(98.7 %id)
DV459017 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
1 diff
(99.4 %id)
DV459045 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
1 diff
(99.4 %id)
DV461532 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
3 diff
(98.1 %id)
DV461614 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
1 diff
(99.4 %id)
DV462735 cochlea, ear .d 2105 to 2257 11 to 163       153/163
(93 %)
6 diff
(96.4 %id)
DV461650 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
1 diff
(99.4 %id)
DV461732 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV462765 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV462777 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
1 diff
(99.4 %id)
DV460138 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV461941 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV459231 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV460547 cochlea, ear .d 2105 to 2257 1 to 159       159/159
(100 %)
5 diff
(96.9 %id)
DV461553 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV459925 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV460902 cochlea, ear .d 2105 to 2257 12 to 164       153/164
(93 %)
6 diff
(96.4 %id)
DV461036 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV461043 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV462036 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV462048 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
1 diff
(99.4 %id)
DV459212 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV460170 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV460672 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV460718 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
3 diff
(98.1 %id)
DV460904 cochlea, ear .d 2105 to 2257 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DV461444 cochlea, ear .d 2106 to 2416 1 to 311   AAA   311/311
(100 %)
0 diff
(100 %id)
DV459366 cochlea, ear .d 2106 to 2257 12 to 163       152/163
(93 %)
6 diff
(96.4 %id)
DV460047 cochlea, ear .d 2108 to 2257 1 to 150       150/150
(100 %)
0 diff
(100 %id)
DV462203 cochlea, ear .d 2108 to 2257 9 to 158       150/158
(94 %)
6 diff
(96.3 %id)
DV459782 cochlea, ear .d 2108 to 2257 1 to 150       150/150
(100 %)
0 diff
(100 %id)
AI669544 Prostate .d 2122 to 2423 302 to 1       302/302
(100 %)
1 diff
(99.7 %id)
DV461777 cochlea, ear .d 2123 to 2257 1 to 135       135/135
(100 %)
5 diff
(96.3 %id)
Z40241 brain, total brain .d 2140 to 2417 278 to 1       278/278
(100 %)
0 diff
(100 %id)
AA311438   .d 2148 to 2417 1 to 270       270/270
(100 %)
0 diff
(100 %id)
BI495912 cochlea, ear .d 2178 to 2241 64 to 1       64/64
(100 %)
3 diff
(95.4 %id)
AA411944   .d 2208 to 2425 218 to 1       218/218
(100 %)
0 diff
(100 %id)
DV459140 cochlea, ear .d 2254 to 2368 1 to 115       115/115
(100 %)
2 diff
(98.3 %id)
H17632 whole brain .d 2262 to 2425 172 to 7       166/172
(96 %)
0 diff
(100 %id)
H89002 cochlea, ear .d 2267 to 2605 1 to 346   tiling clone,   346/352
(98 %)
9 diff
(97.5 %id)
BI492712 cochlea, ear .d 2267 to 2404 138 to 1       138/145
(95 %)
2 diff
(98.7 %id)
AW021781.
matches multiple genes
cochlea, ear .d 2267 to 2425 8 to 166     also hits gene komema 159/187
(85 %)
1 diff
(99.5 %id)
GD150354   .d 2360 to 2416 7 to 63   AAA   57/63
(90 %)
0 diff
(100 %id)
BX098283 whole brain .d 2401 to 2898 514 to 15   tiling clone, AAA   500/500
(100 %)
2 diff
(99.6 %id)
AW242544 Kidney .d 2489 to 2900 435 to 1   tiling clone,   435/435
(100 %)
20 diff
(95.5 %id)
DV459568 cochlea, ear .d 2503 to 2633 1 to 131       131/131
(100 %)
5 diff
(96.2 %id)
DV460511 cochlea, ear .d 2510 to 2754 1 to 247       247/247
(100 %)
6 diff
(97.6 %id)
DV459168 cochlea, ear .d 2512 to 2766 1 to 255       255/255
(100 %)
3 diff
(98.9 %id)
DV462519 cochlea, ear .d 2515 to 2766 252 to 1     Submitted on the opposite strand 252/252
(100 %)
0 diff
(100 %id)
DV461214 cochlea, ear .d 2515 to 2772 260 to 1     Submitted on the opposite strand 260/260
(100 %)
5 diff
(98.1 %id)
DV461733 cochlea, ear .d 2515 to 2766 252 to 1     Submitted on the opposite strand 252/252
(100 %)
0 diff
(100 %id)
DV462674 cochlea, ear .d 2515 to 2766 1 to 252       252/252
(100 %)
1 diff
(99.7 %id)
DV461268 cochlea, ear .d 2515 to 2765 251 to 2     Submitted on the opposite strand 250/251
(99 %)
0 diff
(100 %id)
DV459267 cochlea, ear .d 2515 to 2766 1 to 252       252/252
(100 %)
1 diff
(99.7 %id)
DV460493 cochlea, ear .d 2515 to 2766 253 to 1     Submitted on the opposite strand 253/253
(100 %)
4 diff
(98.5 %id)
DV462635 cochlea, ear .d 2515 to 2766 1 to 253       253/253
(100 %)
1 diff
(99.7 %id)
DV461711 cochlea, ear .d 2515 to 2766 1 to 252       252/252
(100 %)
0 diff
(100 %id)
DV461967 cochlea, ear .d 2515 to 2765 1 to 251       251/252
(99 %)
1 diff
(99.7 %id)
DV462183 cochlea, ear .d 2515 to 2766 1 to 252       252/252
(100 %)
0 diff
(100 %id)
DV461825 cochlea, ear .d 2515 to 2766 252 to 1     Submitted on the opposite strand 252/252
(100 %)
0 diff
(100 %id)
DV462090 cochlea, ear .d 2515 to 2766 252 to 1     Submitted on the opposite strand 252/252
(100 %)
0 diff
(100 %id)
DV460508 cochlea, ear .d 2517 to 2766 1 to 250       250/250
(100 %)
0 diff
(100 %id)
R60995 whole brain .d 2522 to 2898 402 to 22   tiling clone, AAA   381/433
(87 %)
8 diff
(98.2 %id)
H89900 cochlea, ear .d 2565 to 2889 1 to 323   fully sequenced,   323/323
(100 %)
9 diff
(97.3 %id)
H89901 cochlea, ear .d 2685 to 2843 154 to 1   fully sequenced,   154/154
(100 %)
2 diff
(98.8 %id)
BC007230 Lung, small cell carcinoma .e 1 to 1985 1 to 1985 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 1985/1985
(100 %)
0 diff
(100 %id)
AW249453 lung, small cell carcinoma .e 1 to 223 11 to 235       225/236
(95 %)
7 diff
(97.1 %id)
AW249158 lung, small cell carcinoma .e 1 to 417 10 to 426       417/432
(96 %)
6 diff
(98.7 %id)
BE207248 lung, small cell carcinoma .e 2 to 576 1 to 572       572/579
(98 %)
4 diff
(99.4 %id)
BX421291 B cells (Ramos cell line) .e 5 to 985 1 to 974       974/982
(99 %)
8 diff
(99.2 %id)
AW269660 pooled .e 6 to 586 1 to 581     Submitted on the opposite strand 581/581
(100 %)
7 diff
(98.8 %id)
DA257375 caudate nucleus .e 7 to 464 2 to 460   capped   459/459
(100 %)
1 diff
(99.8 %id)
BX384806   .e 8 to 984 1 to 969       969/977
(99 %)
46 diff
(95.3 %id)
CN410172 embryonic stem cells, DMSO-treated H9 cellline .e 20 to 536 1 to 517       517/517
(100 %)
3 diff
(99.5 %id)
BE797124 lung, small cell carcinoma .e 20 to 732 1 to 720       720/794
(90 %)
14 diff
(98.3 %id)
BE795018 lung, small cell carcinoma .e 20 to 818 1 to 796       796/973
(81 %)
12 diff
(98.8 %id)
DA813043   .e 58 to 810 2 to 757   capped   756/781
(96 %)
8 diff
(99.0 %id)
DA178975 amygdala .e 87 to 671 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DA271668 caudate nucleus .e 87 to 658 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA294545 hippocampus .e 87 to 667 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA271778 caudate nucleus .e 111 to 396 2 to 288   capped   287/287
(100 %)
1 diff
(99.7 %id)
DA275931 corpus callosum .e 111 to 660 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
DA259494 caudate nucleus .e 166 to 738 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA269318 caudate nucleus .e 169 to 715 2 to 548   capped   547/547
(100 %)
3 diff
(99.5 %id)
DA269296 caudate nucleus .e 171 to 719 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
BP240233 Liver .e 171 to 719 1 to 550       550/550
(100 %)
5 diff
(99.1 %id)
DA263279 caudate nucleus .e 191 to 762 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA256206 caudate nucleus .e 193 to 759 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA274687 corpus callosum .e 193 to 751 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
BY800000 eye .e 204 to 828 1 to 625       625/625
(100 %)
1 diff
(99.9 %id)
BM047071 carcinoma, cell line, Prostate .e 230 to 796 1 to 568       568/639
(88 %)
6 diff
(99.1 %id)
BQ887456 carcinoma, cell line, Prostate .e 232 to 1057 1 to 836       836/844
(99 %)
16 diff
(98.2 %id)
BM049192 carcinoma, cell line, Prostate .e 233 to 960 1 to 726       726/728
(99 %)
21 diff
(97.2 %id)
DB049043 testis .e 244 to 804 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
BE780396 eye, retinoblastoma .e 348 to 502 1 to 156       156/156
(100 %)
5 diff
(96.8 %id)
TI_1948094305   .e 361 to 1131 124 to 897   fully sequenced,   774/897
(86 %)
8 diff
(99.2 %id)
TI_1948094448   .e 361 to 1104 126 to 869   fully sequenced,   744/869
(85 %)
8 diff
(99.1 %id)
TI_1948094600   .e 361 to 1168 123 to 937   fully sequenced,   815/937
(86 %)
10 diff
(99.0 %id)
TI_1948094757   .e 361 to 1104 126 to 869       744/1283
(57 %)
10 diff
(99.3 %id)
DA199834 brain .e 362 to 947 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
CV027063 mixed .e 368 to 967 1 to 600       600/600
(100 %)
0 diff
(100 %id)
DB497711.
matches multiple genes
hypothalamus .e 523 to 1020 1 to 498     also hits gene jupu 498/498
(100 %)
1 diff
(99.8 %id)
DB501051.
matches multiple genes
hypothalamus .e 523 to 1016 1 to 494     also hits gene jupu 494/494
(100 %)
1 diff
(99.8 %id)
BX429188 neuroblastoma .e 625 to 1405 1 to 776       776/844
(91 %)
24 diff
(97.2 %id)
BM763613 myeloma .e 669 to 1168 1 to 500       500/500
(100 %)
0 diff
(100 %id)
BM763364 myeloma .e 669 to 919 1 to 251       251/251
(100 %)
0 diff
(100 %id)
BX347211 Neuroblastoma Cot 10-normalized .e 688 to 1325 1 to 636       636/945
(67 %)
3 diff
(99.7 %id)
AA431035   .e 781 to 1104 1 to 326       324/335
(96 %)
31 diff
(90.8 %id)
BX347412   .e 801 to 1697 1 to 894       894/894
(100 %)
4 diff
(99.6 %id)
H12904 whole brain .e 810 to 1100 1 to 292       292/292
(100 %)
2 diff
(99.4 %id)
BM847703 myeloma .e 850 to 964 1 to 115       115/115
(100 %)
0 diff
(100 %id)
BX408865 B cells (Ramos cell line) .e 851 to 1112 1 to 261       261/266
(98 %)
6 diff
(97.8 %id)
BX450424 neuroblastoma .e 877 to 1717 835 to 1       835/855
(97 %)
13 diff
(98.5 %id)
AW022246 cochlea, ear .e 938 to 1371 23 to 456       434/456
(95 %)
6 diff
(98.7 %id)
CN410171 embryonic stem cells, cell lines H1, H7, andH9 .e 940 to 1615 1 to 677       677/677
(100 %)
2 diff
(99.8 %id)
BI116915 lung, small cell carcinoma .e 950 to 1722 1 to 784       784/872
(89 %)
26 diff
(97.1 %id)
BX408957 B cells (Ramos cell line) .e 984 to 1477 508 to 12       497/613
(81 %)
15 diff
(97.6 %id)
BX326081 Neuroblastoma Cot 25-normalized .e 987 to 1661 692 to 15       678/847
(80 %)
14 diff
(98.4 %id)
AW852330 colon .e 999 to 1481 486 to 4       483/486
(99 %)
0 diff
(100 %id)
AV751982 Pituitary .e 1024 to 1636 1 to 614       614/826
(74 %)
30 diff
(96.4 %id)
TI_1948094306   .e 1070 to 1850 911 to 122   fully sequenced,   793/914
(86 %)
11 diff
(98.8 %id)
TI_1948094449   .e 1070 to 1851 911 to 124   fully sequenced,   788/911
(86 %)
4 diff
(99.6 %id)
TI_1948094758   .e 1104 to 1850 870 to 120       754/1225
(61 %)
7 diff
(99.5 %id)
TI_1948094601   .e 1138 to 1850 836 to 120   fully sequenced,   720/839
(85 %)
9 diff
(99.0 %id)
BI497013 cochlea, ear .e 1212 to 1842 1 to 631       631/631
(100 %)
5 diff
(99.3 %id)
BF827390 head_normal .e 1225 to 1672 461 to 15     Submitted on the opposite strand 447/461
(96 %)
0 diff
(100 %id)
BI497225 cochlea, ear .e 1306 to 1746 8 to 448       441/448
(98 %)
6 diff
(98.7 %id)
AA353917   .e 1310 to 1604 1 to 295       295/295
(100 %)
1 diff
(99.7 %id)
BE503793 carcinoid, lung .e 1466 to 1986 521 to 1       521/521
(100 %)
6 diff
(98.9 %id)
BG149573 carcinoid, lung .e 1469 to 1990 524 to 1       524/524
(100 %)
6 diff
(98.9 %id)
AW250069 lung, small cell carcinoma .e 1563 to 1995 433 to 1       433/433
(100 %)
4 diff
(99.1 %id)
AW248733 lung, small cell carcinoma .e 1814 to 1995 182 to 1   tiling clone,   182/182
(100 %)
7 diff
(96.2 %id)
BX371283   .e 1839 to 2550 716 to 1   tiling clone,   716/716
(100 %)
49 diff
(93.2 %id)
BI496548 cochlea, ear .e 2026 to 2439 8 to 421   tiling clone,   414/421
(98 %)
6 diff
(98.6 %id)
BI497031 cochlea, ear .e 2031 to 2519 1 to 490   tiling clone,   490/490
(100 %)
6 diff
(98.8 %id)
BX352581   .e 2062 to 2543 484 to 1   tiling clone,   484/534
(90 %)
25 diff
(95.4 %id)
AA484215 Kidney .e 2138 to 2335 1 to 198       198/205
(96 %)
2 diff
(99.1 %id)
FN118325 breast carcinoma .e 2158 to 2246 1 to 91       91/96
(94 %)
3 diff
(96.9 %id)
FN059431 breast carcinoma .e 2357 to 2443 1 to 87       87/87
(100 %)
0 diff
(100 %id)
FN148352 breast carcinoma .e 2357 to 2435 1 to 77       77/77
(100 %)
6 diff
(92.3 %id)
BF967481 brain, hypothalamus .f 1 to 789 1 to 782   tiling clone,   782/884
(88 %)
22 diff
(97.6 %id)
BG705913 brain, hypothalamus .f 1 to 805 1 to 802   tiling clone,   802/802
(100 %)
16 diff
(98.1 %id)
BI602790 brain, hypothalamus .f 1 to 672 1 to 672       672/672
(100 %)
8 diff
(98.9 %id)
BI603590 brain, hypothalamus .f 3 to 788 1 to 780   tiling clone,   780/829
(94 %)
31 diff
(96.3 %id)
DB500951 hypothalamus .f 6 to 495 1 to 490       490/490
(100 %)
0 diff
(100 %id)
TI_45210164   .f 6 to 788 94 to 868       775/917
(84 %)
32 diff
(96.6 %id)
TI_45212503   .f 6 to 672 92 to 758       667/758
(87 %)
9 diff
(98.9 %id)
BF967556 brain, hypothalamus .f 1002 to 1760 760 to 2   tiling clone,   759/764
(99 %)
18 diff
(97.7 %id)
BM466729 eye, retinoblastoma .g 1 to 609 6 to 613 S17I E18* tiling clone,   741/1182
(62 %)
24 diff
(98.0 %id)
DA512653 brain .h 1 to 672 3 to 669   tiling clone, capped   668/714
(93 %)
6 diff
(99.2 %id)
BG221271   .h 457 to 1117 67 to 732   tiling clone,   666/829
(80 %)
50 diff
(94.0 %id)
DB521220.
matches multiple genes
testis .h 1050 to 1456 407 to 1   tiling clone, also hits gene jupu 407/425
(95 %)
0 diff
(100 %id)
AW023479 cochlea, ear .h 1409 to 1826 8 to 425   tiling clone,   418/425
(98 %)
6 diff
(98.6 %id)
DV460438 cochlea, ear .h 1461 to 1646 1 to 186       186/186
(100 %)
1 diff
(99.5 %id)
AV692084 hepatocellular carcinoma .h 1494 to 1888 1 to 390   tiling clone,   390/390
(100 %)
2 diff
(99.5 %id)
AV693173 hepatocellular carcinoma .h 1494 to 1867 1 to 370       370/378
(97 %)
3 diff
(99.3 %id)
AV697200 hepatocellular carcinoma .h 1494 to 1840 1 to 344       344/346
(99 %)
7 diff
(98.0 %id)
AV698316 hepatocellular carcinoma .h 1494 to 1849 1 to 351       351/354
(99 %)
3 diff
(99.2 %id)
AA947980 pooled .h 1585 to 1820 235 to 1       235/235
(100 %)
7 diff
(97.1 %id)
AW612757 carcinoid, lung .h 1720 to 1897 178 to 1   tiling clone,   178/178
(100 %)
8 diff
(95.6 %id)
DB316439 brain .h 1803 to 2417 611 to 1   tiling clone,   611/611
(100 %)
19 diff
(96.9 %id)
CN410170 embryonic stem cells, cell lines H1, H7, andH9 .i 1 to 704 13 to 716 D151R C152L K153* tiling clone,   702/716
(98 %)
6 diff
(99.2 %id)
AA572712   .j-u 1 to 506 12 to 517       506/517
(97 %)
11 diff
(97.9 %id)
AA579156   .j-u 1 to 293 12 to 304   tiling clone,   293/304
(96 %)
10 diff
(96.8 %id)
R15125 whole brain .j-u 21 to 388 1 to 379       379/379
(100 %)
25 diff
(93.5 %id)
AA418918 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .j-u 80 to 573 1 to 493   tiling clone,   493/493
(100 %)
5 diff
(99.0 %id)
EC468930 Prostate .j-u 85 to 187 1 to 101       101/101
(100 %)
5 diff
(95.1 %id)
EC529905 Prostate .j-u 85 to 187 1 to 102       102/102
(100 %)
4 diff
(96.1 %id)
AV742803 cord Blood .j-u 87 to 449 46 to 404       359/414
(86 %)
6 diff
(98.6 %id)
AW384333 head_neck .j-u 137 to 761 43 to 660       618/660
(93 %)
6 diff
(99.1 %id)
FN121187 breast carcinoma .j-u 168 to 287 1 to 118       118/118
(100 %)
2 diff
(98.4 %id)
TI_159717261   .j-u 172 to 1186 1062 to 68 exact tiling clone,   995/1088
(91 %)
0 diff
(100 %id)
FN070761 breast carcinoma .j-u 180 to 289 1 to 113       113/120
(94 %)
4 diff
(96.7 %id)
FN086795 breast carcinoma .j-u 197 to 319 1 to 127       127/127
(100 %)
4 diff
(96.9 %id)
GD149482   .j-u 286 to 349 1 to 64       64/65
(98 %)
4 diff
(93.9 %id)
GD149565   .j-u 290 to 349 1 to 59       59/60
(98 %)
4 diff
(93.4 %id)
GD149572   .j-u 290 to 349 1 to 59       59/60
(98 %)
4 diff
(93.4 %id)
BQ311813 breast_normal .j-u 379 to 725 31 to 381       351/381
(92 %)
6 diff
(98.5 %id)
BP425744 small intestine .j-u 398 to 546 150 to 2       149/150
(99 %)
0 diff
(100 %id)
FN131775 breast carcinoma .j-u 445 to 581 1 to 130       130/130
(100 %)
7 diff
(94.7 %id)
CB852601 Human Lung Epithelial cells, lung .j-u 472 to 1186 731 to 17 exact     715/731
(97 %)
0 diff
(100 %id)
AW198224 adenocarcinoma, Pancreas .j-u 515 to 628 114 to 1       114/114
(100 %)
0 diff
(100 %id)
FN156557 breast carcinoma .j-u 549 to 665 1 to 116       116/116
(100 %)
1 diff
(99.2 %id)
BE844255 testis_normal .j-u 571 to 1045 1 to 471 exact     471/471
(100 %)
11 diff
(97.7 %id)
BU615378 Bone, Human Chondrosarcoma Cell Line .j-u 632 to 1273 644 to 1 exact     644/644
(100 %)
5 diff
(99.3 %id)
FN111328 breast carcinoma .j-u 684 to 749 1 to 64       64/67
(95 %)
4 diff
(94.1 %id)
AA663103   .j-u 769 to 1134 366 to 1       366/366
(100 %)
0 diff
(100 %id)
AA808621 carcinoid, lung .j-u 771 to 1258 490 to 1       490/490
(100 %)
1 diff
(99.8 %id)
AW001731 Kidney .j-u 790 to 1254 466 to 1       466/466
(100 %)
2 diff
(99.6 %id)
AA418821 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .j-u 816 to 1255 441 to 1       441/441
(100 %)
1 diff
(99.8 %id)
AW134626   .j-u 816 to 1272 458 to 1       458/458
(100 %)
1 diff
(99.8 %id)
AA836616 germinal center B cell .j-u 933 to 1255 343 to 20   AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 324/324
(100 %)
1 diff
(99.7 %id)
AI470372 pooled .j-u 941 to 1255 316 to 1       316/316
(100 %)
1 diff
(99.7 %id)
FN075708 breast carcinoma .j-u 985 to 1043 1 to 57       57/57
(100 %)
2 diff
(96.5 %id)
FN092606 breast carcinoma .j-u 985 to 1041 1 to 57       57/60
(95 %)
1 diff
(98.4 %id)
H47460 liver and spleen .j-u 1003 to 1251 1 to 251   fully sequenced,   251/251
(100 %)
1 diff
(99.7 %id)
R41548 whole brain .j-u 1082 to 1281 199 to 1   tiling clone,   199/199
(100 %)
2 diff
(99.0 %id)
H47370 liver and spleen .j-u 1113 to 1241 129 to 1   fully sequenced,   129/129
(100 %)
0 diff
(100 %id)
DA907352   .l 1 to 553 2 to 554 exact tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
AK123362 caudate nucleus Gene COCH, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
DB304959 brain Gene COCH, variant not shown              
DA220575 brain Gene COCH, variant not shown       capped      
DB306499 caudate nucleus Gene COCH, variant not shown         Suspected internal deletion, this clone was ignored    
DA255242 caudate nucleus Gene COCH, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA337501 hippocampus Gene COCH, variant not shown       capped      
DB311595 thalamus Gene COCH, variant not shown         This clone was ignored    
DA384754 thalamus Gene COCH, variant not shown       capped This clone was ignored    
BX439038 placenta Gene COCH, variant not shown         Suspected internal deletion, this clone was ignored    
AV717153   Gene COCH, variant not shown         Suspected internal deletion, this clone was ignored    
DR033864 brain, Right frontal lobe Gene COCH, variant not shown              
AI687137 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus Gene COCH, variant not shown         Suspected internal deletion, this clone was ignored    
BQ941458 sciatic nerve Gene COCH, variant not shown              
DA764428 tongue Gene COCH, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k-u, .l Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC