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Gene CNTNAP4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
115 supporting clones for gene CNTNAP4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF463518 brain .a 1 to 4355 1 to 4355 Q789R D1158E tiling clone,   4355/4355
(100 %)
3 diff
(100.0 %id)
Z44514 brain, total brain .a 4318 to 4657 1 to 342   tiling clone,   342/342
(100 %)
3 diff
(99.2 %id)
Z40413 brain, total brain .a 5811 to 6115 305 to 1   tiling clone,   305/305
(100 %)
1 diff
(99.7 %id)
AB100092 brain .b 1 to 3782 1 to 3783 S15I T16Y Q17S N18K W19L ... tiling clone,   3783/3783
(100 %)
4 diff
(99.9 %id)
NM_138994.3   .c 1 to 4326 2 to 4327 exact RefSeq,   4327/4327
(100 %)
5 diff
(99.9 %id)
DB050637 testis .c 1 to 561 2 to 562   tiling clone, capped   561/561
(100 %)
2 diff
(99.7 %id)
DB075055 testis .c 15 to 554 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DB070824 testis .c 18 to 556 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
AB100093 brain .c 59 to 3766 1 to 3708 L219R Q713R D1082E tiling clone,   3708/3708
(100 %)
4 diff
(99.9 %id)
BM544789 brain, hippocampus .c 3295 to 4319 22 to 1055   tiling clone,   1034/1098
(94 %)
30 diff
(97.3 %id)
N95693 multiple sclerosis lesions .c 3374 to 3811 1 to 447       447/447
(100 %)
11 diff
(97.6 %id)
CR616666 fetal brain .c 3496 to 4311 1 to 816       816/816
(100 %)
0 diff
(100 %id)
BX420987 brain, fetal brain .c 3496 to 4320 1 to 825       825/825
(100 %)
1 diff
(99.9 %id)
AI954637 pooled germ cell tumors .c 3795 to 4314 520 to 1       520/520
(100 %)
2 diff
(99.7 %id)
AI803984 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 3864 to 4314 451 to 1   tiling clone,   451/451
(100 %)
0 diff
(100 %id)
AI336983 pooled germ cell tumors .c 3865 to 4314 450 to 1       450/450
(100 %)
0 diff
(100 %id)
AI352097   .c 4018 to 4321 309 to 6   tiling clone,   304/309
(98 %)
0 diff
(100 %id)
AW235923 pooled germ cell tumors .c 4094 to 4314 221 to 1       221/221
(100 %)
0 diff
(100 %id)
AW196558 pooled germ cell tumors .c 4096 to 4314 221 to 1       221/221
(100 %)
2 diff
(99.1 %id)
AB051550 brain .d 1 to 4691 1 to 4692 Q698R D1067E tiling clone, available from KIAA,   4692/4692
(100 %)
4 diff
(100.0 %id)
NM_033401.3   .d 1 to 4866 1 to 4867 exact RefSeq,   4867/4867
(100 %)
1 diff
(100.0 %id)
BP310970 brain .d 73 to 653 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA233881 brain .d 87 to 673 2 to 588   tiling clone, capped   587/587
(100 %)
3 diff
(99.5 %id)
DA409884 thalamus .d 96 to 638 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DA324449 hippocampus .d 100 to 448 2 to 351   capped   350/350
(100 %)
1 diff
(99.8 %id)
DA809416 brain .d 106 to 694 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DA106571 cerebellum .d 122 to 682 2 to 564   capped   563/564
(99 %)
4 diff
(99.3 %id)
DA096695 cerebellum .d 123 to 669 2 to 551   capped   550/550
(100 %)
3 diff
(99.5 %id)
DA320040 hippocampus .d 123 to 506 2 to 386   capped   385/385
(100 %)
1 diff
(99.8 %id)
DA525747 brain .d 123 to 682 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
DA236564 brain .d 125 to 697 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DA238973 brain .d 125 to 701 2 to 581   capped   580/580
(100 %)
3 diff
(99.5 %id)
DA336846 hippocampus .d 125 to 589 2 to 467   capped   466/466
(100 %)
1 diff
(99.8 %id)
DA322640 hippocampus .d 126 to 675 2 to 552   capped   551/551
(100 %)
5 diff
(99.1 %id)
DA330618 hippocampus .d 126 to 684 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
DA319130 hippocampus .d 127 to 448 2 to 324   capped   323/323
(100 %)
2 diff
(99.4 %id)
DA416879 thalamus .d 132 to 504 2 to 375   capped   374/374
(100 %)
1 diff
(99.8 %id)
DA103983 cerebellum .d 157 to 716 2 to 563   capped   562/562
(100 %)
3 diff
(99.5 %id)
DA226423 brain .d 168 to 706 2 to 542   capped   541/541
(100 %)
2 diff
(99.7 %id)
DA211340 brain .d 169 to 732 2 to 567   capped   566/566
(100 %)
3 diff
(99.5 %id)
DA317391 hippocampus .d 207 to 783 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA226361 brain .d 303 to 949 2 to 649   capped   648/648
(100 %)
1 diff
(99.9 %id)
DA413734 thalamus .d 306 to 841 2 to 538   capped   537/538
(99 %)
4 diff
(99.3 %id)
DA094421 cerebellum .d 312 to 861 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA317939 hippocampus .d 312 to 775 2 to 466   capped   465/471
(98 %)
2 diff
(99.6 %id)
AB100094 brain .d 386 to 4311 1 to 3927 Q698R D1067E     3927/3927
(100 %)
4 diff
(99.9 %id)
DA319383 hippocampus .d 1087 to 1527 82 to 523   capped   442/522
(84 %)
9 diff
(98.3 %id)
DA240218 brain .d 1333 to 1913 2 to 580   capped   579/579
(100 %)
5 diff
(99.2 %id)
BX508065   .d 1490 to 2161 1 to 672       672/672
(100 %)
0 diff
(100 %id)
DA126993 cerebellum .d 1619 to 2206 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA081324 cerebellum .d 1671 to 2231 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA399620 thalamus .d 1726 to 2272 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA276985 corpus callosum .d 2009 to 2562 2 to 555   capped   554/554
(100 %)
3 diff
(99.5 %id)
DA303028 hippocampus .d 2085 to 2649 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA236729 brain .d 2191 to 2773 2 to 585   capped   584/584
(100 %)
2 diff
(99.7 %id)
DA307636 hippocampus .d 2414 to 3009 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
BF920204 nervous_tumor .d 2486 to 2728 266 to 25     Submitted on the opposite strand 242/284
(85 %)
5 diff
(98.3 %id)
DA096942 cerebellum .d 2506 to 3044 2 to 540   capped   539/539
(100 %)
1 diff
(99.9 %id)
BP361741 thalamus .d 2540 to 3134 1 to 598       598/598
(100 %)
6 diff
(99.0 %id)
DA162492 amygdala .d 2621 to 3171 11 to 561   capped   551/560
(98 %)
7 diff
(98.8 %id)
DA303920 hippocampus .d 2660 to 3211 2 to 553   capped   552/552
(100 %)
2 diff
(99.7 %id)
DA227550 brain .d 2668 to 3320 2 to 655   capped   654/654
(100 %)
2 diff
(99.7 %id)
DA155873 amygdala .d 2723 to 3213 2 to 492   capped   491/491
(100 %)
2 diff
(99.6 %id)
DA077038 cerebellum .d 2780 to 3333 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DA071421 cerebellum .d 2874 to 3448 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DA339559 hippocampus .d 2938 to 3514 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DB177730 kidney, tumor tissue .d 2939 to 3485 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA798371 brain .d 2943 to 3494 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA074959 cerebellum .d 3393 to 3965 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DT217898 brain .d 3641 to 4128 12 to 499   tiling clone,   488/499
(97 %)
6 diff
(98.8 %id)
DB312545 thalamus .d 4121 to 4691 578 to 1       578/578
(100 %)
17 diff
(97.1 %id)
DB302222 amygdala .d 4331 to 4866 537 to 1   tiling clone,   537/537
(100 %)
2 diff
(99.7 %id)
AK057327 testis .e 1 to 2338 2 to 2339 exact tiling clone, available from FLJ,   2339/2339
(100 %)
1 diff
(100.0 %id)
DB021315 testis .e 1 to 559 2 to 563   capped   562/562
(100 %)
3 diff
(99.5 %id)
DB335927 testis .e 2071 to 2338 268 to 1       268/277
(96 %)
1 diff
(99.7 %id)
BG281728 melanotic melanoma, skin .f 1 to 561 1 to 565 T161R I174Y E175R V176S N177K ... tiling clone, available from MGC,   565/568
(99 %)
12 diff
(97.9 %id)
BC017266 Skin, melanotic melanoma. .f 2 to 543 1 to 542   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (19/23 A in genome downstream of last aligned base) 542/542
(100 %)
1 diff
(99.9 %id)
DW409251 Liver .g 1 to 285 17 to 301 exact tiling clone,   285/339
(84 %)
7 diff
(98.0 %id)
DA098278 cerebellum .h-u 1 to 568 2 to 569 exact tiling clone, to resequence, capped   568/568
(100 %)
2 diff
(99.7 %id)
BG000630 placenta_normal .h-u 45 to 451 1 to 407 P4A K32T I34T Q88R tiling clone,   407/407
(100 %)
7 diff
(98.3 %id)
DA216646 brain .h-u 1228 to 1776 2 to 550   tiling clone, capped   549/549
(100 %)
10 diff
(98.2 %id)
DA328924 hippocampus .h-u 1292 to 1843 2 to 553   tiling clone, capped   552/552
(100 %)
11 diff
(98.1 %id)
AK054786 cerebellum .h-u 2531 to 4386 1 to 1856   tiling clone, available from FLJ,   1856/1856
(100 %)
3 diff
(99.9 %id)
DA055735 cerebellum .h-u 2532 to 3088 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DB473443 hippocampus .h-u 2650 to 3132 1 to 483       483/483
(100 %)
2 diff
(99.6 %id)
DT216705 brain .h-u 2870 to 3413 1 to 545       545/545
(100 %)
2 diff
(99.7 %id)
AV728644 hypothalamus .h-u 3023 to 3722 1 to 698       698/700
(99 %)
18 diff
(97.5 %id)
DB180191 kidney, tumor tissue .h-u 3254 to 3813 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
BX113873   .h-u 3336 to 3822 1 to 487       487/487
(100 %)
0 diff
(100 %id)
N48926 multiple sclerosis lesions .h-u 3520 to 3782 1 to 267       267/350
(76 %)
9 diff
(97.5 %id)
CK024072 brain/CNS, Human Brain - Frontal Cortex .h-u 3581 to 4221 1 to 641   tiling clone,   641/643
(99 %)
3 diff
(99.6 %id)
DB298902 cerebellum .h-u 3821 to 4393 574 to 1   tiling clone, to resequence,   574/574
(100 %)
3 diff
(99.5 %id)
DB304749 brain .h-u 3854 to 4386 533 to 1   tiling clone,   533/533
(100 %)
1 diff
(99.9 %id)
DB296559 cerebellum .h-u 3855 to 4386 533 to 1       533/533
(100 %)
2 diff
(99.7 %id)
DT218031 brain .i-u 1 to 536 1 to 536   tiling clone,   536/536
(100 %)
18 diff
(96.7 %id)
DA322766 hippocampus .i-u 43 to 598 2 to 559   tiling clone, capped   558/559
(99 %)
12 diff
(97.9 %id)
DA106099 cerebellum .i-u 364 to 900 2 to 539 C21L P22S W23M N24E L25F ... tiling clone, capped   538/538
(100 %)
30 diff
(94.5 %id)
DA333262 hippocampus .i-u 787 to 1367 2 to 582   tiling clone, capped   581/581
(100 %)
0 diff
(100 %id)
DA315000 hippocampus .i-u 794 to 1326 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA213651 brain .i-u 800 to 1319 2 to 522   capped   521/521
(100 %)
1 diff
(99.9 %id)
DA338462 hippocampus .i-u 898 to 1470 2 to 573   capped   572/572
(100 %)
4 diff
(99.4 %id)
DA245942 brain .i-u 995 to 1568 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA312649 hippocampus .i-u 1149 to 1710 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA096446 cerebellum .i-u 1290 to 1829 2 to 543   capped   542/546
(99 %)
3 diff
(99.5 %id)
DA275767 corpus callosum .i-u 1317 to 1880 2 to 565   tiling clone, capped   564/564
(100 %)
0 diff
(100 %id)
DA192725 amygdala .i-u 1680 to 2288 2 to 610   tiling clone, capped   609/609
(100 %)
0 diff
(100 %id)
DA275127 corpus callosum .i-u 2244 to 2800 2 to 558   tiling clone, capped   557/557
(100 %)
0 diff
(100 %id)
DB166966 kidney, tumor tissue .i-u 2676 to 3242 2 to 568   tiling clone, capped   567/567
(100 %)
1 diff
(99.9 %id)
DA172587 amygdala .i-u 2700 to 3267 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
TI_57215022   .i-u 2719 to 3500 65 to 847       783/847
(92 %)
6 diff
(99.3 %id)
BI752001 brain .i-u 2720 to 3500 1 to 782   tiling clone,   782/782
(100 %)
5 diff
(99.4 %id)
DA118382 cerebellum .i-u 2884 to 3438 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA065446 cerebellum .i-u 2940 to 3514 2 to 578   capped   577/577
(100 %)
5 diff
(99.2 %id)
DA356363 subthalamic nucleus .i-u 3017 to 3584 2 to 569   tiling clone, capped   568/568
(100 %)
2 diff
(99.7 %id)
AK057218 testis .j 1 to 2197 2 to 2198 exact tiling clone, available from FLJ,   2198/2198
(100 %)
0 diff
(100 %id)
DB019544 testis .j 1 to 816 2 to 814   capped   813/813
(100 %)
6 diff
(99.3 %id)
DB335582 testis .j 1664 to 2197 530 to 1       530/531
(99 %)
13 diff
(97.6 %id)
DB542217 hippocampus .k-u 1 to 476 1 to 476 exact tiling clone, Submitted on the opposite strand 476/476
(100 %)
2 diff
(99.6 %id)
AI190672 heart .k-u 113 to 476 364 to 1 exact     364/364
(100 %)
2 diff
(99.5 %id)
AW898319 nervous_normal .l-u 1 to 175 24 to 197 H4M V5* tiling clone,   174/197
(88 %)
6 diff
(97.0 %id)
DB308576 hippocampus Gene CNTNAP4, variant not shown         This clone was ignored    
DA312791 hippocampus Gene CNTNAP4, variant not shown       capped This clone was ignored    
DA315890 hippocampus Gene CNTNAP4, variant not shown       capped Suspected internal deletion, this clone was ignored    
N64495 multiple sclerosis lesions Gene CNTNAP4, variant not shown         This clone was ignored    
N92229 multiple sclerosis lesions Gene CNTNAP4, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i-u, .j, .k-u, .l-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI