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Gene CNTNAP1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
151 supporting clones for gene CNTNAP1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
U17976 Fibroblast, liver cell line .a 1 to 490 1 to 491       491/491
(100 %)
7 diff
(98.6 %id)
U87223 neuroblastoma .a 1 to 5276 1 to 5275 exact tiling clone, AAA   5275/5275
(100 %)
3 diff
(100.0 %id)
NM_003632.2   .a 2 to 5454 1 to 5453 exact RefSeq, AAA   5453/5453
(100 %)
0 diff
(100 %id)
CD617292   .a 42 to 234 85 to 277       193/199
(96 %)
6 diff
(97.0 %id)
CD617293   .a 42 to 234 192 to 1       192/196
(97 %)
1 diff
(99.5 %id)
TI_2194695889   .a 87 to 1120 86 to 1117       1032/1241
(83 %)
15 diff
(98.8 %id)
TI_2194697556   .a 87 to 933 283 to 1126     Submitted on the opposite strand 842/1260
(66 %)
13 diff
(99.0 %id)
TI_2194698547   .a 87 to 933 282 to 1122     Submitted on the opposite strand 841/1276
(65 %)
20 diff
(98.5 %id)
TI_2194699139   .a 87 to 1149 83 to 1138       1056/1278
(82 %)
14 diff
(99.0 %id)
TI_2194696898   .a 88 to 1224 1134 to 8   tiling clone,   1127/1264
(89 %)
12 diff
(99.1 %id)
DN999641   .a 99 to 583 1 to 485       485/485
(100 %)
4 diff
(99.2 %id)
CN409583 embryonic stem cells, cell lines H1, H7, andH9 .a 104 to 781 1 to 678       678/678
(100 %)
2 diff
(99.8 %id)
AA774742 schizophrenic brain S-11 frontal lobe .a 114 to 521 1 to 397     Submitted on the opposite strand 397/400
(99 %)
15 diff
(96.3 %id)
T27170   .a 581 to 1117 1 to 537       537/537
(100 %)
8 diff
(98.6 %id)
TI_2194696931   .a 606 to 1754 13 to 1154       1142/1301
(87 %)
19 diff
(98.6 %id)
U18000 Fibroblast, liver cell line .a 733 to 1463 768 to 54       715/768
(93 %)
66 diff
(91.5 %id)
TI_2194696902   .a 779 to 1943 1159 to 4       1156/1273
(90 %)
19 diff
(98.6 %id)
TI_2194698537   .a 1141 to 2216 1071 to 1       1071/1282
(83 %)
9 diff
(99.3 %id)
CD617290   .a 1468 to 2160 8 to 698       691/698
(98 %)
11 diff
(98.5 %id)
U17905 Fibroblast, liver cell line .a 1592 to 2045 1 to 447       447/451
(99 %)
21 diff
(95.4 %id)
BE713618 head_neck .a 1629 to 2063 7 to 440       434/440
(98 %)
6 diff
(98.7 %id)
BE713251 head_neck .a 1632 to 2059 1 to 428       428/428
(100 %)
7 diff
(98.4 %id)
BX442576 brain, fetal brain .a 1678 to 2677 1 to 994       994/1040
(95 %)
16 diff
(98.5 %id)
CD617291   .a 1972 to 2562 591 to 1       591/591
(100 %)
0 diff
(100 %id)
BG009117 placenta_normal .a 2108 to 2493 386 to 1       386/395
(97 %)
1 diff
(99.8 %id)
DB484156 hypothalamus .a 2135 to 2337 1 to 203       203/203
(100 %)
0 diff
(100 %id)
CD617294   .a 2156 to 2663 1 to 525       525/525
(100 %)
20 diff
(96.2 %id)
CD617296   .a 2156 to 2684 1 to 534       534/534
(100 %)
9 diff
(98.4 %id)
CD617298   .a 2156 to 2686 1 to 531       531/531
(100 %)
0 diff
(100 %id)
CD617300   .a 2156 to 2738 1 to 585       585/585
(100 %)
10 diff
(98.3 %id)
BM551800 astrocytoma grade IV, cell line, brain .a 2214 to 3216 1 to 1005       1005/1054
(95 %)
22 diff
(98.0 %id)
BM914236 astrocytoma grade IV, cell line, brain .a 2215 to 2747 1 to 533       533/1212
(43 %)
10 diff
(99.2 %id)
BU170662 eye, retinoblastoma .a 2265 to 3118 1 to 856       856/857
(99 %)
6 diff
(99.3 %id)
CN409582 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2306 to 2882 1 to 577       577/577
(100 %)
1 diff
(99.9 %id)
BX452235 brain, fetal brain .a 2502 to 3212 1 to 708       708/923
(76 %)
14 diff
(98.5 %id)
BI870193 adenocarcinoma, cell line, Liver .a 2562 to 3425 2 to 865       864/865
(99 %)
18 diff
(98.0 %id)
TI_57231152   .a 2562 to 3425 93 to 956       864/865
(99 %)
18 diff
(98.0 %id)
TI_2194696915   .a 2684 to 3790 11 to 1111       1101/1261
(87 %)
15 diff
(98.9 %id)
CN409584 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2715 to 3377 1 to 663       663/663
(100 %)
4 diff
(99.4 %id)
CN409586 embryonic stem cells, cell lines H1, H7, andH9 .a 2715 to 3454 1 to 738       738/738
(100 %)
4 diff
(99.5 %id)
TI_2194696932   .a 2760 to 3939 1177 to 13       1165/1246
(93 %)
16 diff
(98.8 %id)
BI758272 brain .a 2781 to 3573 1 to 795       795/914
(86 %)
20 diff
(97.9 %id)
TI_57220865   .a 2781 to 3573 62 to 856       795/975
(81 %)
26 diff
(97.4 %id)
BQ723531 sympathetic trunk .a 2837 to 3692 1 to 857       857/926
(92 %)
16 diff
(98.3 %id)
BF952984 nervous_normal .a 2848 to 3387 1 to 545       545/545
(100 %)
24 diff
(95.6 %id)
BG007412 placenta_normal .a 3028 to 3636 1 to 609       609/609
(100 %)
4 diff
(99.4 %id)
TI_2194696912   .a 3060 to 4167 13 to 1111       1099/1233
(89 %)
17 diff
(98.7 %id)
BF947325 nervous_normal .a 3265 to 3445 7 to 179       173/202
(85 %)
10 diff
(95.1 %id)
TI_2194696914   .a 3268 to 4454 1169 to 1       1169/1239
(94 %)
66 diff
(94.7 %id)
CN409585 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 3292 to 3932 11 to 650       640/655
(97 %)
7 diff
(99.0 %id)
U18017 Fibroblast, liver cell line .a 3310 to 4235 1 to 920       920/920
(100 %)
10 diff
(99.0 %id)
CD617297   .a 3322 to 4132 826 to 15       812/829
(97 %)
17 diff
(98.0 %id)
CD617295   .a 3403 to 4132 744 to 15       730/744
(98 %)
5 diff
(99.4 %id)
BP323389 Pancreas .a 3422 to 4007 1 to 586       586/586
(100 %)
0 diff
(100 %id)
BM719221 eye, fetal eye .a 3464 to 4174 1 to 711       711/711
(100 %)
3 diff
(99.6 %id)
CD617299   .a 3475 to 4132 672 to 15       658/672
(97 %)
3 diff
(99.6 %id)
CD617301   .a 3496 to 4132 654 to 10       645/655
(98 %)
8 diff
(98.8 %id)
TI_2194699517   .a 3497 to 4609 1204 to 104       1101/1277
(86 %)
18 diff
(98.6 %id)
TI_2194696911   .a 3563 to 4602 28 to 1067       1040/1277
(81 %)
14 diff
(99.0 %id)
BE933687 head_neck .a 3658 to 4008 357 to 7       351/357
(98 %)
0 diff
(100 %id)
BE934052 head_neck .a 3658 to 4005 349 to 1       349/349
(100 %)
2 diff
(99.5 %id)
BE933630 head_neck .a 3663 to 4007 1 to 344       344/344
(100 %)
4 diff
(98.9 %id)
BE933863 head_neck .a 3663 to 4007 1 to 344       344/344
(100 %)
4 diff
(98.9 %id)
DB477097 hippocampus .a 3669 to 4170 1 to 502       502/502
(100 %)
1 diff
(99.9 %id)
BF525615 brain, glioblastoma with EGFR amplification .a 3672 to 3948 1 to 286       286/341
(83 %)
15 diff
(95.7 %id)
BI197344 brain, neuroblastoma .a 3672 to 4289 1 to 619       619/639
(96 %)
8 diff
(98.8 %id)
BE933659 head_neck .a 3673 to 4007 1 to 336       336/336
(100 %)
2 diff
(99.5 %id)
BQ326969 colon_normal .a 3732 to 4164 1 to 435       435/435
(100 %)
16 diff
(96.4 %id)
BX411339 brain, fetal brain .a 3785 to 4380 589 to 1       589/773
(76 %)
22 diff
(97.2 %id)
T27223   .a 3785 to 4031 1 to 249       249/249
(100 %)
20 diff
(92.0 %id)
BG005739 placenta_normal .a 3788 to 4233 453 to 8       446/454
(98 %)
4 diff
(99.2 %id)
BY798563 eye .a 3934 to 4557 1 to 624       624/624
(100 %)
0 diff
(100 %id)
TI_2194696934   .a 4062 to 4609 1 to 549       549/1280
(42 %)
6 diff
(99.6 %id)
BX442575 brain, fetal brain .a 4120 to 5249 1113 to 1       1113/1148
(96 %)
28 diff
(97.6 %id)
BG912953 anaplastic oligodendroglioma with 1p/19qloss, brain .a 4138 to 4336 1 to 197       197/209
(94 %)
18 diff
(91.4 %id)
BQ926359 sciatic nerve .a 4172 to 4792 1 to 620       620/627
(98 %)
3 diff
(99.6 %id)
BM462474 leiomyosarcoma, uterus .a 4182 to 4794 84 to 697       614/1218
(50 %)
3 diff
(99.8 %id)
BG896529 cartilage .a 4292 to 4582 70 to 361       292/298
(97 %)
6 diff
(98.0 %id)
BG896530 cartilage .a 4292 to 4606 76 to 391       316/322
(98 %)
6 diff
(98.2 %id)
CB049454 Prostate .a 4299 to 4774 3 to 478   fully sequenced,   476/478
(99 %)
5 diff
(99.0 %id)
BF528227 anaplastic oligodendroglioma with 1p/19qloss, brain .a 4314 to 4973 1 to 651       651/866
(75 %)
21 diff
(97.6 %id)
H19059 brain .a 4401 to 4815 1 to 418       418/418
(100 %)
5 diff
(98.9 %id)
BX116783 brain .a 4402 to 4762 1 to 362       362/364
(99 %)
5 diff
(98.7 %id)
TI_149291437   .a 4431 to 5218 865 to 84       782/992
(78 %)
0 diff
(100 %id)
BI870439 adenocarcinoma, cell line, Liver .a 4432 to 5140 1 to 709       709/710
(99 %)
7 diff
(99.1 %id)
TI_57230917   .a 4432 to 5140 57 to 765       709/710
(99 %)
7 diff
(99.1 %id)
BM544389 brain, hippocampus .a 4490 to 4798 20 to 329       310/353
(87 %)
5 diff
(98.6 %id)
BM708066 eye, RPE and Choroid .a 4552 to 4782 1 to 231       231/232
(99 %)
1 diff
(99.6 %id)
BM973971 lung .a 4553 to 5218 685 to 21       665/685
(97 %)
0 diff
(100 %id)
BF945164 nervous_normal .a 4558 to 4688 1 to 130       130/140
(92 %)
7 diff
(95.0 %id)
D60067   .a 4558 to 5022 1 to 465       465/465
(100 %)
0 diff
(100 %id)
BM671288 eye, optic nerve .a 4615 to 5276 680 to 19   AAA   662/662
(100 %)
1 diff
(99.9 %id)
BM689422 eye, Retina Foveal and Macular .a 4656 to 4796 9 to 149       141/149
(94 %)
6 diff
(96.0 %id)
W79859 heart .a 4661 to 4981 1 to 325   fully sequenced,   325/325
(100 %)
5 diff
(98.5 %id)
BU632710 cell lines, Chondrosarcoma .a 4733 to 5276 562 to 19   AAA   544/544
(100 %)
0 diff
(100 %id)
CB049453 Prostate .a 4744 to 5276 561 to 29   fully sequenced, AAA   533/533
(100 %)
6 diff
(98.9 %id)
CK299781 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4769 to 5276 526 to 19   AAA   508/514
(98 %)
0 diff
(100 %id)
TI_151732030   .a 4769 to 5276 588 to 81   AAA   508/927
(54 %)
0 diff
(100 %id)
AI458127 pooled .a 4795 to 5276 488 to 7       482/488
(98 %)
0 diff
(100 %id)
AW134820   .a 4809 to 5276 484 to 18   AAA   467/467
(100 %)
5 diff
(99.0 %id)
BM683170 eye, fetal eye .a 4809 to 5453 666 to 21       646/666
(96 %)
0 diff
(100 %id)
BU626366 Bone, Subchondral Bone .a 4811 to 5276 485 to 19   AAA   467/467
(100 %)
3 diff
(99.4 %id)
AI126334   .a 4812 to 5276 476 to 12   AAA   465/465
(100 %)
0 diff
(100 %id)
CA428589 cell lines, Chondrosarcoma .a 4812 to 5276 481 to 19   AAA   463/468
(98 %)
5 diff
(99.0 %id)
W74520 heart .a 4825 to 5276 469 to 18   AAA   452/452
(100 %)
6 diff
(98.7 %id)
BQ447517 Knee, Osteoarthritic Cartilage .a 4831 to 5276 463 to 19   AAA   445/445
(100 %)
2 diff
(99.6 %id)
BU726587 eye, Retina Foveal and Macular .a 4834 to 5276 461 to 19   AAA   443/443
(100 %)
0 diff
(100 %id)
AI149166 placenta .a 4867 to 5275 409 to 1       409/409
(100 %)
0 diff
(100 %id)
BU729460 eye, human retina .a 4867 to 5454 606 to 19   tiling clone, AAA   588/588
(100 %)
0 diff
(100 %id)
AW612828 carcinoid, lung .a 4890 to 5276 392 to 4       389/396
(98 %)
0 diff
(100 %id)
BU731459 eye, RPE and Choroid .a 4912 to 5454 561 to 19   AAA   543/543
(100 %)
2 diff
(99.7 %id)
AI702779 carcinoid, lung .a 4936 to 5276 342 to 4       339/342
(99 %)
0 diff
(100 %id)
AA621660   .a 4945 to 5126 181 to 1       181/181
(100 %)
5 diff
(97.3 %id)
W74519 heart .a 4951 to 5276 342 to 18   fully sequenced, AAA   325/325
(100 %)
5 diff
(98.5 %id)
AW241716 pooled .a 4954 to 5276 338 to 16   AAA   323/323
(100 %)
1 diff
(99.7 %id)
DB567015 hypothalamus .a 4984 to 5451 1 to 468     Submitted on the opposite strand 468/468
(100 %)
5 diff
(99.0 %id)
AW952368   .a 4995 to 5276 1 to 282   AAA   282/282
(100 %)
0 diff
(100 %id)
AI313414 lung .a 5002 to 5449 448 to 1       448/448
(100 %)
0 diff
(100 %id)
DB545764 hippocampus .a 5012 to 5450 1 to 439     Submitted on the opposite strand 439/439
(100 %)
1 diff
(99.8 %id)
H18963 brain .a 5016 to 5450 445 to 1       445/454
(98 %)
23 diff
(95.0 %id)
DB556553 hypothalamus .a 5018 to 5451 1 to 435     Submitted on the opposite strand 435/435
(100 %)
4 diff
(99.1 %id)
AA325604 brain, cerebellum .a 5031 to 5276 1 to 246       246/246
(100 %)
0 diff
(100 %id)
AI809343 pooled .a 5044 to 5400 421 to 61   AAA   361/408
(88 %)
0 diff
(100 %id)
DB559884 hypothalamus .a 5048 to 5451 1 to 404     Submitted on the opposite strand 404/404
(100 %)
2 diff
(99.6 %id)
AA028905 uterus .a 5055 to 5276 224 to 4       221/225
(98 %)
0 diff
(100 %id)
AI085318 anaplastic oligodendroglioma, brain .a 5061 to 5451 391 to 1       391/391
(100 %)
0 diff
(100 %id)
AA927327 pooled .a 5098 to 5276 196 to 17   AAA   180/180
(100 %)
1 diff
(99.5 %id)
DB560166 hypothalamus .a 5140 to 5451 1 to 316     Submitted on the opposite strand 316/316
(100 %)
15 diff
(95.3 %id)
BF514176   .a 5176 to 5448 1 to 273     Submitted on the opposite strand 273/311
(87 %)
6 diff
(98.1 %id)
BQ187801 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 5226 to 5448 246 to 24   AAA Submitted on the opposite strand 223/226
(98 %)
9 diff
(96.1 %id)
BQ185456 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 5235 to 5448 1 to 213   AAA Submitted on the opposite strand 213/213
(100 %)
5 diff
(97.7 %id)
BC171797 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .b 1 to 4499 1 to 4500 exact tiling clone,   4500/4500
(100 %)
3 diff
(100.0 %id)
TI_2194698534   .b 1256 to 2362 14 to 1111       1098/1261
(87 %)
13 diff
(99.0 %id)
TI_2194698536   .b 1408 to 2513 1 to 1103       1103/1283
(85 %)
9 diff
(99.3 %id)
TI_2194696904   .b 1680 to 2811 1144 to 15       1130/1277
(88 %)
8 diff
(99.4 %id)
TI_2194698532   .b 1832 to 2955 12 to 1126       1115/1272
(87 %)
28 diff
(97.8 %id)
TI_2194696933   .b 1975 to 3110 1153 to 24   tiling clone,   1132/1249
(90 %)
16 diff
(98.8 %id)
TI_2194696916   .b 1980 to 3119 1 to 1132   tiling clone,   1132/1245
(90 %)
20 diff
(98.4 %id)
CO247738 Chondrosarcoma Lung Metastasis cell lines, lung .c 1 to 665 1 to 660 G2E T3A R207K V209* tiling clone,   660/786
(83 %)
12 diff
(98.5 %id)
AL706048 human skeletal muscle .d 1 to 613 613 to 1 exact tiling clone, Submitted on the opposite strand 613/613
(100 %)
0 diff
(100 %id)
CA390240 eye, RPE/choroid .d 229 to 613 191 to 573       385/573
(67 %)
6 diff
(99.0 %id)
BF527414 anaplastic oligodendroglioma with 1p/19qloss, brain .e 1 to 767 762 to 1   tiling clone, Submitted on the opposite strand 762/926
(82 %)
23 diff
(97.6 %id)
BQ718897 sympathetic trunk .e 53 to 890 1 to 846 R53P L54S D56G G57R L58A ... tiling clone,   846/847
(99 %)
15 diff
(98.3 %id)
BG988815 head_neck .e 189 to 750 7 to 574       568/574
(98 %)
6 diff
(99.0 %id)
DA515757 brain .f-u 1 to 490 2 to 492 exact tiling clone, capped   491/491
(100 %)
2 diff
(99.6 %id)
TI_2194697541   Gene CNTNAP1, variant not shown         Submitted on the opposite strand    
CN409587 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells Gene CNTNAP1, variant not shown         This clone was ignored    
DB487213 hypothalamus Gene CNTNAP1, variant not shown         This clone was ignored    
DB490118 hypothalamus Gene CNTNAP1, variant not shown         This clone was ignored    
DB490235 hypothalamus Gene CNTNAP1, variant not shown         This clone was ignored    
DB496008 hypothalamus Gene CNTNAP1, variant not shown         This clone was ignored    
BI603306 brain, hypothalamus Gene CNTNAP1, variant not shown         This clone was ignored    
BI604159 brain, hypothalamus Gene CNTNAP1, variant not shown         This clone was ignored    
BI600314 brain, hypothalamus Gene CNTNAP1, variant not shown         This clone was ignored    
TI_45210741   Gene CNTNAP1, variant not shown         This clone was ignored    
TI_45213595   Gene CNTNAP1, variant not shown         This clone was ignored    
TI_45215304   Gene CNTNAP1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI