To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene CNTN5TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
83 supporting clones for gene CNTN5 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC144186 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a -8 to 3858 74 to 3939 G376E tiling clone,   3866/3939
(98 %)
7 diff
(99.9 %id)
NM_014361.2   .a -8 to 4034 123 to 4164 exact RefSeq,   4042/4164
(97 %)
6 diff
(99.9 %id)
BC130619 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 132 to 3858 74 to 3800 S1079T     3727/3800
(98 %)
8 diff
(99.8 %id)
BC144185 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 132 to 3858 74 to 3800 I530V     3727/3800
(98 %)
8 diff
(99.8 %id)
AB013802   .a 134 to 4034 4 to 3904 exact tiling clone,   3901/3904
(99 %)
6 diff
(99.9 %id)
NM_175566.1   .b -8 to 3812 123 to 3942 exact RefSeq,   3820/3942
(96 %)
6 diff
(99.9 %id)
AB013803   .b 134 to 3812 4 to 3682 exact tiling clone,   3679/3682
(99 %)
6 diff
(99.9 %id)
TI_2194644048   .b 1381 to 2613 1 to 1210       1210/1258
(96 %)
38 diff
(97.0 %id)
CN305624 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 1414 to 2107 12 to 704       693/704
(98 %)
6 diff
(99.2 %id)
TI_1607546003   .b 1417 to 2524 38 to 1131       1094/1225
(89 %)
22 diff
(98.3 %id)
TI_2194644055   .b 1559 to 2569 179 to 1172       994/1273
(78 %)
31 diff
(97.6 %id)
TI_2194644071   .b 2053 to 3287 7 to 1223       1219/1271
(95 %)
42 diff
(96.7 %id)
TI_1607546005   .b 2055 to 3145 8 to 1089       1082/1216
(88 %)
23 diff
(98.2 %id)
CN305623 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 2117 to 2751 1 to 634       634/634
(100 %)
3 diff
(99.6 %id)
DA179785 amygdala .b 2333 to 2863 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
TI_1607546009   .b 2351 to 3474 6 to 1122       1117/1214
(92 %)
26 diff
(97.9 %id)
TI_2194644068   .b 2367 to 3637 20 to 1254       1194/1265
(94 %)
47 diff
(96.3 %id)
TI_2194644067   .b 2371 to 3538 29 to 1188       1160/1277
(90 %)
32 diff
(97.5 %id)
TI_2194645379   .b 2542 to 3642 1140 to 48     Submitted on the opposite strand 1093/1279
(85 %)
7 diff
(99.5 %id)
DA326203 hippocampus .b 2599 to 3146 2 to 550   capped   549/549
(100 %)
6 diff
(99.0 %id)
TI_2194643779   .b 2606 to 3637 1166 to 139       1028/1278
(80 %)
12 diff
(99.1 %id)
TI_2194643784   .b 2606 to 3637 1165 to 136       1033/1282
(80 %)
10 diff
(99.3 %id)
TI_2194643769   .b 2721 to 3642 1185 to 253       933/1305
(71 %)
27 diff
(98.0 %id)
TI_2194643130   .b 2731 to 3637 973 to 69       905/1231
(73 %)
2 diff
(99.9 %id)
TI_2194643772   .b 2747 to 3642 1133 to 247   AAA   887/1235
(71 %)
16 diff
(98.8 %id)
TI_2194643125   .b 2892 to 3642 803 to 53     Submitted on the opposite strand 751/803
(93 %)
2 diff
(99.8 %id)
TI_2194644064   .b 2941 to 3646 11 to 716       706/1238
(57 %)
11 diff
(99.2 %id)
TI_2194644070   .b 2947 to 3642 16 to 711       696/1280
(54 %)
11 diff
(99.2 %id)
TI_1607546007   .b 2947 to 3636 16 to 705       690/1221
(56 %)
10 diff
(99.2 %id)
H17378 whole brain .b 3768 to 4288 1 to 533   tiling clone,   533/533
(100 %)
19 diff
(96.5 %id)
R25901 placenta .b 4185 to 4403 1 to 221       221/225
(98 %)
3 diff
(98.7 %id)
R62332 placenta .b 4185 to 4569 1 to 391   tiling clone,   391/472
(82 %)
10 diff
(97.9 %id)
BX090703 placenta .b 4186 to 4990 1 to 804   tiling clone,   804/804
(100 %)
3 diff
(99.7 %id)
AA452362   .b 4414 to 4955 1 to 541       541/541
(100 %)
5 diff
(99.1 %id)
BM697855 eye, fetal eyes .b 5051 to 5413 1 to 363   tiling clone, fully sequenced,   363/363
(100 %)
0 diff
(100 %id)
BU737133 eye, fetal eyes .b 5383 to 5954 589 to 19   tiling clone, fully sequenced, AAA   571/571
(100 %)
1 diff
(99.9 %id)
H18072 whole brain .b 5492 to 5955 482 to 14   AAA   469/471
(99 %)
11 diff
(97.7 %id)
R26700 placenta .b 5593 to 5955 373 to 1   tiling clone,   373/377
(98 %)
16 diff
(95.8 %id)
R62333 placenta .b 5652 to 5955 306 to 1       306/306
(100 %)
4 diff
(98.7 %id)
BC039255 Brain, hippocampus .c 1 to 4031 270 to 4300 S223* tiling clone, available from MGC, AAA   4037/4300
(93 %)
7 diff
(99.9 %id)
DB536440 hippocampus .c 3593 to 4031 1 to 438   AAA Submitted on the opposite strand 438/438
(100 %)
26 diff
(94.1 %id)
H09656 whole brain .d -19450 to -19039 433 to 11   AAA   423/427
(99 %)
11 diff
(97.5 %id)
AK308788 amygdala .d 1 to 3143 2 to 3144 K594E tiling clone,   3144/3144
(100 %)
6 diff
(99.9 %id)
DA195873 amygdala .d 1 to 562 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA414389 thalamus .d 39 to 434 2 to 397   capped   396/562
(70 %)
1 diff
(99.9 %id)
DR001195 fetal brain .d 64 to 899 1 to 837       837/837
(100 %)
5 diff
(99.5 %id)
BM023601 Islets of Langerhans, Pancreas .d 109 to 689 1 to 582       582/582
(100 %)
5 diff
(99.2 %id)
TI_44171084   .d 162 to 558 89 to 485       397/858
(46 %)
12 diff
(98.7 %id)
TI_2194643126   .d 286 to 1350 122 to 1178       1057/1245
(84 %)
17 diff
(98.7 %id)
TI_2194643777   .d 286 to 1073 315 to 1099     Submitted on the opposite strand 785/1264
(62 %)
9 diff
(99.3 %id)
TI_2194645381   .d 286 to 1350 120 to 1172       1053/1290
(81 %)
24 diff
(98.2 %id)
TI_2194643129   .d 426 to 1482 135 to 1178     Submitted on the opposite strand 1044/1287
(81 %)
20 diff
(98.5 %id)
TI_2194643766   .d 426 to 1386 205 to 1157     Submitted on the opposite strand 953/1270
(75 %)
16 diff
(98.8 %id)
TI_2194643775   .d 426 to 1382 205 to 1156     Submitted on the opposite strand 952/1295
(73 %)
16 diff
(98.8 %id)
TI_2194645758   .d 426 to 1386 139 to 1095     Submitted on the opposite strand 957/1278
(74 %)
12 diff
(99.1 %id)
TI_1607544825   .d 426 to 1388 135 to 1094     Submitted on the opposite strand 960/1274
(75 %)
13 diff
(99.0 %id)
TI_1607545593   .d 426 to 1382 208 to 1165   AAA Submitted on the opposite strand 958/1301
(73 %)
18 diff
(98.7 %id)
TI_1607545599   .d 426 to 1388 203 to 1160     Submitted on the opposite strand 958/1279
(74 %)
19 diff
(98.6 %id)
BI551494 brain, hippocampus .d 551 to 922 392 to 770       379/772
(49 %)
23 diff
(97.1 %id)
BE788919 large cell carcinoma, lung .d 779 to 1388 7 to 617       611/966
(63 %)
9 diff
(99.1 %id)
TI_2194644051   .d 864 to 1987 1 to 1114       1114/1266
(87 %)
26 diff
(98.0 %id)
TI_2194644056   .d 904 to 2017 44 to 1154       1111/1270
(87 %)
20 diff
(98.5 %id)
TI_1607546017   .d 904 to 1973 45 to 1108   tiling clone,   1066/1243
(85 %)
26 diff
(98.0 %id)
TI_2194644046   .d 1380 to 2088 18 to 726       709/1244
(56 %)
10 diff
(99.2 %id)
TI_2194644052   .d 1380 to 2088 19 to 727       709/1280
(55 %)
10 diff
(99.3 %id)
TI_1607546013   .d 1380 to 2503 22 to 1141   tiling clone,   1120/1250
(89 %)
15 diff
(98.8 %id)
BX111689 whole brain .d 1388 to 1902 1 to 514       514/514
(100 %)
1 diff
(99.9 %id)
H09697 whole brain .d 1389 to 1802 1 to 424       424/435
(97 %)
11 diff
(97.5 %id)
DA157740 amygdala .d 1709 to 2297 2 to 590   capped   589/589
(100 %)
2 diff
(99.7 %id)
DA178936 amygdala .e 1 to 576 2 to 578   tiling clone, capped   577/577
(100 %)
1 diff
(99.9 %id)
AK294692 brain .e 416 to 2035 1 to 1620 exact tiling clone,   1620/1620
(100 %)
0 diff
(100 %id)
DC320416 brain .e 416 to 983 1 to 569       569/569
(100 %)
1 diff
(99.9 %id)
CB149307 Liver .f 1 to 977 1 to 643 R23N R24T H25L E26K L27R ... tiling clone, Suspected internal deletion 643/643
(100 %)
2 diff
(99.7 %id)
BG212311   .g 1 to 480 6 to 484 exact tiling clone, AAA   484/484
(100 %)
4 diff
(99.2 %id)
BG214985   .g 1 to 474 4 to 476 K106E     476/496
(95 %)
5 diff
(99.0 %id)
DA396172 thalamus .h 1 to 571 2 to 572 exact tiling clone, to resequence, capped   571/571
(100 %)
0 diff
(100 %id)
DB311949 thalamus .h 1261 to 1799 539 to 1   tiling clone, to resequence,   539/539
(100 %)
1 diff
(99.9 %id)
BI964771 Islets of Langerhans, Pancreas .i-u 1 to 496 1 to 496   tiling clone,   496/496
(100 %)
3 diff
(99.4 %id)
CK903418 Islets of Langerhans, Pancreas .i-u 1 to 597 1 to 597 H37Q T38P tiling clone,   597/597
(100 %)
3 diff
(99.5 %id)
CK903417 Islets of Langerhans, Pancreas .i-u 578 to 1171 610 to 17   tiling clone, AAA   594/594
(100 %)
0 diff
(100 %id)
DA328796 hippocampus .j 1 to 552 2 to 553 exact tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
BI549815 brain, hippocampus .j 62 to 862 1 to 804 exact tiling clone,   804/987
(81 %)
25 diff
(97.5 %id)
TI_44171284   .j 67 to 862 94 to 892 exact     799/1075
(74 %)
25 diff
(97.7 %id)
BQ017264 lung, Metastatic Chondrosarcoma .k-u 1 to 539 557 to 19 exact tiling clone, AAA   539/539
(100 %)
1 diff
(99.9 %id)
BM023296 Islets of Langerhans, Pancreas .l-u 1 to 485 496 to 12 exact tiling clone,   485/496
(97 %)
0 diff
(100 %id)
BG193184   .m 1 to 246 1 to 246 exact tiling clone,   246/248
(99 %)
1 diff
(99.6 %id)
TI_2194644063   Gene CNTN5, variant not shown         Suspected internal deletion, this clone was ignored    
TI_2194645760   Gene CNTN5, variant not shown         Suspected internal deletion, this clone was ignored    
TI_1607544819   Gene CNTN5, variant not shown         Submitted on the opposite strand    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j, .k-u, .l-u, .m Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC