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Gene CNTN4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
102 supporting clones for gene CNTN4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AY090737   .a 1 to 4958 78 to 5035 exact tiling clone,   4964/5035
(98 %)
11 diff
(99.8 %id)
NM_175607.1   .a 1 to 4966 78 to 5043 exact RefSeq,   4972/5043
(98 %)
6 diff
(99.9 %id)
AF549455   .a 55 to 3360 293 to 3598 exact tiling clone, AAA   3306/3598
(91 %)
6 diff
(99.9 %id)
DA137569 alzheimer cortex .a 460 to 1025 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
BC013797 Lymph, lymphoma .a 521 to 1501 1 to 979   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 979/980
(99 %)
6 diff
(99.4 %id)
BF795536 lymph, lymphoma, cell line .a 521 to 1309 1 to 783   available from MGC,   783/958
(81 %)
23 diff
(97.6 %id)
DB049062 testis .a 1367 to 1927 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
AI272244 brain, oligodendroglioma .a 1534 to 1948 1 to 415     Submitted on the opposite strand 415/417
(99 %)
2 diff
(99.6 %id)
BU188099 melanotic melanoma, skin .a 2135 to 3078 1 to 949       949/953
(99 %)
21 diff
(97.8 %id)
BF953017 nervous_normal .a 2207 to 2687 1 to 484       484/484
(100 %)
26 diff
(94.7 %id)
DN991363 brain, whole brain .a 2320 to 2957 1 to 637       637/657
(96 %)
7 diff
(99.0 %id)
DB522467 testis .a 2425 to 2864 1 to 440     Submitted on the opposite strand 440/460
(95 %)
11 diff
(97.7 %id)
TI_154130229   .a 2541 to 3357 906 to 94   AAA   813/1023
(79 %)
25 diff
(97.6 %id)
AW241703 pooled .a 2665 to 3361 679 to 3       675/679
(99 %)
50 diff
(92.7 %id)
CA419165 Chondrosarcoma Grade II, Left Pelvis .a 2808 to 3357 569 to 18   AAA   552/552
(100 %)
4 diff
(99.3 %id)
DB337979 testis .a 2827 to 3360 536 to 1       536/536
(100 %)
2 diff
(99.7 %id)
AW665944 pooled .a 2830 to 3365 537 to 2       536/540
(99 %)
16 diff
(97.1 %id)
DB335827 testis .a 2839 to 3360 523 to 1       523/523
(100 %)
1 diff
(99.9 %id)
AA019310 eye, retina .a 2843 to 3014 13 to 184       172/188
(91 %)
7 diff
(96.3 %id)
AW469718 pooled .a 2844 to 3357 525 to 12   AAA   514/525
(97 %)
9 diff
(98.3 %id)
AA923237 pooled .a 2872 to 3220 349 to 1       349/349
(100 %)
23 diff
(93.5 %id)
BG739948 skin .a 2978 to 3521 1 to 562   tiling clone,   562/778
(72 %)
33 diff
(95.8 %id)
BE701683 nervous_normal .a 3007 to 3259 263 to 12       252/263
(95 %)
0 diff
(100 %id)
BX645088   .a 3018 to 3641 1 to 623       623/623
(100 %)
6 diff
(99.1 %id)
CD242131 Blood vessels - aorta, basilar and artery .a 3045 to 3728 1 to 713       713/808
(88 %)
37 diff
(95.5 %id)
BM718335 eye, fetal eye .a 3122 to 3825 1 to 703       703/703
(100 %)
4 diff
(99.5 %id)
BX106658 pooled germ cell tumors .a 3138 to 3360 1 to 223   AAA   223/223
(100 %)
0 diff
(100 %id)
AA918449 pooled .a 3145 to 3361 220 to 4       217/220
(98 %)
0 diff
(100 %id)
AA738033 pooled germ cell tumors .a 3171 to 3360 223 to 34   AAA   190/190
(100 %)
0 diff
(100 %id)
BM546851 ovary (pool of 3) .a 3363 to 4318 27 to 991       965/1078
(89 %)
22 diff
(98.0 %id)
CR738594   .a 3372 to 3790 1 to 421       421/422
(99 %)
6 diff
(98.6 %id)
R12455 whole brain .a 3374 to 3701 1 to 340       340/384
(88 %)
23 diff
(94.1 %id)
R18230 whole brain .a 3374 to 3758 1 to 395       395/485
(81 %)
12 diff
(97.6 %id)
AA340123 brain .a 3420 to 3766 1 to 350       350/350
(100 %)
4 diff
(98.9 %id)
TI_151757015   .a 3427 to 4343 997 to 89   AAA   909/941
(96 %)
25 diff
(97.4 %id)
CN282428 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 3534 to 4273 1 to 740       740/740
(100 %)
2 diff
(99.8 %id)
CD356825 Blood vessels - aorta, basilar and artery .a 3566 to 4301 1 to 741       741/742
(99 %)
8 diff
(99.0 %id)
W37414 parathyroid gland, parathyroid tumor .a 3712 to 4214 1 to 520       520/577
(90 %)
15 diff
(97.5 %id)
R37341 whole brain .a 3767 to 4150 385 to 1       385/389
(98 %)
4 diff
(99.0 %id)
AA621628   .a 4401 to 4820 420 to 1       420/420
(100 %)
2 diff
(99.6 %id)
BQ023126 placenta .a 4488 to 4961 492 to 19   AAA   474/474
(100 %)
2 diff
(99.6 %id)
AA662497 normal prostate, Prostate .a 4534 to 4961 428 to 1       428/428
(100 %)
0 diff
(100 %id)
AW051571 pooled .a 4538 to 4960 424 to 1       424/424
(100 %)
1 diff
(99.8 %id)
R42166 whole brain .a 4578 to 4965 430 to 19   AAA   412/418
(98 %)
28 diff
(93.4 %id)
AI022097 parathyroid gland, parathyroid tumor .a 4588 to 4966 385 to 7       379/385
(98 %)
0 diff
(100 %id)
R51630 whole brain .a 4590 to 4966 398 to 19       380/399
(95 %)
0 diff
(100 %id)
AA779814   .a 4600 to 4966 371 to 5       367/371
(98 %)
0 diff
(100 %id)
D62952   .a 4603 to 4963 1 to 358       358/359
(99 %)
7 diff
(98.1 %id)
AA621426   .a 4624 to 4949 328 to 1       328/328
(100 %)
1 diff
(99.7 %id)
AI470588 Kidney .a 4660 to 4961 302 to 1       302/302
(100 %)
0 diff
(100 %id)
D79237 aorta .a 4669 to 4961 1 to 294       294/294
(100 %)
1 diff
(99.7 %id)
N50823 multiple sclerosis lesions .a 4682 to 4965 285 to 1       285/285
(100 %)
1 diff
(99.7 %id)
AA887956 colon, colon tumor RER+ .a 4705 to 4966 265 to 5       261/265
(98 %)
0 diff
(100 %id)
AA019034 eye, retina .a 4773 to 4968 196 to 1   tiling clone,   196/196
(100 %)
0 diff
(100 %id)
AK097633 testis .b 1 to 2845 2 to 2846 K195R K649R tiling clone, available from FLJ,   2846/2846
(100 %)
8 diff
(99.8 %id)
DB042858 testis .b 1 to 572 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA298223 hippocampus .c 1 to 584 2 to 585   tiling clone, capped   584/584
(100 %)
2 diff
(99.7 %id)
AK095729 brain .c 344 to 2980 1 to 2638 S506G tiling clone, available from FLJ,   2638/2638
(100 %)
4 diff
(99.9 %id)
DA519682 brain .c 345 to 906 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
AA622328 Prostate, prostate tumor .c 2392 to 2976 583 to 1       583/583
(100 %)
19 diff
(96.8 %id)
DB317136 brain .c 2433 to 2980 549 to 1       549/549
(100 %)
3 diff
(99.5 %id)
DA829210 placenta .c 2556 to 3257 2 to 704   tiling clone, capped   703/704
(99 %)
5 diff
(99.3 %id)
DB457029 testis .d 1 to 498 1 to 499   tiling clone,   499/499
(100 %)
1 diff
(99.8 %id)
BG717874 testis .d 18 to 456 1 to 443       443/740
(59 %)
12 diff
(98.4 %id)
AK057278 testis .d 23 to 2322 1 to 2300 F452S tiling clone, available from FLJ,   2300/2300
(100 %)
6 diff
(99.8 %id)
AK314396 testis .d 23 to 2187 1 to 2165 exact tiling clone,   2165/2165
(100 %)
2 diff
(100.0 %id)
NM_175613.1   .d 23 to 2322 1 to 2300 exact RefSeq, AAA   2300/2300
(100 %)
0 diff
(100 %id)
DB020570 testis .d 24 to 572 2 to 551   capped   550/555
(99 %)
3 diff
(99.5 %id)
DB027668 testis .d 24 to 613 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DB039832 testis .d 24 to 592 2 to 571   capped   570/579
(98 %)
4 diff
(99.4 %id)
DB057139 testis .d 24 to 552 2 to 531   capped   530/530
(100 %)
1 diff
(99.9 %id)
DB057205 testis .d 24 to 245 2 to 223   capped   222/222
(100 %)
1 diff
(99.6 %id)
DB057650 testis .d 24 to 555 2 to 534   capped   533/533
(100 %)
2 diff
(99.7 %id)
BC026119 testis .e 1 to 2297 6 to 2302 exact tiling clone, available from MGC, AAA   2297/2297
(100 %)
5 diff
(99.8 %id)
TI_1948095846   .e 63 to 926 127 to 992       866/1260
(68 %)
19 diff
(98.5 %id)
TI_1948096003   .e 63 to 866 126 to 931       806/1246
(64 %)
29 diff
(97.7 %id)
TI_1948095540   .e 68 to 1023 132 to 1086   tiling clone,   955/1222
(78 %)
23 diff
(98.2 %id)
TI_1948095541   .e 1413 to 2170 878 to 115       764/1173
(65 %)
11 diff
(99.1 %id)
TI_1948095847   .e 1478 to 2170 812 to 114       699/1214
(57 %)
12 diff
(99.1 %id)
TI_1948096004   .e 1540 to 2166 750 to 118       633/1264
(50 %)
6 diff
(99.6 %id)
AK125460 brain .f 1 to 3056 2 to 3057 exact tiling clone, available from FLJ,   3057/3057
(100 %)
3 diff
(100.0 %id)
DA796385 brain .f 1 to 489 2 to 490   capped   489/577
(84 %)
1 diff
(99.9 %id)
DA072149 cerebellum .f 483 to 940 131 to 588   capped   458/587
(78 %)
6 diff
(99.0 %id)
DA063654 cerebellum .f 487 to 687 257 to 457   capped   201/565
(35 %)
0 diff
(100 %id)
DA785467 brain .f 487 to 687 165 to 365   capped   201/465
(43 %)
0 diff
(100 %id)
DA906150   .f 487 to 980 77 to 570   capped   494/569
(86 %)
0 diff
(100 %id)
DR005626 Prostate .f 495 to 1172 1 to 678       678/678
(100 %)
0 diff
(100 %id)
DN993606 brain, whole brain .f 1443 to 2147 1 to 706       706/706
(100 %)
5 diff
(99.3 %id)
BX280328 pooled .f 1469 to 1967 9 to 507   tiling clone,   499/507
(98 %)
6 diff
(98.9 %id)
CV024402 mixed .f 1514 to 2133 1 to 620       620/620
(100 %)
0 diff
(100 %id)
CD697898 normal nasopharynx .f 2240 to 2867 12 to 639       628/639
(98 %)
8 diff
(98.8 %id)
AA382531 testis .f 2471 to 2760 1 to 290   tiling clone,   290/290
(100 %)
0 diff
(100 %id)
DB326730 brain .f 2508 to 3056 549 to 1       549/549
(100 %)
2 diff
(99.7 %id)
AF464063   .g 1 to 3064 1 to 3064 exact tiling clone,   3064/3064
(100 %)
3 diff
(100.0 %id)
NM_175612.1   .g 1 to 3072 1 to 3072 exact RefSeq,   3072/3072
(100 %)
0 diff
(100 %id)
AI809639 pooled .h 1 to 614 614 to 1 E8X S187F tiling clone,   614/614
(100 %)
2 diff
(99.7 %id)
AI220341 pooled .i 1 to 712 719 to 7 F7L E9G C10M K11* tiling clone,   713/733
(97 %)
15 diff
(98.0 %id)
AI808039 pooled .i 62 to 712 655 to 7   tiling clone,   649/655
(99 %)
4 diff
(99.4 %id)
DB171769 kidney, tumor tissue .j 1 to 574 2 to 577 exact tiling clone, capped   576/576
(100 %)
3 diff
(99.5 %id)
DB219884 trachea .k 1 to 564 2 to 566 exact tiling clone, capped   565/565
(100 %)
2 diff
(99.7 %id)
DA225428 brain .l 1 to 539 2 to 539 exact tiling clone, capped   538/549
(97 %)
2 diff
(99.7 %id)
CN295101 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .l 122 to 543 9 to 431   tiling clone,   423/431
(98 %)
6 diff
(98.7 %id)
DA782081 brain .m 1 to 491 2 to 493 exact tiling clone, capped   492/567
(86 %)
2 diff
(99.7 %id)
DA793922 brain .m 105 to 491 2 to 388 exact tiling clone, capped   387/549
(70 %)
0 diff
(100 %id)
DB373937 placenta .n-u 1 to 424 425 to 1 L3X T4H E5X S6K E7X ... tiling clone,   425/425
(100 %)
8 diff
(98.2 %id)
BM311036 Pancreas, Purified pancreatic islet Gene CNTN4, variant not shown         This clone was ignored    
BX489364.
matches multiple genes
  Gene CNTN4, variant not shown         This clone was ignored, also hits gene gydobo    
BX489364.
matches multiple genes
  Gene gydobo, variant not shown         This clone was ignored, also hits gene gydobo    
BX489365.
matches multiple genes
  Gene CNTN4, variant not shown         This clone was ignored, also hits gene gydobo    
BX489365.
matches multiple genes
  Gene gydobo, variant not shown         This clone was ignored, also hits gene gydobo    
CK821591 Pancreas, Purified pancreatic islet Gene CNTN4, variant not shown         Submitted on the opposite strand    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI