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Gene CNTN3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
53 supporting clones for gene CNTN3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_020872.1   CNTN3.a 1 to 4997 1 to 4997 exact RefSeq,   4997/4997
(100 %)
1 diff
(100.0 %id)
DR002512 fetal brain CNTN3.a 50 to 763 1 to 712       712/712
(100 %)
10 diff
(98.6 %id)
BC150608 Testicle, PCR rescued clones CNTN3.a 53 to 3893 1 to 3841 N708S tiling clone,   3841/3841
(100 %)
2 diff
(100.0 %id)
TI_1971554891   CNTN3.a 53 to 841 246 to 1033     Submitted on the opposite strand 788/1184
(66 %)
9 diff
(99.3 %id)
TI_1971555033   CNTN3.a 53 to 887 243 to 1069     Submitted on the opposite strand 827/1260
(65 %)
16 diff
(98.8 %id)
TI_1971556893   CNTN3.a 53 to 877 833 to 9       825/1276
(64 %)
0 diff
(100 %id)
TI_1971558091   CNTN3.a 53 to 1031 50 to 1025       976/1261
(77 %)
25 diff
(98.1 %id)
TI_891526350   CNTN3.a 102 to 438 388 to 50       339/501
(67 %)
2 diff
(99.7 %id)
DR731364 pooled CNTN3.a 106 to 438 367 to 35     Submitted on the opposite strand 333/368
(90 %)
0 diff
(100 %id)
DR731363 pooled CNTN3.a 145 to 515 1 to 371       371/372
(99 %)
5 diff
(98.7 %id)
AB040929   CNTN3.a 404 to 4997 1 to 4594   tiling clone, available from KIAA,   4594/4594
(100 %)
2 diff
(100.0 %id)
DA194316 amygdala CNTN3.a 1457 to 2037 2 to 583   capped   582/582
(100 %)
3 diff
(99.5 %id)
TI_1968235469   CNTN3.a 2110 to 2901 803 to 13       791/805
(98 %)
15 diff
(98.2 %id)
BX951442   CNTN3.a 2400 to 2995 1 to 597       597/597
(100 %)
2 diff
(99.7 %id)
AL512746 brain CNTN3.a 3028 to 4997 1 to 1970   available from DKFZ, AAA   1970/1970
(100 %)
0 diff
(100 %id)
DA541697 lung CNTN3.a 3043 to 3637 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DA153253 amygdala CNTN3.a 3071 to 3630 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
BI918300 brain CNTN3.a 3111 to 3663 1 to 553       553/553
(100 %)
0 diff
(100 %id)
TI_57243216   CNTN3.a 3111 to 3663 70 to 622       553/622
(88 %)
6 diff
(99.1 %id)
BI836405 pooled pancreas and spleen CNTN3.a 3325 to 4117 1 to 804       804/806
(99 %)
20 diff
(97.6 %id)
TI_57162700   CNTN3.a 3325 to 4117 29 to 832       804/834
(96 %)
20 diff
(97.7 %id)
DB535417 hippocampus CNTN3.a 3337 to 4028 1 to 691     Submitted on the opposite strand 691/691
(100 %)
1 diff
(99.9 %id)
N48433 multiple sclerosis lesions CNTN3.a 3576 to 3750 1 to 175   fully sequenced,   175/175
(100 %)
0 diff
(100 %id)
N39078 multiple sclerosis lesions CNTN3.a 3720 to 4029 315 to 1   fully sequenced,   315/315
(100 %)
0 diff
(100 %id)
AV725210 hypothalamus CNTN3.a 3724 to 4366 1 to 643       643/643
(100 %)
33 diff
(94.9 %id)
AV727219 hypothalamus CNTN3.a 3724 to 4419 1 to 692       692/706
(98 %)
24 diff
(96.7 %id)
AI186035 lung CNTN3.a 3770 to 4028 259 to 1       259/259
(100 %)
0 diff
(100 %id)
BX103598 multiple sclerosis lesions CNTN3.a 3984 to 4662 1 to 678       678/678
(100 %)
3 diff
(99.6 %id)
AV731992 hypothalamus CNTN3.a 4067 to 4745 92 to 766       675/795
(84 %)
44 diff
(94.5 %id)
AK001157   CNTN3.a 4073 to 4997 1 to 925   available from FLJ,   925/925
(100 %)
2 diff
(99.8 %id)
AU123137   CNTN3.a 4074 to 4887 2 to 824   capped   823/858
(95 %)
17 diff
(98.1 %id)
TI_154118211   CNTN3.a 4127 to 4983 953 to 103   AAA   851/986
(86 %)
0 diff
(100 %id)
BQ432917 testis CNTN3.a 4140 to 4877 1 to 745       745/830
(89 %)
22 diff
(97.4 %id)
TI_57219883   CNTN3.a 4197 to 4951 59 to 819   AAA   761/1115
(68 %)
13 diff
(98.9 %id)
BI757019 brain CNTN3.a 4198 to 4951 1 to 760       760/1075
(70 %)
13 diff
(98.8 %id)
D62793   CNTN3.a 4384 to 4770 1 to 384   fully sequenced,   384/384
(100 %)
3 diff
(99.3 %id)
BE221817 Kidney CNTN3.a 4417 to 4997 581 to 1       581/581
(100 %)
1 diff
(99.9 %id)
BF591901 Kidney CNTN3.a 4466 to 4997 532 to 1       532/532
(100 %)
1 diff
(99.9 %id)
AI659681 Prostate CNTN3.a 4510 to 4997 506 to 19   AAA   488/488
(100 %)
1 diff
(99.8 %id)
N50845 multiple sclerosis lesions CNTN3.a 4539 to 4997 461 to 1       461/461
(100 %)
3 diff
(99.4 %id)
AW152332 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors CNTN3.a 4543 to 4997 454 to 1       454/454
(100 %)
1 diff
(99.8 %id)
D62792   CNTN3.a 4740 to 4997 258 to 1   fully sequenced,   258/258
(100 %)
0 diff
(100 %id)
DB274228 uterus CNTN3.b 1 to 559 2 to 564 L99P W100V tiling clone, capped   563/563
(100 %)
5 diff
(99.2 %id)
TI_1971554269   CNTN3.b 160 to 1278 1167 to 59 T8P F13S Y14I R15G T16L ... tiling clone,   1111/1287
(86 %)
13 diff
(99.0 %id)
AV747743 Pituitary CNTN3.b 173 to 521 1 to 338   tiling clone,   338/338
(100 %)
7 diff
(98.0 %id)
AL707243 human skeletal muscle CNTN3.c-u 1 to 540 1 to 540   tiling clone,   540/540
(100 %)
0 diff
(100 %id)
DB468200 hippocampus CNTN3.c-u 161 to 867 1 to 707 exact tiling clone,   707/707
(100 %)
2 diff
(99.8 %id)
BX100135 brain, pineal gland CNTN3.d-u 1 to 289 1 to 289   tiling clone,   289/289
(100 %)
1 diff
(99.7 %id)
AA708050 pineal gland CNTN3.d-u 249 to 574 327 to 2 exact tiling clone,   326/327
(99 %)
0 diff
(100 %id)
AA757468 pineal gland CNTN3.d-u 365 to 545 183 to 1       183/186
(98 %)
0 diff
(100 %id)
BG927084 cartilage CNTN3.d-u 383 to 726 417 to 74 exact tiling clone,   344/383
(89 %)
0 diff
(100 %id)
DA162617 amygdala CNTN3.e 1 to 577 2 to 578   tiling clone, capped   577/577
(100 %)
0 diff
(100 %id)
BX502033 Liver Gene CNTN3, variant not shown              
DB306223 brain Gene CNTN3, variant not shown              
DA248245 brain Gene CNTN3, variant not shown       capped      
DA249860 brain Gene CNTN3, variant not shown       capped      
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d-u, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC