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Gene CNOT4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
343 supporting clones for gene CNOT4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA887320   .a 1 to 563 2 to 564   tiling clone, capped   563/563
(100 %)
1 diff
(99.9 %id)
AL519669 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .a 23 to 820 1 to 796   tiling clone,   796/909
(87 %)
59 diff
(93.6 %id)
DA247976 brain .a 35 to 591 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB095215 testis .a 35 to 591 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
BI257487 cervical carcinoma cell line, cervix .a 37 to 631 12 to 608   tiling clone,   597/609
(98 %)
9 diff
(98.6 %id)
AK074671 mammary gland .a 807 to 3546 1 to 2749   tiling clone, available from FLJ,   2749/2749
(100 %)
3 diff
(99.9 %id)
AL580308 T cells from T cell leukemia .a 2713 to 3490 773 to 3   tiling clone,   771/937
(82 %)
0 diff
(100 %id)
AL519668 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .a 2743 to 3527 795 to 1   tiling clone,   795/903
(88 %)
40 diff
(95.6 %id)
TI_154133937   .a 2744 to 3544 902 to 94   tiling clone, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 809/910
(88 %)
41 diff
(95.5 %id)
CA439725 lung, Lung Focal Fibrosis .a 2749 to 3462 1 to 710   tiling clone, Submitted on the opposite strand 710/710
(100 %)
13 diff
(98.2 %id)
BE739755 hypernephroma, Kidney .a 2795 to 3479 715 to 24       692/715
(96 %)
0 diff
(100 %id)
BE893348 melanotic melanoma, skin .a 2834 to 3534 1 to 702       702/706
(99 %)
23 diff
(96.8 %id)
H73452 liver and spleen .a 2837 to 3216 1 to 388       388/393
(98 %)
14 diff
(96.5 %id)
TI_57181223   .a 2864 to 3547 28 to 717       690/866
(79 %)
6 diff
(99.4 %id)
H61519 liver and spleen .a 2866 to 3144 1 to 280       280/280
(100 %)
1 diff
(99.7 %id)
TI_57181152   .a 2871 to 3547 58 to 727       670/728
(92 %)
12 diff
(98.4 %id)
BI767511 pooled lung and spleen .a 2872 to 3547 1 to 682       682/831
(82 %)
11 diff
(98.7 %id)
BI768728 pooled lung and spleen .a 2873 to 3547 1 to 668       668/669
(99 %)
12 diff
(98.3 %id)
BF132602 lung, mucoepidermoid carcinoma .a 2896 to 3544 11 to 672       662/726
(91 %)
15 diff
(98.0 %id)
R09785 liver and spleen .a 2898 to 3200 1 to 312       312/313
(99 %)
12 diff
(96.2 %id)
R09814 liver and spleen .a 2898 to 3176 1 to 294       294/297
(98 %)
16 diff
(94.7 %id)
BF439851 brain, glioblastoma (pooled) .a 2910 to 3546 637 to 1       637/637
(100 %)
12 diff
(98.2 %id)
BF439999 brain, glioblastoma (pooled) .a 2933 to 3546 614 to 1       614/614
(100 %)
1 diff
(99.9 %id)
BF115491 brain, glioblastoma (pooled) .a 2970 to 3544 577 to 1       577/577
(100 %)
4 diff
(99.4 %id)
CB241196 Human Lung Epithelial cells, lung .a 2975 to 3546 588 to 17   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 572/581
(98 %)
1 diff
(99.9 %id)
AW303275 pooled .a 2991 to 3536 557 to 12       546/557
(98 %)
0 diff
(100 %id)
BF446457 carcinoid, lung .a 2993 to 3547 562 to 7       556/562
(98 %)
0 diff
(100 %id)
BE857621 brain, glioblastoma (pooled) .a 3005 to 3544 540 to 1       540/540
(100 %)
1 diff
(99.9 %id)
FN070723 breast carcinoma .a 3031 to 3136 1 to 109       109/111
(98 %)
10 diff
(91.0 %id)
AA286950 germinal center B cell .a 3031 to 3539 509 to 1     Submitted on the opposite strand 509/509
(100 %)
1 diff
(99.9 %id)
AI760582 B-cell, chronic lymphotic leukemia .a 3045 to 3505 462 to 1       462/462
(100 %)
4 diff
(99.2 %id)
DB551527 hippocampus .a 3046 to 3546 1 to 501     Submitted on the opposite strand 501/501
(100 %)
3 diff
(99.5 %id)
DB545522 hippocampus .a 3047 to 3546 1 to 500     Submitted on the opposite strand 500/501
(99 %)
4 diff
(99.3 %id)
CA503026 Human Lung Epithelial cells, lung .a 3051 to 3546 512 to 17   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 496/505
(98 %)
2 diff
(99.7 %id)
BM665786 eye, Retina Foveal and Macular .a 3051 to 3546 512 to 17   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 496/505
(98 %)
2 diff
(99.7 %id)
FN073340 breast carcinoma .a 3064 to 3180 1 to 114       114/115
(99 %)
5 diff
(95.7 %id)
AI359814 brain, glioblastoma (pooled) .a 3077 to 3547 477 to 7       471/477
(98 %)
0 diff
(100 %id)
BE670476 carcinoid, lung .a 3080 to 3541 474 to 13   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 462/462
(100 %)
2 diff
(99.6 %id)
AW341260 carcinoid, lung .a 3083 to 3547 467 to 3       465/467
(99 %)
0 diff
(100 %id)
AI457599 pooled .a 3084 to 3547 464 to 1       464/464
(100 %)
1 diff
(99.8 %id)
AI498862 anaplastic oligodendroglioma, brain .a 3084 to 3547 464 to 1       464/464
(100 %)
1 diff
(99.8 %id)
AI636679 pooled germ cell tumors .a 3084 to 3547 468 to 5       464/468
(99 %)
0 diff
(100 %id)
AI681623 carcinoid, lung .a 3084 to 3547 466 to 3       464/466
(99 %)
0 diff
(100 %id)
BF592990 pooled germ cell tumors .a 3084 to 3547 468 to 5       464/468
(99 %)
0 diff
(100 %id)
AA630801   .a 3090 to 3546 457 to 1       457/457
(100 %)
1 diff
(99.8 %id)
AI311667 2 pooled tumors (clear cell type), Kidney .a 3090 to 3546 491 to 35   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 457/457
(100 %)
1 diff
(99.8 %id)
AI311126 2 pooled tumors (clear cell type), Kidney .a 3092 to 3547 463 to 8       456/463
(98 %)
0 diff
(100 %id)
AI275428 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3094 to 3546 463 to 11   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 453/453
(100 %)
1 diff
(99.8 %id)
AW237003 pooled germ cell tumors .a 3094 to 3547 458 to 5       454/458
(99 %)
0 diff
(100 %id)
DB527725 testis .a 3095 to 3546 1 to 452     Submitted on the opposite strand 452/452
(100 %)
1 diff
(99.8 %id)
AI955269 brain, four pooled pituitary adenomas .a 3095 to 3546 452 to 1       452/452
(100 %)
1 diff
(99.8 %id)
AA703197 liver and spleen .a 3096 to 3544 449 to 1       449/449
(100 %)
3 diff
(99.4 %id)
BE466164 carcinoid, lung .a 3096 to 3547 454 to 3       452/454
(99 %)
0 diff
(100 %id)
AI362127 brain, glioblastoma (pooled) .a 3103 to 3546 444 to 1       444/444
(100 %)
1 diff
(99.8 %id)
W69975 heart .a 3105 to 3446 1 to 347   fully sequenced, AAA   347/347
(100 %)
4 diff
(98.9 %id)
AI363282 brain, glioblastoma (pooled) .a 3107 to 3546 440 to 1       440/440
(100 %)
2 diff
(99.6 %id)
DB547880 hippocampus .a 3111 to 3546 1 to 436     Submitted on the opposite strand 436/437
(99 %)
2 diff
(99.6 %id)
BE669852 carcinoid, lung .a 3112 to 3547 443 to 7       437/443
(98 %)
0 diff
(100 %id)
DB513595 testis .a 3119 to 3546 1 to 428     Submitted on the opposite strand 428/428
(100 %)
2 diff
(99.6 %id)
BF739822 Kidney .a 3121 to 3546 422 to 1       422/423
(99 %)
18 diff
(95.8 %id)
AI381294   .a 3130 to 3546 417 to 1       417/417
(100 %)
1 diff
(99.8 %id)
AW664823 pooled .a 3141 to 3547 414 to 1       414/414
(100 %)
7 diff
(98.4 %id)
AA706129 uterus .a 3142 to 3544 403 to 1       403/403
(100 %)
25 diff
(93.8 %id)
BE551875 pooled germ cell tumors .a 3144 to 3547 404 to 1       404/404
(100 %)
2 diff
(99.6 %id)
AA765306 germinal center B cell .a 3146 to 3546 419 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 401/401
(100 %)
1 diff
(99.8 %id)
AA884616 pooled .a 3147 to 3547 407 to 7       401/407
(98 %)
0 diff
(100 %id)
AI089207 pooled .a 3155 to 3546 405 to 14   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 392/392
(100 %)
1 diff
(99.8 %id)
BU566193 mixed (pool of 40 RNAs) .a 3170 to 3546 1 to 379       379/414
(91 %)
13 diff
(96.9 %id)
H89688 melanocyte .a 3200 to 3495 296 to 1       296/296
(100 %)
5 diff
(98.4 %id)
AI206920 pooled germ cell tumors .a 3203 to 3546 344 to 1       344/344
(100 %)
1 diff
(99.8 %id)
AW002503 pooled germ cell tumors .a 3205 to 3546 342 to 1       342/342
(100 %)
3 diff
(99.2 %id)
AI457181 carcinoid, lung .a 3206 to 3544 360 to 22   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 339/339
(100 %)
3 diff
(99.2 %id)
BM768412 stomach .a 3210 to 3544 1 to 335   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 335/335
(100 %)
1 diff
(99.8 %id)
AW594368 pooled germ cell tumors .a 3212 to 3546 346 to 1       346/346
(100 %)
12 diff
(96.6 %id)
AI284731 ovary, tumor, 5 pooled (see description) .a 3222 to 3544 333 to 11   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 323/323
(100 %)
0 diff
(100 %id)
AA910630 pooled germ cell tumors .a 3223 to 3547 330 to 5       326/330
(98 %)
0 diff
(100 %id)
AI027011 parathyroid gland, parathyroid tumor .a 3223 to 3546 346 to 23   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 324/324
(100 %)
1 diff
(99.7 %id)
DN949458.
matches multiple genes
insulinoma, Pancreas .a 3227 to 3546 372 to 52   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base), also hits gene THY1 321/321
(100 %)
2 diff
(99.4 %id)
BQ013902 placenta .a 3229 to 3547 335 to 17       319/335
(95 %)
0 diff
(100 %id)
AA805090 germinal center B cell .a 3272 to 3547 290 to 15       276/290
(95 %)
0 diff
(100 %id)
DB516924 testis .a 3274 to 3546 1 to 273     Submitted on the opposite strand 273/273
(100 %)
1 diff
(99.7 %id)
AI420565 Prostate .a 3274 to 3544 293 to 23   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 271/271
(100 %)
9 diff
(96.7 %id)
AI635521 pooled germ cell tumors .a 3305 to 3547 250 to 8       243/250
(97 %)
0 diff
(100 %id)
AI446286 adenocarcinoma, Pancreas .a 3314 to 3547 240 to 7       234/240
(97 %)
0 diff
(100 %id)
AA721417 germinal center B cell .a 3318 to 3545 236 to 9       228/236
(96 %)
0 diff
(100 %id)
AA334991   .a 3338 to 3538 206 to 1       206/206
(100 %)
5 diff
(97.6 %id)
AI031706 brain, glioblastoma (pooled) .a 3372 to 3547 184 to 9       176/184
(95 %)
0 diff
(100 %id)
FN133245 breast carcinoma .a 3412 to 3541 1 to 124       124/125
(99 %)
12 diff
(90.4 %id)
W69976 heart .a 3416 to 3546 132 to 1   fully sequenced,   132/132
(100 %)
1 diff
(99.3 %id)
NM_001190849.1   .b 1 to 3554 1 to 3554 exact RefSeq,   3554/3554
(100 %)
0 diff
(100 %id)
NM_001190850.1   .b 1 to 3554 1 to 3563 S271R P272Y I273D D274T K275P ... RefSeq,   3563/3563
(100 %)
1 diff
(100.0 %id)
DA189543 amygdala .b 13 to 586 2 to 575   tiling clone, capped   574/574
(100 %)
0 diff
(100 %id)
BX646338   .b 15 to 646 1 to 632       632/632
(100 %)
3 diff
(99.6 %id)
TI_44165950   .b 17 to 613 115 to 712       598/712
(83 %)
6 diff
(99.2 %id)
BG718269 testis .b 21 to 732 1 to 712       712/712
(100 %)
8 diff
(98.9 %id)
BI546014 brain, hippocampus .b 21 to 613 1 to 594       594/594
(100 %)
5 diff
(99.2 %id)
BI463137 testis .b 21 to 720 1 to 704       704/704
(100 %)
9 diff
(98.8 %id)
BI465096 testis .b 21 to 589 1 to 575       575/827
(69 %)
22 diff
(97.4 %id)
AW998002 breast_normal .b 22 to 375 14 to 369       356/400
(89 %)
7 diff
(98.3 %id)
DA102692 cerebellum .b 22 to 572 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
BG532301 embryonal carcinoma, testis .b 25 to 606 1 to 588       588/811
(72 %)
15 diff
(98.2 %id)
DB448496 testis .b 26 to 445 1 to 419       419/419
(100 %)
6 diff
(98.6 %id)
DB462290 testis .b 26 to 503 1 to 478       478/478
(100 %)
1 diff
(99.8 %id)
DB463075 hippocampus .b 26 to 251 1 to 226       226/356
(63 %)
9 diff
(97.5 %id)
DB469730 hippocampus .b 26 to 474 1 to 448       448/448
(100 %)
8 diff
(98.3 %id)
DB481964 hippocampus .b 26 to 483 1 to 459       459/459
(100 %)
2 diff
(99.6 %id)
DB019952 testis .b 26 to 480 77 to 531   capped   455/530
(85 %)
7 diff
(98.7 %id)
DA169250 amygdala .b 27 to 511 2 to 486   capped   485/485
(100 %)
0 diff
(100 %id)
DA230731 brain .b 27 to 599 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
AL558502 T cells from T cell leukemia .b 27 to 1018 1 to 989       989/989
(100 %)
20 diff
(98.0 %id)
DB450316 testis .b 27 to 488 1 to 462       462/462
(100 %)
1 diff
(99.8 %id)
AV762962 bone marrow .b 27 to 447 1 to 411       411/411
(100 %)
6 diff
(98.6 %id)
DB476820 hippocampus .b 28 to 535 1 to 509       509/509
(100 %)
1 diff
(99.9 %id)
DB479201 hippocampus .b 28 to 505 1 to 478       478/483
(98 %)
1 diff
(99.8 %id)
DW426582 Liver .b 29 to 295 16 to 282       267/282
(94 %)
6 diff
(97.9 %id)
DB451452 testis .b 29 to 520 1 to 492       492/492
(100 %)
0 diff
(100 %id)
DA336465 hippocampus .b 30 to 614 2 to 587   capped   586/586
(100 %)
2 diff
(99.7 %id)
DB482675 hippocampus .b 30 to 511 1 to 483       483/495
(97 %)
6 diff
(98.8 %id)
DA242787 brain .b 31 to 604 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA484052 brain .b 31 to 581 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA811540 brain .b 31 to 581 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
AA376235 lung .b 32 to 212 1 to 180       180/189
(95 %)
2 diff
(99.0 %id)
DA164521 amygdala .b 32 to 542 2 to 513   capped   512/512
(100 %)
1 diff
(99.9 %id)
DA214228 brain .b 32 to 500 2 to 471   capped   470/470
(100 %)
1 diff
(99.8 %id)
DB231654 trachea .b 32 to 624 2 to 595   capped   594/594
(100 %)
3 diff
(99.5 %id)
AW963842   .b 33 to 642 1 to 611       611/611
(100 %)
14 diff
(97.8 %id)
BX645829   .b 33 to 545 1 to 513       513/513
(100 %)
4 diff
(99.3 %id)
AK300365 placenta .b 35 to 2902 1 to 2868 N178D K201R V545I tiling clone,   2868/2868
(100 %)
5 diff
(99.9 %id)
DA112336 cerebellum .b 35 to 577 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DA225120 brain .b 35 to 546 2 to 513   capped   512/512
(100 %)
2 diff
(99.7 %id)
BP284607 bone marrow .b 36 to 511 1 to 476       476/597
(79 %)
6 diff
(99.0 %id)
DA857791 placenta .b 36 to 579 2 to 546   capped   545/545
(100 %)
2 diff
(99.7 %id)
CD704989 normal nasopharynx .b 37 to 612 42 to 617       576/617
(93 %)
8 diff
(98.8 %id)
BP230673 brain .b 37 to 618 1 to 581       581/581
(100 %)
6 diff
(99.0 %id)
BP356904 mammary gland .b 37 to 619 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA122501 cerebellum .b 38 to 600 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DA224837 brain .b 38 to 549 2 to 515   capped   514/514
(100 %)
2 diff
(99.7 %id)
DA235596 brain .b 38 to 618 2 to 583   capped   582/582
(100 %)
2 diff
(99.7 %id)
DA249556 brain .b 38 to 609 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA402160 thalamus .b 38 to 579 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA413606 thalamus .b 38 to 587 2 to 552   capped   551/553
(99 %)
2 diff
(99.7 %id)
AL118815 amygdala .b 38 to 246 1 to 209       209/211
(99 %)
4 diff
(98.2 %id)
DA509444 brain .b 38 to 615 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA514498 brain .b 38 to 584 2 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
DA522886 brain .b 38 to 606 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA554375   .b 38 to 600 2 to 565   capped   564/564
(100 %)
3 diff
(99.5 %id)
BM472095 melanotic melanoma, skin .b 38 to 630 10 to 605       596/1134
(52 %)
22 diff
(98.1 %id)
DA678425   .b 38 to 290 2 to 254   capped   253/253
(100 %)
0 diff
(100 %id)
DA704892   .b 38 to 500 2 to 464   capped   463/463
(100 %)
0 diff
(100 %id)
DA754727   .b 38 to 577 2 to 542   capped   541/541
(100 %)
2 diff
(99.7 %id)
DA768104 brain .b 38 to 351 2 to 315   capped   314/314
(100 %)
0 diff
(100 %id)
DA794469 brain .b 38 to 408 2 to 372   capped   371/371
(100 %)
0 diff
(100 %id)
DA801139 brain .b 38 to 572 11 to 545   capped   535/535
(100 %)
0 diff
(100 %id)
DA806813 brain .b 38 to 605 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA806839 brain .b 38 to 602 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB081450 testis .b 38 to 592 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
BM803693 leiomyosarcoma, uterus .b 41 to 1019 1 to 988       988/1047
(94 %)
29 diff
(97.3 %id)
DB450814 testis .b 42 to 511 1 to 469       469/482
(97 %)
8 diff
(98.4 %id)
DB235500 trachea .b 43 to 500 2 to 460   capped   459/459
(100 %)
2 diff
(99.6 %id)
BQ439454 embryonal carcinoma, cell line, testis .b 44 to 897 1 to 859       859/906
(94 %)
20 diff
(97.8 %id)
DA102930 cerebellum .b 46 to 500 2 to 456   capped   455/455
(100 %)
0 diff
(100 %id)
BM564737 eye, retinoblastoma .b 46 to 786 1 to 743       743/993
(74 %)
7 diff
(99.3 %id)
BQ879075 dorsal root ganglia .b 46 to 893 1 to 853       853/904
(94 %)
10 diff
(98.9 %id)
BG900255 cartilage .b 48 to 349 88 to 389       302/319
(94 %)
8 diff
(97.5 %id)
BM472243 embryonal carcinoma, cell line, testis .b 53 to 791 1 to 741       741/1020
(72 %)
9 diff
(99.2 %id)
AW500197 lymph .b 62 to 569 9 to 516     Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 508/516
(98 %)
5 diff
(99.1 %id)
CN304692 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 68 to 735 1 to 668       668/668
(100 %)
1 diff
(99.9 %id)
BM838577 Ascites, stomach .b 152 to 504 1 to 353       353/353
(100 %)
0 diff
(100 %id)
BF174658 blood .b 360 to 599 1 to 238       238/242
(98 %)
8 diff
(96.7 %id)
DB058236 testis .b 510 to 1048 2 to 540   tiling clone, capped   539/539
(100 %)
0 diff
(100 %id)
DA168349 amygdala .b 628 to 1185 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
CN304693 embryonic stem cells, cell lines H1, H7, andH9 .b 646 to 1395 7 to 765       759/765
(99 %)
8 diff
(99.0 %id)
BX390647   .b 646 to 1577 1 to 933       933/933
(100 %)
8 diff
(99.2 %id)
BG108479 Bone, osteosarcoma, cell line .b 745 to 1394 1 to 659       659/659
(100 %)
3 diff
(99.6 %id)
R74302 placenta .b 752 to 1152 1 to 402       402/523
(76 %)
2 diff
(99.7 %id)
DA646385 mammary gland .b 775 to 1607 2 to 840   capped   839/839
(100 %)
5 diff
(99.5 %id)
BQ307342 breast .b 978 to 1152 191 to 18       174/194
(89 %)
0 diff
(100 %id)
EH333651   .b 990 to 1068 1 to 80       80/80
(100 %)
1 diff
(98.8 %id)
DA045525 bladder .b 1063 to 1584 2 to 532   capped   531/531
(100 %)
2 diff
(99.7 %id)
BE178637 head_neck .b 1065 to 1290 1 to 236       236/236
(100 %)
16 diff
(93.3 %id)
BF331922 breast .b 1078 to 1516 1 to 439       439/442
(99 %)
14 diff
(96.9 %id)
BI460975 testis .b 1097 to 1781 1 to 685       685/685
(100 %)
4 diff
(99.5 %id)
R07596 liver and spleen .b 1102 to 1414 1 to 334       334/398
(83 %)
17 diff
(95.8 %id)
AA626520 lung, lung carcinoma .b 1134 to 1446 1 to 313       313/313
(100 %)
1 diff
(99.7 %id)
BG211864   .b 1142 to 1912 1 to 770       770/770
(100 %)
49 diff
(93.7 %id)
BG192728   .b 1143 to 1950 4 to 814       811/821
(98 %)
34 diff
(95.9 %id)
DA184451 amygdala .b 1151 to 1606 2 to 457   capped   456/456
(100 %)
0 diff
(100 %id)
BG107789 Bone, osteosarcoma, cell line .b 1154 to 1923 1 to 763       763/846
(90 %)
15 diff
(98.3 %id)
AW958149   .b 1277 to 1958 1 to 684       684/686
(99 %)
22 diff
(96.8 %id)
AW965528   .b 1277 to 1900 1 to 623       623/623
(100 %)
13 diff
(98.0 %id)
BP229392 brain .b 1281 to 1862 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
BX952065   .b 1282 to 1917 1 to 636       636/636
(100 %)
0 diff
(100 %id)
AA703496 liver and spleen .b 1371 to 1837 481 to 17       465/481
(96 %)
0 diff
(100 %id)
CR745302 pooled .b 1394 to 1862 1 to 470       470/470
(100 %)
1 diff
(99.8 %id)
BG002656 placenta_normal .b 1405 to 1802 450 to 51       400/467
(85 %)
0 diff
(100 %id)
Z44319 brain, total brain .b 1431 to 1699 1 to 269       269/269
(100 %)
0 diff
(100 %id)
R07597 liver and spleen .b 1469 to 1837 398 to 18       381/400
(95 %)
0 diff
(100 %id)
BE712091 head_neck .b 1489 to 1833 343 to 1       343/343
(100 %)
2 diff
(99.5 %id)
DB188580 liver, tumor tissue .b 1500 to 2057 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
BF695576 brain, primitive neuroectoderm .b 1538 to 2229 1 to 685       686/884
(77 %)
14 diff
(98.5 %id)
CN304691 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 1546 to 2359 1 to 816       816/816
(100 %)
8 diff
(99.1 %id)
BE932995 head_neck .b 1586 to 1710 129 to 6       124/129
(96 %)
0 diff
(100 %id)
BF088285 head_neck .b 1586 to 1712 139 to 13       127/139
(91 %)
0 diff
(100 %id)
AW900258 nervous_normal .b 1594 to 1864 275 to 6       270/275
(98 %)
0 diff
(100 %id)
BE928650 denis_drash .b 1639 to 1845 1 to 207       207/207
(100 %)
1 diff
(99.6 %id)
BQ340090 nervous_normal .b 1647 to 1794 29 to 180       152/182
(83 %)
11 diff
(94.0 %id)
CA396599 eye, RPE/choroid .b 1731 to 2309 1 to 579   tiling clone,   579/579
(100 %)
0 diff
(100 %id)
BE842693 stomach .b 2088 to 2369 319 to 23       297/330
(90 %)
13 diff
(96.1 %id)
CA433453 mixed .b 2161 to 2466 324 to 19   AAA   306/311
(98 %)
1 diff
(99.7 %id)
BG219686   .b 2166 to 2474 1 to 309       309/309
(100 %)
1 diff
(99.7 %id)
DN912547   .b 2173 to 2279 1 to 107       107/107
(100 %)
2 diff
(98.2 %id)
AW474172 lymph node, lymphoma, follicular mixed small and largecell .b 2338 to 2722 385 to 1       385/400
(96 %)
15 diff
(96.3 %id)
AW087256 colon, moderately differentiated adenocarcinoma .b 2414 to 2721 311 to 1       311/463
(67 %)
9 diff
(98.1 %id)
AA496532 ovarian tumor, ovary .b 2425 to 2725 1 to 300       300/300
(100 %)
3 diff
(99.0 %id)
BF245744 brain, glioblastoma .b 2429 to 3090 1 to 663       663/862
(76 %)
18 diff
(98.0 %id)
BP421843 small intestine .b 2445 to 2934 12 to 502     Submitted on the opposite strand 491/502
(97 %)
6 diff
(98.9 %id)
BF691337 melanotic melanoma, high MDR, skin .b 2524 to 3279 1 to 744       744/893
(83 %)
47 diff
(94.8 %id)
BG164170 hypernephroma, cell line, Kidney .b 2567 to 3239 1 to 674       674/674
(100 %)
2 diff
(99.8 %id)
BG292117 bladder, transitional cell papilloma, cell line .b 2567 to 3280 1 to 706       706/907
(77 %)
13 diff
(98.6 %id)
BM825749 Ascites, stomach .b 2643 to 2931 1 to 289       289/289
(100 %)
0 diff
(100 %id)
AA789077 germinal center B cell .b 2659 to 2938 1 to 280     Submitted on the opposite strand 280/280
(100 %)
1 diff
(99.7 %id)
AA286904 germinal center B cell .b 2665 to 2854 1 to 190     Submitted on the opposite strand 190/190
(100 %)
0 diff
(100 %id)
W93564 heart .b 2670 to 3053 1 to 387   fully sequenced,   387/387
(100 %)
5 diff
(98.8 %id)
AI688576 pooled .b 2681 to 3181 17 to 517   tiling clone, Submitted on the opposite strand 501/517
(96 %)
6 diff
(98.9 %id)
DB361058 mammary gland .b 2986 to 3553 567 to 1       567/567
(100 %)
11 diff
(98.1 %id)
W93715 heart .b 3023 to 3553 537 to 1   fully sequenced,   537/537
(100 %)
12 diff
(97.8 %id)
AW576246 lymph .b 3102 to 3551 467 to 18   tiling clone, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 450/450
(100 %)
0 diff
(100 %id)
R74208 placenta .b 3193 to 3479 287 to 1       287/287
(100 %)
1 diff
(99.7 %id)
NM_013316.3   .c 1 to 3341 1 to 3341 exact RefSeq,   3341/3341
(100 %)
0 diff
(100 %id)
NM_001190847.1   .c 1 to 3341 1 to 3350 S271R P272Y I273D D274T K275P ... RefSeq,   3350/3350
(100 %)
1 diff
(100.0 %id)
AK314540   .c 37 to 2251 1 to 2216 E329G tiling clone,   2216/2216
(100 %)
4 diff
(99.9 %id)
U71267   .c 51 to 3338 1 to 3297 S271R P272Y I273D D274T K275P ... tiling clone,   3297/3297
(100 %)
8 diff
(99.8 %id)
AF091094   .c 752 to 3338 16 to 2610   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 2593/2610
(99 %)
13 diff
(99.6 %id)
BG747645 eye, normal pigmented retinal epithelium .c 1455 to 2161 724 to 2     Submitted on the opposite strand 723/743
(97 %)
29 diff
(96.1 %id)
BX115665 melanocyte .c 1754 to 2434 1 to 681   tiling clone,   681/681
(100 %)
3 diff
(99.6 %id)
N23576 melanocyte .c 1798 to 2260 1 to 464       464/466
(99 %)
6 diff
(98.8 %id)
BQ267203 insulinoma, Pancreas .c 1836 to 2353 7 to 524     Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 518/524
(98 %)
7 diff
(98.7 %id)
BQ272459 insulinoma, Pancreas .c 2835 to 3340 521 to 16   tiling clone, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 506/506
(100 %)
1 diff
(99.9 %id)
H98854 melanocyte .c 2928 to 3335 411 to 4   tiling clone,   408/411
(99 %)
0 diff
(100 %id)
NM_001008225.2   .d 1 to 3773 2 to 3774 exact RefSeq,   3774/3774
(100 %)
0 diff
(100 %id)
NM_001190848.1   .d 1 to 3773 2 to 3783 S271R P272Y I273D D274T K275P ... RefSeq,   3783/3783
(100 %)
1 diff
(100.0 %id)
W39207 parathyroid gland, parathyroid tumor .d 43 to 468 1 to 429   tiling clone,   429/429
(100 %)
6 diff
(98.7 %id)
AL389980   .d 46 to 2831 1 to 2786 A7G tiling clone, AAA   2786/2786
(100 %)
1 diff
(100.0 %id)
U71268   .d 50 to 2180 1 to 2140 S271R P272Y I273D D274T K275P ... tiling clone,   2140/2140
(100 %)
6 diff
(99.8 %id)
W15210 parathyroid gland, parathyroid tumor .d 1711 to 2180 483 to 13   AAA   471/471
(100 %)
6 diff
(98.8 %id)
DN991670 brain, whole brain .e 1 to 661 9 to 669   tiling clone,   661/669
(98 %)
6 diff
(99.2 %id)
AW779673 Kidney .e 46 to 526 480 to 1       480/480
(100 %)
1 diff
(99.8 %id)
AF180475   .e 275 to 1938 1 to 1673 S271R P272Y I273D D274T K275P ... tiling clone, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 1673/1673
(100 %)
2 diff
(99.9 %id)
DW426915 Liver .f 1 to 264 17 to 280   tiling clone,   264/280
(94 %)
6 diff
(97.9 %id)
DW427224 Liver .f 1 to 261 17 to 279       263/279
(94 %)
6 diff
(97.9 %id)
BP363466 lung .f 243 to 822 1 to 582 N44S Q177A A178G K180* tiling clone,   582/582
(100 %)
5 diff
(99.2 %id)
DA710036   .g 1 to 533 2 to 535   tiling clone, capped   534/534
(100 %)
3 diff
(99.5 %id)
BX478126   .g 48 to 749 1 to 702   tiling clone,   702/706
(99 %)
7 diff
(99.1 %id)
BE842690 stomach .g 105 to 763 673 to 12 N30Y S147* tiling clone,   662/674
(98 %)
9 diff
(98.7 %id)
BE154510 head_neck .h 1 to 272 1 to 272   tiling clone,   272/272
(100 %)
0 diff
(100 %id)
CV574193 cornea, eye .h 203 to 803 1 to 604 K2E E3R W4M Q5A D6R ... tiling clone,   604/604
(100 %)
23 diff
(96.2 %id)
BF247573 hypernephroma, Kidney .h 426 to 483 1 to 57       716/879
(81 %)
67 diff
(92.4 %id)
AW182334 pooled .i-u 1 to 705 706 to 1 D2T D9R V10C T11H R12S ... tiling clone,   706/706
(100 %)
11 diff
(98.5 %id)
AW511050 pooled .i-u 88 to 705 616 to 1   tiling clone,   616/616
(100 %)
5 diff
(99.2 %id)
DA533962 brain .j 1 to 577 2 to 578 exact tiling clone, capped   577/577
(100 %)
0 diff
(100 %id)
DB073173 testis .k 1 to 538 2 to 539 exact tiling clone, capped   538/538
(100 %)
0 diff
(100 %id)
BG398713 Kidney .l-u 1 to 618 1 to 616 G6A C7A C8A C9A S10H ... tiling clone,   616/618
(99 %)
20 diff
(96.8 %id)
AI797843 B-cell, chronic lymphotic leukemia .l-u 377 to 946 569 to 1   tiling clone,   569/569
(100 %)
2 diff
(99.7 %id)
BG702481 brain, hippocampus .m 1 to 642 5 to 652 K53N G54R tiling clone,   652/860
(75 %)
10 diff
(98.9 %id)
BG723574 testis .m 1 to 676 2 to 683 F17L N45K tiling clone,   683/820
(83 %)
22 diff
(97.4 %id)
DA335167 hippocampus .m 14 to 609 2 to 600 exact capped   599/599
(100 %)
2 diff
(99.7 %id)
DA325745 hippocampus .m 17 to 581 2 to 567 exact capped   566/566
(100 %)
1 diff
(99.9 %id)
DA325768 hippocampus .m 17 to 587 2 to 572 exact capped   571/571
(100 %)
0 diff
(100 %id)
DA406428 thalamus .m 17 to 561 2 to 546 exact capped   545/553
(98 %)
2 diff
(99.7 %id)
DA501196 brain .m 17 to 520 2 to 505   capped   504/504
(100 %)
1 diff
(99.9 %id)
DA804032 brain .m 17 to 560 2 to 546 exact capped   545/545
(100 %)
1 diff
(99.9 %id)
DA816983   .m 17 to 585 2 to 570 exact capped   569/569
(100 %)
1 diff
(99.9 %id)
DA999430 breast, tumor tissue .m 17 to 551 2 to 537 exact capped   536/536
(100 %)
1 diff
(99.9 %id)
DB081145 testis .m 17 to 520 2 to 505   capped   504/504
(100 %)
0 diff
(100 %id)
DB089476 testis .m 17 to 570 2 to 554 S6P A8H P9L V10W A11L ... capped   553/553
(100 %)
1 diff
(99.9 %id)
DB140349 thymus .m 17 to 485 2 to 470   capped   469/469
(100 %)
0 diff
(100 %id)
DA039041 bladder .m 20 to 574 2 to 556 exact capped   555/555
(100 %)
0 diff
(100 %id)
DA242610 brain .m 20 to 604 2 to 586 exact tiling clone, capped   585/585
(100 %)
1 diff
(99.9 %id)
DA810424 brain .m 20 to 575 2 to 559 exact capped   558/558
(100 %)
3 diff
(99.5 %id)
DA885031   .m 20 to 543 2 to 525 exact capped   524/524
(100 %)
0 diff
(100 %id)
DB088204 testis .m 22 to 569 2 to 550 exact capped   549/549
(100 %)
1 diff
(99.9 %id)
AW451626   .m 23 to 557 550 to 16 exact AAA   535/550
(97 %)
1 diff
(99.9 %id)
BM458336 lymph, lymphoma, cell line .m 23 to 679 40 to 703 Q38P K53Q tiling clone,   664/1185
(56 %)
16 diff
(98.7 %id)
TI_154154345   .m 36 to 679 82 to 723 exact     642/654
(98 %)
17 diff
(97.5 %id)
BE885113.
matches multiple genes
leiomyosarcoma, uterus, Uterus, leiomyosarcoma .m 47 to 679 1 to 646 E34R S35K H36P I37Y Q38P ... available from MGC, also hits gene GTPBP1 646/959
(67 %)
9 diff
(99.1 %id)
BM694746 eye, RPE and Choroid .m 53 to 541 1 to 489 K53X     489/490
(99 %)
2 diff
(99.6 %id)
BE501144 pooled germ cell tumors .m 79 to 554 477 to 2 exact     476/477
(99 %)
1 diff
(99.8 %id)
AI570510 anaplastic oligodendroglioma, brain .m 80 to 538 476 to 18   AAA   459/459
(100 %)
0 diff
(100 %id)
AI917353 pooled germ cell tumors .m 80 to 554 476 to 2 exact     475/476
(99 %)
1 diff
(99.8 %id)
AW298390   .m 82 to 565 484 to 2 exact     483/484
(99 %)
1 diff
(99.8 %id)
AW149837 brain, medulloblastoma .m 84 to 565 482 to 1 exact     482/482
(100 %)
3 diff
(99.4 %id)
DB071523 testis .n 1 to 555 2 to 557 exact tiling clone, capped   556/556
(100 %)
1 diff
(99.9 %id)
BE891214 melanotic melanoma, skin .o-u 1 to 470 176 to 665 S2V R3S S4T P5V D6L ... tiling clone,   497/922
(53 %)
6 diff
(99.4 %id)
AA337424 endometrium Gene CNOT4, variant not shown              
AA337514 endometrium Gene CNOT4, variant not shown              
AA354013   Gene CNOT4, variant not shown              
AK055985   Gene CNOT4, variant not shown       available from FLJ,      
AK074493 whole embryo, mainly head Gene CNOT4, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AW960779   Gene CNOT4, variant not shown       AAA      
BG942861 blood Gene CNOT4, variant not shown              
BC035590 Testis, embryonal carcinoma Gene CNOT4, variant not shown       available from MGC, AAA      
BG195211   Gene CNOT4, variant not shown         Suspected internal deletion, this clone was ignored    
BI047833 stomach Gene CNOT4, variant not shown              
DB299894 cerebellum Gene CNOT4, variant not shown         This clone was ignored    
DA111367 cerebellum Gene CNOT4, variant not shown       capped This clone was ignored    
DA203987 brain Gene CNOT4, variant not shown       capped      
DB308755 hippocampus Gene CNOT4, variant not shown              
DA315643 hippocampus Gene CNOT4, variant not shown       capped      
DB311745 thalamus Gene CNOT4, variant not shown         This clone was ignored    
DA389368 thalamus Gene CNOT4, variant not shown       capped This clone was ignored    
DA403265 thalamus Gene CNOT4, variant not shown       capped      
BU656803 blood Gene CNOT4, variant not shown              
CR596624 Neuroblastoma Cot 50-normalized Gene CNOT4, variant not shown              
AL529761 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized Gene CNOT4, variant not shown       fully sequenced,      
AL563542 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized Gene CNOT4, variant not shown       fully sequenced,      
BX329830 Neuroblastoma Cot 50-normalized Gene CNOT4, variant not shown         This clone was ignored    
BX334079 Neuroblastoma Cot 50-normalized Gene CNOT4, variant not shown         This clone was ignored    
DB314347 tongue, tumor tissue Gene CNOT4, variant not shown         This clone was ignored    
DA455361 tongue, tumor tissue Gene CNOT4, variant not shown       capped This clone was ignored    
CV370089 nervous_normal Gene CNOT4, variant not shown         Submitted on the opposite strand    
BX503894   Gene CNOT4, variant not shown              
BX472361   Gene CNOT4, variant not shown              
BX498211 Liver Gene CNOT4, variant not shown              
EH346028   Gene CNOT4, variant not shown              
EH351678   Gene CNOT4, variant not shown              
DA499461 brain Gene CNOT4, variant not shown       capped      
DB516288 testis Gene CNOT4, variant not shown         Submitted on the opposite strand    
DB528824 hippocampus Gene CNOT4, variant not shown         Submitted on the opposite strand    
DB537386 hippocampus Gene CNOT4, variant not shown         Submitted on the opposite strand    
DB550820 hippocampus Gene CNOT4, variant not shown         Submitted on the opposite strand    
DB354704 whole embryo, mainly head Gene CNOT4, variant not shown         This clone was ignored    
DA568220 whole embryo, mainly head Gene CNOT4, variant not shown       capped This clone was ignored    
DB357211 whole embryo, mainly head Gene CNOT4, variant not shown              
DA570446 whole embryo, mainly head Gene CNOT4, variant not shown       capped, AAA      
R64001 placenta Gene CNOT4, variant not shown              
H52048 liver and spleen Gene CNOT4, variant not shown         Submitted on the opposite strand    
N24161 melanocyte Gene CNOT4, variant not shown              
N36195 melanocyte Gene CNOT4, variant not shown              
N63670 liver and spleen Gene CNOT4, variant not shown         Submitted on the opposite strand    
AI336151 lung Gene CNOT4, variant not shown              
AI269845 adenocarcinoma, Pancreas Gene CNOT4, variant not shown              
AI307770 2 pooled tumors (clear cell type), Kidney Gene CNOT4, variant not shown         Suspected internal deletion, this clone was ignored    
AI393436 pooled Gene CNOT4, variant not shown              
AI808136 pooled Gene CNOT4, variant not shown              
AI769372 2 pooled tumors (clear cell type), Kidney Gene CNOT4, variant not shown         Suspected internal deletion, this clone was ignored    
AI826419 normal prostate, Prostate Gene CNOT4, variant not shown       AAA      
BE222867 brain, oligodendroglioma Gene CNOT4, variant not shown              
BF433015 carcinoid, lung Gene CNOT4, variant not shown         Submitted on the opposite strand    
BE888595 leiomyosarcoma, uterus Gene CNOT4, variant not shown              
BU187957 testis Gene CNOT4, variant not shown              
CA771248 Pancreas, Purified pancreatic islet Gene CNOT4, variant not shown         Submitted on the opposite strand    
BQ441020 melanotic melanoma, skin Gene CNOT4, variant not shown              
CB984903 Pooled-Glandular Gene CNOT4, variant not shown              
DB322759   Gene CNOT4, variant not shown              
DA683224   Gene CNOT4, variant not shown       capped      
BM151300 leukopheresis Gene CNOT4, variant not shown       AAA      
DB135708 thymus Gene CNOT4, variant not shown       capped      
DB344977 thymus Gene CNOT4, variant not shown              
DB136300 thymus Gene CNOT4, variant not shown       capped This clone was ignored    
DB345020 thymus Gene CNOT4, variant not shown         This clone was ignored    
TI_149296013   Gene CNOT4, variant not shown       AAA      
DB221772 trachea Gene CNOT4, variant not shown       capped      
DB349447 trachea Gene CNOT4, variant not shown              
BP373576 umbilical cord Gene CNOT4, variant not shown         Suspected internal deletion, this clone was ignored    
BU684070 lung, Primary Lung Cystic Fibrosis EpithelialCells Gene CNOT4, variant not shown       AAA      
BM929368 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene CNOT4, variant not shown       AAA      
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j, .k, .l-u, .m, .n, .o-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI