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Gene CLSTN2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
73 supporting clones for gene CLSTN2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK315308 uterus .a 1 to 3057 2 to 3058 exact tiling clone,   3058/3058
(100 %)
3 diff
(100.0 %id)
NM_022131.2   .a 1 to 4881 2 to 4882 exact RefSeq,   4882/4882
(100 %)
0 diff
(100 %id)
DA528988 brain .a 1 to 602 2 to 603   capped   602/602
(100 %)
0 diff
(100 %id)
DA532502 brain .a 1 to 492 2 to 493   capped   492/492
(100 %)
0 diff
(100 %id)
DB285129 uterus .a 1 to 355 2 to 356   capped   355/355
(100 %)
0 diff
(100 %id)
AJ278018 brain .a 297 to 4600 118 to 4421   tiling clone,   4304/4421
(97 %)
8 diff
(99.9 %id)
AY753303   .a 297 to 3057 108 to 2868       2761/2868
(96 %)
8 diff
(99.8 %id)
BC103496 PCR rescued clones .a 297 to 3116 118 to 2937       2820/2937
(96 %)
11 diff
(99.7 %id)
BC103506 PCR rescued clones .a 297 to 3116 117 to 2936   tiling clone,   2820/2936
(96 %)
11 diff
(99.7 %id)
BC104485 PCR rescued clones .a 297 to 3116 115 to 2934       2820/2934
(96 %)
8 diff
(99.8 %id)
BP310631 brain .a 297 to 769 112 to 584       473/584
(80 %)
6 diff
(99.0 %id)
DA334951 hippocampus .a 319 to 901 2 to 584   capped   583/583
(100 %)
6 diff
(99.0 %id)
BC128544 PCR rescued clones .a 343 to 1989 1660 to 14     Submitted on the opposite strand 1647/1661
(99 %)
6 diff
(99.7 %id)
BF946688 nervous_normal .a 654 to 1017 1 to 363       363/363
(100 %)
2 diff
(99.5 %id)
CN309712 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 817 to 1401 1 to 585       585/585
(100 %)
4 diff
(99.4 %id)
DA334629 hippocampus .a 866 to 1434 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DA245266 brain .a 966 to 1538 5 to 577   capped   573/585
(97 %)
10 diff
(98.3 %id)
DB275927 uterus .a 985 to 1566 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
AK056411   .a 1362 to 4879 1 to 3518   available from FLJ,   3518/3518
(100 %)
5 diff
(99.9 %id)
DA739211   .a 1363 to 1924 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB083625 testis .a 1438 to 1994 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BX952320   .a 1584 to 2101 1 to 518       518/518
(100 %)
2 diff
(99.7 %id)
DA188776 amygdala .a 1594 to 2146 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA723555   .a 1924 to 2499 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
BE797647 lung, small cell carcinoma .a 2336 to 2948 7 to 619   available from MGC,   613/619
(99 %)
13 diff
(97.9 %id)
BC004871 Lung, small cell carcinoma .a 2342 to 4879 1 to 2542   tiling clone, available from MGC, AAA   2542/2542
(100 %)
7 diff
(99.8 %id)
BC007943 Brain, neuroblastoma .a 2553 to 4875 1 to 2327   available from MGC, AAA   2327/2327
(100 %)
6 diff
(99.8 %id)
AK096818 Prostate .a 2665 to 4875 1 to 2211   available from FLJ,   2211/2211
(100 %)
3 diff
(99.9 %id)
DA878110 Prostate .a 2666 to 3235 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
Z43782 brain, total brain .a 2967 to 3141 1 to 179       179/179
(100 %)
7 diff
(96.1 %id)
R18371 whole brain .a 2974 to 3299 1 to 333       333/335
(99 %)
12 diff
(96.5 %id)
T71424 Liver .a 3109 to 3435 1 to 334       334/402
(83 %)
16 diff
(96.1 %id)
BQ878466 dorsal root ganglia .a 3222 to 4005 1 to 785       785/1017
(77 %)
5 diff
(99.6 %id)
BE065553 breast .a 3526 to 3750 9 to 237       229/237
(96 %)
6 diff
(97.5 %id)
CN309713 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 3586 to 4232 1 to 652       652/652
(100 %)
5 diff
(99.3 %id)
BI007501 kidney_tumor .a 3611 to 3748 140 to 1       140/140
(100 %)
7 diff
(95.0 %id)
AA377567 synovial membrane .a 3655 to 3901 1 to 247       247/247
(100 %)
1 diff
(99.6 %id)
BU538210 adenocarcinoma, cell line, breast .a 3930 to 4871 944 to 1     Submitted on the opposite strand 944/944
(100 %)
13 diff
(98.7 %id)
BU538204 adenocarcinoma, cell line, breast .a 3959 to 4871 932 to 1     Submitted on the opposite strand 932/972
(95 %)
37 diff
(96.2 %id)
BU857940 adenocarcinoma, cell line, breast .a 3970 to 4871 913 to 1     Submitted on the opposite strand 913/918
(99 %)
16 diff
(98.3 %id)
BU857962 adenocarcinoma, cell line, breast .a 3970 to 4871 912 to 1     Submitted on the opposite strand 912/917
(99 %)
17 diff
(98.2 %id)
BU538245 adenocarcinoma, cell line, breast .a 3974 to 4871 900 to 1     Submitted on the opposite strand 900/900
(100 %)
12 diff
(98.7 %id)
TI_151755696   .a 4005 to 4847 964 to 133       832/992
(83 %)
22 diff
(97.8 %id)
D60359   .a 4111 to 4471 1 to 360       360/360
(100 %)
1 diff
(99.8 %id)
D60385   .a 4111 to 4461 1 to 347       347/348
(99 %)
5 diff
(98.6 %id)
BE076970 breast .a 4153 to 4550 413 to 16     Submitted on the opposite strand 398/429
(92 %)
0 diff
(100 %id)
DB330225 Prostate .a 4347 to 4875 530 to 1       530/530
(100 %)
1 diff
(99.9 %id)
DB324610   .a 4366 to 4879 514 to 1       514/514
(100 %)
1 diff
(99.9 %id)
T71286 Liver .a 4400 to 4878 487 to 1       487/487
(100 %)
12 diff
(97.6 %id)
Z39848 brain, total brain .a 4608 to 4879 272 to 1       272/272
(100 %)
0 diff
(100 %id)
AK096432 tongue .b 1 to 2406 2 to 2407 exact tiling clone, available from FLJ,   2407/2407
(100 %)
4 diff
(99.9 %id)
DA765156 tongue .b 1 to 566 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DB325445 tongue .b 1863 to 2406 545 to 1       545/558
(97 %)
2 diff
(99.7 %id)
BP249987 hippocampus .c 1 to 585 1 to 587 Q161R G166D K187X D188G V189C ... tiling clone,   587/587
(100 %)
4 diff
(99.4 %id)
DA724988   .d 1 to 554 2 to 555 V90I tiling clone, capped   554/554
(100 %)
2 diff
(99.7 %id)
DA213680 brain .e-u 1 to 550 2 to 551 exact tiling clone, capped   550/550
(100 %)
0 diff
(100 %id)
AW467121 2 pooled tumors (clear cell type), Kidney .e-u 41 to 568 539 to 12 exact AAA   528/528
(100 %)
3 diff
(99.5 %id)
BX116606 whole brain .e-u 71 to 572 517 to 16 exact AAA   502/502
(100 %)
4 diff
(99.3 %id)
AI672475 Kidney .e-u 92 to 570 493 to 15 L6M M9K L18I AAA   479/479
(100 %)
16 diff
(96.7 %id)
AA365099 pineal body .e-u 120 to 321 1 to 202 S2X     202/204
(99 %)
1 diff
(99.6 %id)
AW953955   .e-u 121 to 570 1 to 450 exact AAA   450/450
(100 %)
0 diff
(100 %id)
BQ189429 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e-u 126 to 576 1 to 451 exact tiling clone, AAA   451/451
(100 %)
0 diff
(100 %id)
TI_151731718   .e-u 126 to 574 528 to 80 A30G AAA   449/974
(46 %)
1 diff
(99.9 %id)
AI885819 anaplastic oligodendroglioma, brain .e-u 146 to 574 429 to 1 exact     429/429
(100 %)
0 diff
(100 %id)
AI023598   .e-u 149 to 576 429 to 2 exact     428/429
(99 %)
0 diff
(100 %id)
AA758386 pineal gland .e-u 183 to 576 396 to 4       393/396
(99 %)
0 diff
(100 %id)
AI001193 breast .e-u 183 to 539 397 to 41       357/397
(89 %)
0 diff
(100 %id)
AI253363 brain, hippocampus (see description) .e-u 257 to 576 363 to 44       320/363
(88 %)
0 diff
(100 %id)
AA630036 lung, lung carcinoma .e-u 278 to 543 266 to 1       266/266
(100 %)
0 diff
(100 %id)
AW206575   .e-u 312 to 574 280 to 18   AAA   263/272
(96 %)
0 diff
(100 %id)
AI401746 Prostate .e-u 346 to 574 229 to 1       229/229
(100 %)
0 diff
(100 %id)
AI826624 normal prostate, Prostate .e-u 346 to 574 229 to 1       229/229
(100 %)
3 diff
(98.7 %id)
BF222289 Prostate .e-u 346 to 574 229 to 1       229/229
(100 %)
0 diff
(100 %id)
FN121244 breast carcinoma .e-u 347 to 429 1 to 85       85/86
(98 %)
5 diff
(94.2 %id)
AI540525 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .e-u 387 to 574 201 to 14   AAA   188/191
(98 %)
3 diff
(98.5 %id)
BF177293 blood .g-u 1 to 234 1 to 230 T25N L26P N27P S28T Y29L ... tiling clone,   230/230
(100 %)
22 diff
(90.5 %id)
BQ311828 breast_normal Gene CLSTN2, variant not shown              
BF115546 fibrotheoma, ovary Gene CLSTN2, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f-u, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C