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Gene CLIC2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
210 supporting clones for gene CLIC2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AA368571.
matches multiple genes
placenta .a 1 to 311 1 to 313   tiling clone, also hits gene skeyva 313/313
(100 %)
3 diff
(99.1 %id)
AW500770 lymph .a 306 to 764 8 to 466       459/466
(98 %)
6 diff
(98.8 %id)
TI_154155042   .a 306 to 857 80 to 631   tiling clone,   552/552
(100 %)
0 diff
(100 %id)
DA977247 synovial membrane tissue from rheumatioidarthritis .a 808 to 1380 2 to 575   tiling clone, capped   574/574
(100 %)
1 diff
(99.9 %id)
FN128855 breast carcinoma .a 882 to 978 1 to 95       95/95
(100 %)
2 diff
(97.9 %id)
DA901964   .a 942 to 1494 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
BP259932 heart .a 944 to 1417 10 to 486       477/550
(86 %)
22 diff
(96.0 %id)
DA277112 corpus callosum .a 945 to 1514 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
BX482109   .a 945 to 1491 1 to 547       547/560
(97 %)
3 diff
(99.5 %id)
NM_001289.4   .a 945 to 3628 1 to 2684 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 2684/2684
(100 %)
0 diff
(100 %id)
DB265084 uterus .a 945 to 1531 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
BM546194 ovary (pool of 3) .a 957 to 1777 17 to 855   tiling clone,   837/1006
(83 %)
38 diff
(96.3 %id)
BG527956 lung, mucoepidermoid carcinoma .a 961 to 1592 1 to 633       633/839
(75 %)
13 diff
(98.5 %id)
CD696566 normal nasopharynx .a 972 to 1418 15 to 461       447/461
(96 %)
7 diff
(98.5 %id)
DA477475   .a 974 to 1491 2 to 519   capped   518/530
(97 %)
3 diff
(99.5 %id)
BM955579 tonsil .a 974 to 1487 1 to 514       514/514
(100 %)
9 diff
(98.3 %id)
DB104821 thymus .a 974 to 1534 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
Y12696   .a 974 to 2191 1 to 1219 E164G K244* AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 1219/1219
(100 %)
3 diff
(99.8 %id)
BU659027 blood .a 979 to 1476 12 to 509       498/509
(97 %)
6 diff
(98.9 %id)
DN992185 brain, whole brain .a 979 to 1675 9 to 705       697/705
(98 %)
0 diff
(100 %id)
DA360910 subthalamic nucleus .a 980 to 1531 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
BP379997 uterus .a 988 to 1557 1 to 570       570/570
(100 %)
1 diff
(99.9 %id)
W19686 parathyroid gland, parathyroid tumor .a 991 to 1403 1 to 413     Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 413/413
(100 %)
2 diff
(99.6 %id)
W19890 parathyroid gland, parathyroid tumor .a 991 to 1582 1 to 587     Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 587/658
(89 %)
16 diff
(97.6 %id)
CD700998 normal nasopharynx .a 994 to 1491 39 to 536       498/546
(91 %)
8 diff
(98.6 %id)
AU100227   .a 998 to 1297 1 to 300       300/300
(100 %)
2 diff
(99.4 %id)
BP380617   .a 999 to 1426 1 to 428       428/428
(100 %)
1 diff
(99.8 %id)
BF184897 bone marrow, from chronic myelogenous leukemia .a 1007 to 1698 1 to 683       683/764
(89 %)
18 diff
(97.7 %id)
DB204176 trachea .a 1007 to 1590 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
AK292785 trachea .a 1008 to 2674 1 to 1667 exact tiling clone,   1667/1667
(100 %)
1 diff
(100.0 %id)
CD697859 normal nasopharynx .a 1009 to 1448 38 to 477       440/477
(92 %)
6 diff
(98.8 %id)
DA428503 colon .a 1009 to 1570 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA681224 ovary .a 1009 to 1576 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA894949 skeletal muscle .a 1009 to 1554 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DA947495 Spleen .a 1009 to 1591 2 to 585   capped   584/584
(100 %)
2 diff
(99.7 %id)
DB195838 trachea .a 1009 to 1536 2 to 529   capped   528/528
(100 %)
1 diff
(99.9 %id)
DB204090 trachea .a 1009 to 1592 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DB206948 trachea .a 1009 to 1551 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
CB269368 adipose .a 1010 to 1359 1 to 349       349/358
(97 %)
3 diff
(99.2 %id)
AA100322 muscle, skeletal muscle .a 1010 to 1437 1 to 432       432/432
(100 %)
7 diff
(98.4 %id)
DA950948 Spleen .a 1012 to 1580 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DB200532 trachea .a 1012 to 1491 2 to 481   capped   480/492
(97 %)
2 diff
(99.6 %id)
X97509 liver and spleen .a 1015 to 1302 13 to 300       288/300
(96 %)
6 diff
(98.0 %id)
CD697608 normal nasopharynx .a 1016 to 1320 16 to 320       305/320
(95 %)
6 diff
(98.2 %id)
CB047708 Kidney .a 1017 to 1414 5 to 402     Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 398/402
(99 %)
6 diff
(98.6 %id)
BU657645 blood .a 1021 to 1545 12 to 536       525/536
(97 %)
6 diff
(98.9 %id)
DR422866 eye, Pterygium .a 1027 to 1720 1 to 694       694/694
(100 %)
1 diff
(99.9 %id)
DA953316 Spleen .a 1032 to 1586 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
T73274 Liver .a 1034 to 1340 7 to 315       309/344
(89 %)
9 diff
(97.4 %id)
BU662750 blood .a 1041 to 1693 1 to 653       653/653
(100 %)
0 diff
(100 %id)
BI710817 insulinoma, Pancreas .a 1056 to 1619 3 to 566       564/567
(99 %)
7 diff
(98.8 %id)
BU947448 insulinoma, Pancreas .a 1056 to 1668 3 to 615       613/615
(99 %)
6 diff
(99.1 %id)
BU657876 blood .a 1060 to 1534 1 to 475       475/475
(100 %)
7 diff
(98.6 %id)
BM955580 tonsil .a 1060 to 1438 1 to 379       379/379
(100 %)
4 diff
(99.0 %id)
DA562308 heart .a 1062 to 1644 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
BU658985 blood .a 1063 to 1545 1 to 483       483/483
(100 %)
0 diff
(100 %id)
BU661461 blood .a 1064 to 1749 12 to 697       686/697
(98 %)
6 diff
(99.2 %id)
BG534703 lung .a 1064 to 1698 1 to 637       637/639
(99 %)
8 diff
(98.8 %id)
BC022305 lung .a 1065 to 2638 1 to 1574 exact available from MGC, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 1574/1575
(99 %)
3 diff
(99.9 %id)
BU658587 blood .a 1065 to 1547 11 to 493       483/493
(97 %)
6 diff
(98.8 %id)
BC005367 Lung, mucoepidermoid carcinoma .a 1065 to 2672 1 to 1608 Q9* tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 1608/1610
(99 %)
2 diff
(99.9 %id)
DB209598 trachea .a 1065 to 1630 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DB018677 esophageal, tumor tissue .a 1066 to 1624 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
CD611182   .a 1080 to 1670 1 to 591       591/597
(98 %)
7 diff
(98.9 %id)
CD611183   .a 1084 to 1670 586 to 4       583/590
(98 %)
6 diff
(99.0 %id)
BF132381 lung, mucoepidermoid carcinoma .a 1084 to 1722 1 to 629   available from MGC,   629/693
(90 %)
21 diff
(97.0 %id)
BI521489 pooled pancreas and spleen .a 1085 to 1949 1 to 873 F17L V18*     873/873
(100 %)
23 diff
(97.4 %id)
TI_227714698   .a 1087 to 2106 1107 to 103 S2A G3A L4P R5A P6L ... AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 1005/1013
(99 %)
35 diff
(96.6 %id)
AA298877 Pancreas .a 1108 to 1386 1 to 279       279/279
(100 %)
7 diff
(97.5 %id)
AW959235   .a 1115 to 1696 7 to 593       586/593
(98 %)
18 diff
(97.0 %id)
BG496268 lung, mucoepidermoid carcinoma .a 1168 to 1729 1 to 598       596/940
(63 %)
51 diff
(94.6 %id)
TI_1948220762   .a 1194 to 1937 137 to 882   fully sequenced,   746/882
(84 %)
14 diff
(98.5 %id)
TI_1948220931   .a 1194 to 1945 142 to 895 I235N E236* fully sequenced,   754/895
(84 %)
14 diff
(98.5 %id)
TI_1948221104   .a 1194 to 1450 139 to 394       256/284
(90 %)
6 diff
(97.9 %id)
TI_1948221272   .a 1194 to 1940 140 to 889 K189N I205L A207Q E208N F209S ... fully sequenced,   750/889
(84 %)
26 diff
(97.1 %id)
EL735455 mixed .a 1195 to 1778 1 to 584       584/602
(97 %)
5 diff
(99.2 %id)
AI129485 uterus .a 1297 to 2107 813 to 3       811/813
(99 %)
20 diff
(97.6 %id)
DB014344 esophageal, tumor tissue .a 1334 to 1889 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
BQ894644 dorsal root ganglia .a 1340 to 2232 1 to 896       896/896
(100 %)
6 diff
(99.4 %id)
AI621088 pooled germ cell tumors .a 1353 to 2106 735 to 1       735/794
(92 %)
32 diff
(96.0 %id)
CD365335 Alveolar Macrophage, lung .a 1385 to 2106 740 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 722/722
(100 %)
0 diff
(100 %id)
TI_1948220763   .a 1457 to 1937 607 to 127   fully sequenced,   481/607
(79 %)
0 diff
(100 %id)
TI_1948220932   .a 1457 to 1937 605 to 125   fully sequenced,   481/605
(79 %)
0 diff
(100 %id)
TI_1948221273   .a 1457 to 1937 604 to 124   fully sequenced,   481/604
(79 %)
0 diff
(100 %id)
BG201087   .a 1490 to 2250 1 to 760       760/784
(96 %)
21 diff
(97.4 %id)
BG215815   .a 1490 to 2277 1 to 779       779/781
(99 %)
27 diff
(96.6 %id)
BM955582 tonsil .a 1492 to 1952 1 to 462       462/462
(100 %)
2 diff
(99.6 %id)
CB053586 leiomyosarcoma, soft tissue .a 1528 to 1960 10 to 442   fully sequenced,   433/442
(97 %)
13 diff
(97.1 %id)
AA297954 Prostate .a 1533 to 1850 1 to 319       319/319
(100 %)
1 diff
(99.7 %id)
AW958850   .a 1534 to 2186 1 to 650       650/652
(99 %)
20 diff
(97.0 %id)
BG201592   .a 1589 to 2428 11 to 850       846/851
(99 %)
54 diff
(93.7 %id)
BG186102   .a 1595 to 2323 1 to 733       733/755
(97 %)
24 diff
(96.9 %id)
AI200122 placenta .a 1624 to 2107 496 to 13       484/496
(97 %)
6 diff
(98.8 %id)
AW972548   .a 1634 to 2237 602 to 1     Submitted on the opposite strand 602/606
(99 %)
9 diff
(98.6 %id)
BX119152 parathyroid gland, parathyroid tumor .a 1644 to 2356 1 to 713       713/713
(100 %)
1 diff
(99.9 %id)
BQ013124 placenta .a 1661 to 2106 464 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 446/446
(100 %)
0 diff
(100 %id)
BG944345 blood .a 1665 to 2105 475 to 35   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 441/441
(100 %)
3 diff
(99.4 %id)
FN164270 breast carcinoma .a 1667 to 1767 1 to 102       102/102
(100 %)
4 diff
(96.1 %id)
AI633242 pooled germ cell tumors .a 1693 to 2107 417 to 3       415/417
(99 %)
0 diff
(100 %id)
TI_1948221105   .a 1718 to 1937 343 to 124       220/247
(89 %)
0 diff
(100 %id)
BM955578 tonsil .a 1727 to 2275 1 to 549       549/549
(100 %)
0 diff
(100 %id)
AI311800 2 pooled tumors (clear cell type), Kidney .a 1744 to 2193 452 to 3       450/452
(99 %)
1 diff
(99.8 %id)
AI493099 Kidney .a 1750 to 2193 455 to 12       444/455
(97 %)
0 diff
(100 %id)
CB047707 Kidney .a 1924 to 2607 710 to 26   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 685/685
(100 %)
1 diff
(99.9 %id)
CB053585 leiomyosarcoma, soft tissue .a 1930 to 2625 696 to 3   fully sequenced,   694/696
(99 %)
10 diff
(98.6 %id)
N91237 parathyroid gland, parathyroid tumor .a 1952 to 2191 252 to 11   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 242/289
(83 %)
10 diff
(96.6 %id)
N90032 parathyroid gland, parathyroid tumor .a 1996 to 2191 206 to 11   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 196/198
(98 %)
0 diff
(100 %id)
BI769699 pooled lung and spleen .b 1 to 977 1 to 970 F17L V18* tiling clone,   970/1060
(91 %)
44 diff
(95.9 %id)
TI_57179863   .b 1 to 977 31 to 1000 F17L V18*     970/1090
(88 %)
47 diff
(95.7 %id)
AW591790 lymph node, lymphoma, follicular mixed small and largecell .b 818 to 1148 334 to 1       334/372
(89 %)
3 diff
(99.2 %id)
FN131037 breast carcinoma .b 837 to 938 1 to 102   tiling clone,   102/102
(100 %)
0 diff
(100 %id)
AA505884 breast .b 846 to 1279 436 to 1       436/436
(100 %)
2 diff
(99.6 %id)
BU621971 Cell Line, Chondrosarcoma .b 894 to 1643 760 to 12   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 749/749
(100 %)
2 diff
(99.8 %id)
TI_57218795   .b 918 to 1641 63 to 788   tiling clone,   726/930
(78 %)
13 diff
(98.7 %id)
BI755485 brain .b 924 to 1641 1 to 720       720/756
(95 %)
9 diff
(98.9 %id)
BE876853 large cell carcinoma, undifferentiated, lung .b 933 to 1715 1 to 773   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 773/773
(100 %)
16 diff
(98.0 %id)
BG209495   .b 941 to 1703 771 to 13     Submitted on the opposite strand 759/916
(82 %)
0 diff
(100 %id)
CA429009 Cell Line, Chondrosarcoma .b 965 to 1643 690 to 12   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 679/679
(100 %)
3 diff
(99.6 %id)
TI_149281646   .b 1028 to 1663 770 to 133   AAA   638/933
(68 %)
0 diff
(100 %id)
CD638939 pooled .b 1033 to 1701 1 to 665       665/669
(99 %)
9 diff
(98.7 %id)
BE567022 bladder, carcinoma, cell line .b 1038 to 1654 1 to 615       615/616
(99 %)
17 diff
(97.3 %id)
BG203671   .b 1042 to 1702 675 to 18     Submitted on the opposite strand 658/842
(78 %)
0 diff
(100 %id)
BI711147 insulinoma, Pancreas .b 1095 to 1643 560 to 16   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 545/545
(100 %)
2 diff
(99.7 %id)
AA843327 parathyroid gland, parathyroid tumor .b 1157 to 1645 494 to 6       489/494
(98 %)
0 diff
(100 %id)
BQ717000 sympathetic trunk .b 1167 to 2070 1 to 913   tiling clone,   913/915
(99 %)
30 diff
(96.8 %id)
BG944150 blood .b 1172 to 1636 495 to 31   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 465/465
(100 %)
0 diff
(100 %id)
BP386509 pancreatic islet .b 1172 to 1643 1 to 472     Submitted on the opposite strand 472/472
(100 %)
0 diff
(100 %id)
AI471491 follicular lymphoma, lymph node .b 1176 to 1643 467 to 1       467/471
(99 %)
1 diff
(99.8 %id)
AI768628 Kidney .b 1177 to 1649 473 to 1       473/473
(100 %)
0 diff
(100 %id)
BP385231 pancreatic islet .b 1219 to 1629 1 to 411     Submitted on the opposite strand 411/411
(100 %)
1 diff
(99.8 %id)
BM809042 brain, hippocampus .b 1224 to 1663 11 to 447       437/486
(89 %)
10 diff
(98.0 %id)
BG944160 blood .b 1233 to 1636 434 to 31   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 404/404
(100 %)
2 diff
(99.6 %id)
AI033928 parathyroid gland, parathyroid tumor .b 1234 to 1645 417 to 6       412/417
(98 %)
0 diff
(100 %id)
AI017399 Kidney .b 1237 to 1643 407 to 1       407/407
(100 %)
0 diff
(100 %id)
T52201 fetal spleen, Spleen .b 1257 to 1627 393 to 10       384/394
(97 %)
0 diff
(100 %id)
AI288487 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1261 to 1717 457 to 1       457/457
(100 %)
0 diff
(100 %id)
AA652698 normal prostate, Prostate .b 1309 to 1645 337 to 1       337/337
(100 %)
0 diff
(100 %id)
BU679614 lung, Primary Lung Epithelial Cells .b 1314 to 1643 341 to 12   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 330/332
(99 %)
6 diff
(98.2 %id)
BM955581 tonsil .b 1320 to 1823 1 to 504       504/504
(100 %)
4 diff
(99.3 %id)
AI633777 pooled germ cell tumors .b 1344 to 1643 300 to 1       300/300
(100 %)
0 diff
(100 %id)
AI302953 2 pooled tumors (clear cell type), Kidney .b 1464 to 1719 256 to 1       256/256
(100 %)
0 diff
(100 %id)
FN084926 breast carcinoma .b 1490 to 1541 53 to 1     Submitted on the opposite strand 53/54
(98 %)
1 diff
(98.2 %id)
FN060010 breast carcinoma .b 1524 to 1622 1 to 99       99/99
(100 %)
1 diff
(99.0 %id)
AW961768   .b 1654 to 2211 1 to 562   tiling clone,   562/563
(99 %)
26 diff
(95.4 %id)
BE568080 bladder, carcinoma, cell line .b 1667 to 2355 1 to 691       691/691
(100 %)
16 diff
(97.7 %id)
BQ004708 Chondrosarcoma, Left Pelvis .b 1884 to 2669 803 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 785/785
(100 %)
5 diff
(99.4 %id)
BU619905 Cell Line, Chondrosarcoma .b 1920 to 2669 766 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 748/748
(100 %)
3 diff
(99.6 %id)
W39001 parathyroid gland, parathyroid tumor .b 2002 to 2406 1 to 407       407/407
(100 %)
3 diff
(99.3 %id)
BE326646 Kidney .b 2119 to 2669 551 to 1       551/551
(100 %)
0 diff
(100 %id)
AI911692 adenocarcinoma, Pancreas .b 2169 to 2504 336 to 1       336/336
(100 %)
1 diff
(99.8 %id)
BM956070 tonsil .b 2191 to 2618 428 to 1       428/428
(100 %)
1 diff
(99.8 %id)
AI457837 carcinoid, lung .b 2194 to 2673 480 to 1       480/480
(100 %)
0 diff
(100 %id)
AI738650 colon, colon tumor, RER+ .b 2194 to 2669 476 to 1       476/476
(100 %)
7 diff
(98.6 %id)
AI167387 parathyroid gland, parathyroid tumor .b 2237 to 2669 450 to 18   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 433/433
(100 %)
1 diff
(99.8 %id)
AI290707 carcinoid, lung .b 2244 to 2673 430 to 1       430/430
(100 %)
0 diff
(100 %id)
AW341078 carcinoid, lung .b 2280 to 2675 397 to 2       396/397
(99 %)
0 diff
(100 %id)
AI748918 aorta .b 2289 to 2669 380 to 1       380/380
(100 %)
2 diff
(99.5 %id)
BG942283 blood .b 2348 to 2674 356 to 30       327/356
(91 %)
0 diff
(100 %id)
AI239716 pooled .b 2435 to 2849 415 to 1   tiling clone,   415/415
(100 %)
0 diff
(100 %id)
AY191592   .c 1 to 516 1 to 516 exact tiling clone,   516/524
(98 %)
2 diff
(99.7 %id)
AW888799.
matches multiple genes
nervous_tumor .d-u 1 to 328 328 to 1   tiling clone, also hits gene skeyva 328/349
(93 %)
5 diff
(98.6 %id)
AK098761.
matches multiple genes
brain .d-u 56 to 1744 1 to 1692 exact tiling clone, available from FLJ, also hits gene skeyva 1692/1692
(100 %)
6 diff
(99.7 %id)
R55174.
matches multiple genes
whole brain .d-u 345 to 786 1 to 463     also hits gene skeyva 463/465
(99 %)
31 diff
(93.4 %id)
Z19829.
matches multiple genes
  .d-u 416 to 605 1 to 196     also hits gene skeyva 196/201
(97 %)
7 diff
(96.6 %id)
X97508.
matches multiple genes
liver and spleen .d-u 508 to 766 300 to 26     also hits gene skeyva 275/300
(91 %)
0 diff
(100 %id)
R55127.
matches multiple genes
whole brain .d-u 1382 to 1754 375 to 1   tiling clone, also hits gene skeyva 375/375
(100 %)
5 diff
(98.7 %id)
G43495.
matches multiple genes
  .d-u 1595 to 1718 125 to 1   tiling clone, Submitted on the opposite strand, also hits gene skeyva 125/125
(100 %)
2 diff
(98.4 %id)
BG944227 blood .e 1 to 629 1 to 629 N73T F78V Q86X tiling clone,   629/629
(100 %)
3 diff
(99.6 %id)
CD693776 normal nasopharynx .e 28 to 429 23 to 424       402/424
(94 %)
9 diff
(97.9 %id)
DA484365 brain .f 1 to 553 2 to 554 exact tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
BU663084 blood .f 97 to 385 30 to 322       298/322
(92 %)
19 diff
(94.1 %id)
FN051780 breast carcinoma .f 249 to 371 1 to 123       123/123
(100 %)
0 diff
(100 %id)
FN169724 breast carcinoma .f 398 to 485 1 to 91       91/91
(100 %)
6 diff
(93.5 %id)
FN076738 breast carcinoma .f 411 to 509 1 to 99       99/100
(99 %)
1 diff
(99.0 %id)
BQ687516.
matches multiple genes
ductal carcinoma, cell line, Pancreas .g 1 to 813 844 to 29     Submitted on the opposite strand, also hits gene F8, slobaw 816/931
(87 %)
0 diff
(100 %id)
BI771989.
matches multiple genes
pooled lung and spleen .g 5 to 906 897 to 1   tiling clone, Submitted on the opposite strand, also hits gene F8, slobaw 897/936
(95 %)
15 diff
(98.4 %id)
BU162872.
matches multiple genes
ductal carcinoma, cell line, Pancreas .g 5 to 817 811 to 1     Submitted on the opposite strand, also hits gene F8, slobaw 811/1011
(80 %)
17 diff
(98.4 %id)
BU185230.
matches multiple genes
ductal carcinoma, cell line, Pancreas .g 5 to 817 814 to 1     Submitted on the opposite strand, also hits gene F8, slobaw 814/1051
(77 %)
17 diff
(98.4 %id)
BQ883340.
matches multiple genes
ductal carcinoma, cell line, Pancreas .g 5 to 817 813 to 1     Submitted on the opposite strand, also hits gene F8, slobaw 813/839
(96 %)
5 diff
(99.5 %id)
BQ690900.
matches multiple genes
ductal carcinoma, cell line, Pancreas .g 5 to 817 814 to 1     Submitted on the opposite strand, also hits gene F8, slobaw 814/832
(97 %)
6 diff
(99.3 %id)
BQ688983.
matches multiple genes
ductal carcinoma, cell line, Pancreas .g 5 to 817 815 to 1     Submitted on the opposite strand, also hits gene F8, slobaw 815/880
(92 %)
9 diff
(99.0 %id)
BQ686725.
matches multiple genes
ductal carcinoma, cell line, Pancreas .g 5 to 817 816 to 1     Submitted on the opposite strand, also hits gene F8, slobaw 816/872
(93 %)
13 diff
(98.6 %id)
BQ685626.
matches multiple genes
ductal carcinoma, cell line, Pancreas .g 5 to 817 814 to 1   tiling clone, Submitted on the opposite strand, also hits gene F8, slobaw 814/817
(99 %)
6 diff
(99.3 %id)
BQ685712.
matches multiple genes
ductal carcinoma, cell line, Pancreas .g 5 to 817 813 to 1     Submitted on the opposite strand, also hits gene F8, slobaw 813/831
(97 %)
6 diff
(99.3 %id)
TI_57182352.
matches multiple genes
  .g 5 to 912 929 to 27   tiling clone, Submitted on the opposite strand, also hits gene F8, slobaw 903/968
(93 %)
0 diff
(100 %id)
BU150539.
matches multiple genes
ductal carcinoma, cell line, Pancreas .g 6 to 817 817 to 1     Submitted on the opposite strand, also hits gene F8, slobaw 817/899
(90 %)
15 diff
(98.4 %id)
BQ687733.
matches multiple genes
ductal carcinoma, cell line, Pancreas .g 6 to 817 817 to 1     Submitted on the opposite strand, also hits gene F8, slobaw 817/854
(95 %)
12 diff
(98.6 %id)
BQ896427.
matches multiple genes
brain, neuroblastoma, cell line .g 7 to 753 747 to 1   tiling clone, Submitted on the opposite strand, also hits gene F8, slobaw 747/749
(99 %)
11 diff
(98.6 %id)
BU163642.
matches multiple genes
ductal carcinoma, cell line, Pancreas .g 8 to 817 817 to 1     Submitted on the opposite strand, also hits gene F8, slobaw 817/1023
(79 %)
30 diff
(97.1 %id)
BQ688236.
matches multiple genes
ductal carcinoma, cell line, Pancreas .g 8 to 817 823 to 1     Submitted on the opposite strand, also hits gene F8, slobaw 823/925
(88 %)
40 diff
(95.7 %id)
BQ689312.
matches multiple genes
ductal carcinoma, cell line, Pancreas .g 8 to 817 812 to 1     Submitted on the opposite strand, also hits gene F8, slobaw 812/887
(91 %)
14 diff
(98.5 %id)
BQ689272.
matches multiple genes
ductal carcinoma, cell line, Pancreas .g 8 to 817 823 to 1     Submitted on the opposite strand, also hits gene F8, slobaw 823/838
(98 %)
18 diff
(97.9 %id)
CR748600.
matches multiple genes
liver and spleen .g 10 to 760 751 to 1   tiling clone, Submitted on the opposite strand, also hits gene slobaw 751/751
(100 %)
0 diff
(100 %id)
BQ889286.
matches multiple genes
ductal carcinoma, cell line, Pancreas .g 17 to 817 802 to 1   tiling clone, Submitted on the opposite strand, also hits gene F8, slobaw 802/817
(98 %)
6 diff
(99.3 %id)
BQ892845.
matches multiple genes
ductal carcinoma, cell line, Pancreas .g 24 to 817 811 to 1     Submitted on the opposite strand, also hits gene F8, slobaw 811/882
(91 %)
21 diff
(97.7 %id)
BQ690927.
matches multiple genes
ductal carcinoma, cell line, Pancreas .g 24 to 810 791 to 1     Submitted on the opposite strand, also hits gene F8, slobaw 791/917
(86 %)
25 diff
(97.3 %id)
BQ686898.
matches multiple genes
ductal carcinoma, cell line, Pancreas .g 158 to 817 682 to 1     Submitted on the opposite strand, also hits gene F8, slobaw 682/814
(83 %)
28 diff
(96.6 %id)
AA405447.
matches multiple genes
  .g 250 to 787 532 to 1     Submitted on the opposite strand, also hits gene F8, slobaw 532/550
(96 %)
22 diff
(96.0 %id)
BE960893.
matches multiple genes
melanotic melanoma, high MDR, skin .g 333 to 769 559 to 124     Submitted on the opposite strand, also hits gene F8, slobaw 436/560
(77 %)
0 diff
(100 %id)
BE819624.
matches multiple genes
breast_normal .g 359 to 837 486 to 8     also hits gene F8, slobaw 479/489
(97 %)
0 diff
(100 %id)
BE819520.
matches multiple genes
breast_normal .g 362 to 844 488 to 7     also hits gene F8, slobaw 482/490
(98 %)
0 diff
(100 %id)
BE819535.
matches multiple genes
breast_normal .g 362 to 808 450 to 4     also hits gene F8, slobaw 447/452
(98 %)
0 diff
(100 %id)
T87589 liver and spleen .g 416 to 768 354 to 1     Submitted on the opposite strand 354/447
(79 %)
13 diff
(97.1 %id)
BI062647.
matches multiple genes
uterus_tumor .g 466 to 810 345 to 1     also hits gene slobaw 345/345
(100 %)
0 diff
(100 %id)
BI752892.
matches multiple genes
brain .g 581 to 1388 823 to 1   tiling clone, Submitted on the opposite strand, also hits gene F8, slobaw 823/823
(100 %)
26 diff
(96.9 %id)
TI_57219716.
matches multiple genes
  .g 581 to 1392 891 to 65 G15R A16G A17T G18L A19E ...   Submitted on the opposite strand, also hits gene F8, slobaw 827/891
(92 %)
25 diff
(97.2 %id)
T28402.
matches multiple genes
uterus .g 631 to 877 247 to 1   tiling clone, Submitted on the opposite strand, also hits gene F8, slobaw 247/247
(100 %)
0 diff
(100 %id)
BC042086 Blood, adult leukocytes .h 1 to 1700 1 to 1700 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 1700/1700
(100 %)
0 diff
(100 %id)
BQ072670.
matches multiple genes
leukocyte .h 1 to 925 20 to 955 exact tiling clone, available from MGC, also hits gene skeyva 936/1071
(87 %)
27 diff
(97.5 %id)
CN314409.
matches multiple genes
embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .h 793 to 1423 1 to 631   tiling clone, also hits gene skeyva 631/632
(99 %)
4 diff
(99.4 %id)
BF910623.
matches multiple genes
uterus_tumor .h 994 to 1310 22 to 338   tiling clone, also hits gene skeyva 317/338
(93 %)
6 diff
(98.3 %id)
AA707794.
matches multiple genes
pineal gland .h 1234 to 1700 468 to 1   tiling clone, also hits gene skeyva 468/468
(100 %)
2 diff
(99.6 %id)
BF899265.
matches multiple genes
marrow .i 1 to 273 275 to 5   tiling clone, Submitted on the opposite strand, also hits gene skeyva 271/275
(98 %)
0 diff
(100 %id)
L23866.
matches multiple genes
  .i 193 to 281 1 to 89     also hits gene skeyva 89/89
(100 %)
0 diff
(100 %id)
U00684.
matches multiple genes
  .i 193 to 745 1 to 551 S3A V15A S76P P97S P98G ... tiling clone, also hits gene skeyva 551/551
(100 %)
5 diff
(99.1 %id)
L23868.
matches multiple genes
  .i 282 to 440 1 to 158   tiling clone, also hits gene skeyva 158/158
(100 %)
2 diff
(98.8 %id)
BQ070524.
matches multiple genes
brain, neuroblastoma, cell line .j 1 to 684 694 to -5 R2G D3G T4L S5L Q6G ... tiling clone, Submitted on the opposite strand, also hits gene F8, slobaw 694/1074
(64 %)
23 diff
(97.9 %id)
BX644151   .k-u 1 to 515 1 to 515 G3X tiling clone,   515/515
(100 %)
0 diff
(100 %id)
L23867.
matches multiple genes
  .l-u 1 to 99 1 to 99 exact tiling clone, also hits gene skeyva 99/100
(99 %)
2 diff
(98.0 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e, .f, .g, .h, .i, .j, .k-u, .l-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI