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Gene CLDN15TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
85 supporting clones for gene CLDN15 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DN999248   .a 1 to 678 1 to 678   tiling clone,   678/678
(100 %)
4 diff
(99.5 %id)
NM_014343.2   .a 7 to 1375 1 to 1369 exact RefSeq, AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 1369/1369
(100 %)
0 diff
(100 %id)
AJ245738 Kidney .a 118 to 1375 1 to 1258 exact tiling clone, fully sequenced,   1258/1258
(100 %)
1 diff
(100.0 %id)
AI433892 Kidney .a 879 to 1368 490 to 1   fully sequenced,   490/490
(100 %)
2 diff
(99.6 %id)
AK056103   .b 1 to 2128 2 to 2129 exact tiling clone, available from FLJ,   2129/2129
(100 %)
1 diff
(100.0 %id)
NM_001185080.1   .b 1 to 2129 2 to 2130 exact RefSeq, AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 2130/2130
(100 %)
0 diff
(100 %id)
DA698836   .b 1 to 501 2 to 502   capped   501/501
(100 %)
1 diff
(99.9 %id)
DA825485 pericardium .b 181 to 664 2 to 485   capped   484/484
(100 %)
0 diff
(100 %id)
DB158141 thymus .b 182 to 757 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
BF528121 anaplastic oligodendroglioma with 1p/19qloss, brain .b 196 to 840 1 to 644   tiling clone,   644/644
(100 %)
3 diff
(99.6 %id)
BG015569 placenta_normal .b 257 to 555 300 to 2       299/300
(99 %)
0 diff
(100 %id)
BF931304 nervous_tumor .b 377 to 772 400 to 4     Submitted on the opposite strand 397/400
(99 %)
0 diff
(100 %id)
BI028839 marrow .b 400 to 711 313 to 1       313/313
(100 %)
4 diff
(98.8 %id)
BG386955 adenocarcinoma cell line, colon .b 854 to 1253 1 to 400       400/461
(86 %)
6 diff
(98.7 %id)
BG386497 adenocarcinoma cell line, colon .b 855 to 1445 1 to 590       590/590
(100 %)
5 diff
(99.2 %id)
AW607830 head_neck .b 870 to 1242 377 to 6       372/413
(90 %)
0 diff
(100 %id)
AW607831 head_neck .b 870 to 1246 391 to 15       377/427
(88 %)
0 diff
(100 %id)
BM752281 Ascites, stomach .b 905 to 1484 1 to 580       580/580
(100 %)
5 diff
(99.2 %id)
BM764727 Ascites, stomach .b 905 to 1560 1 to 656       656/656
(100 %)
0 diff
(100 %id)
BM764745 Ascites, stomach .b 905 to 1552 1 to 648       648/648
(100 %)
0 diff
(100 %id)
BM744462 stomach .b 905 to 1378 1 to 474       474/474
(100 %)
0 diff
(100 %id)
BQ695317 adipose .b 925 to 1458 1 to 534       534/534
(100 %)
0 diff
(100 %id)
R49759 breast .b 928 to 1281 1 to 371       371/372
(99 %)
31 diff
(91.7 %id)
CB265853 adipose .b 935 to 1382 1 to 448       448/448
(100 %)
0 diff
(100 %id)
BM820722 Ascites, stomach .b 956 to 1466 1 to 511       511/511
(100 %)
1 diff
(99.9 %id)
BM781700 Ascites, stomach .b 956 to 1523 1 to 568       568/568
(100 %)
0 diff
(100 %id)
BM709159 eye, optic nerve .b 1543 to 2128 1 to 586   fully sequenced, AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 586/586
(100 %)
1 diff
(99.9 %id)
DB323566   .b 1604 to 2128 525 to 1       525/525
(100 %)
0 diff
(100 %id)
BM931481 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1604 to 2126 1 to 523   fully sequenced, Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 523/523
(100 %)
1 diff
(99.9 %id)
BM675609 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1649 to 2128 498 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 480/480
(100 %)
0 diff
(100 %id)
AI346607 adenocarcinoma, colon .b 1663 to 2129 467 to 1   tiling clone,   467/467
(100 %)
0 diff
(100 %id)
AW138147   .b 1663 to 2128 483 to 18   AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 466/466
(100 %)
1 diff
(99.8 %id)
CA419123 Chondrosarcoma Grade II, Left Pelvis .b 1679 to 2128 468 to 19   AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 450/450
(100 %)
0 diff
(100 %id)
BU732214 eye, optic nerve .b 1800 to 2128 347 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 329/329
(100 %)
0 diff
(100 %id)
BM854992 stomach .c 1 to 492 1 to 492   tiling clone,   492/492
(100 %)
1 diff
(99.8 %id)
BM821479 stomach .c 3 to 417 1 to 415       415/415
(100 %)
2 diff
(99.6 %id)
AL573157 placenta, Placenta Cot 25-normalized .c 183 to 899 1 to 717   tiling clone,   717/717
(100 %)
4 diff
(99.5 %id)
AL548650 placenta, Placenta Cot 25-normalized .c 188 to 867 683 to 6       678/688
(98 %)
2 diff
(99.8 %id)
BM997988 lung, Metastatic Chondrosarcoma .c 258 to 899 659 to 19   AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 641/643
(99 %)
1 diff
(99.9 %id)
AW139913   .c 471 to 899 446 to 18   AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 429/432
(99 %)
3 diff
(99.4 %id)
BE245428 leukopheresis .c 471 to 898 428 to 2       427/430
(99 %)
0 diff
(100 %id)
AW614657 Kidney .c 489 to 899 413 to 3       411/413
(99 %)
0 diff
(100 %id)
AA830570 germinal center B cell .c 490 to 900 428 to 23   AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 406/406
(100 %)
9 diff
(97.8 %id)
AA938664 germinal center B cell .c 498 to 900 424 to 23   AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 402/402
(100 %)
6 diff
(98.6 %id)
AW140129   .c 503 to 899 415 to 18   AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 398/399
(99 %)
1 diff
(99.8 %id)
AA857182 adenocarcinoma, colon .c 504 to 899 391 to 1       391/391
(100 %)
13 diff
(96.7 %id)
AA857197 adenocarcinoma, colon .c 511 to 886 376 to 4       373/376
(99 %)
0 diff
(100 %id)
AA938732 germinal center B cell .c 518 to 899 393 to 13   AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 381/381
(100 %)
6 diff
(98.5 %id)
AI768829 2 pooled tumors (clear cell type), Kidney .c 522 to 899 382 to 5       378/382
(98 %)
0 diff
(100 %id)
AI660323 thymus, pooled .c 543 to 898 366 to 11   AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 356/356
(100 %)
1 diff
(99.8 %id)
AI379195 B-cell, chronic lymphotic leukemia .c 548 to 899 372 to 22   AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 351/351
(100 %)
7 diff
(98.1 %id)
BE464123 pooled germ cell tumors .c 606 to 899 297 to 3       295/297
(99 %)
0 diff
(100 %id)
AA975483 pooled .c 607 to 899 312 to 21   AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 292/292
(100 %)
6 diff
(98.0 %id)
AA916336 adenocarcinoma, colon .c 611 to 899 312 to 27   AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 286/286
(100 %)
5 diff
(98.3 %id)
AA514265 colon .c 627 to 900 288 to 16   AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 273/273
(100 %)
6 diff
(97.9 %id)
BM832816 stomach .c 666 to 899 1 to 234   AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 234/234
(100 %)
0 diff
(100 %id)
AW611664 Kidney .c 736 to 901 166 to 1   tiling clone,   166/166
(100 %)
0 diff
(100 %id)
AA876060 colon, colon tumor RER+ .c 737 to 899 167 to 5       163/167
(97 %)
0 diff
(100 %id)
AW025084 Kidney .c 761 to 899 143 to 5       139/143
(97 %)
0 diff
(100 %id)
BX327846 Placenta Cot 25-normalized .c 776 to 899 1 to 124       124/131
(94 %)
3 diff
(97.8 %id)
BF941919 sciatic nerve .c 777 to 899 141 to 19   AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 123/126
(97 %)
4 diff
(96.9 %id)
BM784371 stomach .d 1 to 622 1 to 622   tiling clone,   622/622
(100 %)
0 diff
(100 %id)
BM764542 Ascites, stomach .d 27 to 625 1 to 599 exact tiling clone,   599/599
(100 %)
0 diff
(100 %id)
BM772719 Ascites, stomach .d 27 to 621 1 to 595       595/595
(100 %)
0 diff
(100 %id)
AK124705 amygdala .e-u 1 to 3353 2 to 3354 exact tiling clone, available from FLJ,   3354/3354
(100 %)
1 diff
(100.0 %id)
DA187798 amygdala .e-u 1 to 535 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
AW009836 colon .e-u 443 to 695 258 to 6       253/258
(98 %)
0 diff
(100 %id)
BM013007 brain, neuroblastoma, cell line .e-u 783 to 1527 1 to 760       760/763
(99 %)
37 diff
(95.2 %id)
TI_59382245   .e-u 783 to 1527 128 to 887       760/763
(99 %)
37 diff
(95.2 %id)
DB192727 ovary, tumor tissue .e-u 1173 to 1734 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DB303219 amygdala .e-u 2838 to 3353 516 to 1       516/516
(100 %)
0 diff
(100 %id)
DB347762 ovary, tumor tissue .e-u 2888 to 3353 466 to 1       466/477
(97 %)
1 diff
(99.8 %id)
BE268305 Burkitt lymphoma, lymph .f 1 to 638 16 to 652 F8L     637/652
(97 %)
7 diff
(99.0 %id)
BC010160 Lymph, Burkitt lymphoma .f 8 to 1178 1 to 1171 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 1171/1174
(99 %)
1 diff
(100.0 %id)
BE560063 Burkitt lymphoma, lymph .f 43 to 758 1 to 720 F10L F11L M12H A13G T14N ...     720/957
(75 %)
15 diff
(98.5 %id)
CV028423 mixed .f 177 to 486 1 to 310       310/310
(100 %)
5 diff
(98.4 %id)
AA564351 germ cell tumor .f 774 to 1151 380 to 1       380/380
(100 %)
7 diff
(98.2 %id)
BX506030   .g-u 1 to 481 1 to 481   tiling clone,   481/481
(100 %)
0 diff
(100 %id)
BQ672780 epidermoid carcinoma, cell line, salivary gland .g-u 205 to 528 1 to 324       324/1247
(25 %)
10 diff
(99.2 %id)
BQ670951 epidermoid carcinoma, cell line, salivary gland .g-u 205 to 554 1 to 350   tiling clone,   350/1126
(31 %)
4 diff
(99.7 %id)
BG681130 skin, squamous cell carcinoma .g-u 310 to 726 1 to 418   tiling clone,   418/577
(72 %)
4 diff
(99.4 %id)
BQ722212 sympathetic trunk .g-u 615 to 1220 1 to 609   tiling clone,   609/985
(61 %)
16 diff
(98.4 %id)
TI_159689370   .g-u 819 to 1611 936 to 148 A3G S19F S26F E32G R33G ... tiling clone, AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 789/856
(92 %)
72 diff
(91.6 %id)
BE795653 lung, small cell carcinoma .h 1 to 718 1 to 710 exact tiling clone,   710/972
(73 %)
10 diff
(99.0 %id)
BM702115 eye, optic nerve .i 1 to 562 1 to 562   tiling clone, fully sequenced, Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 562/562
(100 %)
0 diff
(100 %id)
BX092388 liver and spleen .i 230 to 960 1 to 732 exact     732/732
(100 %)
2 diff
(99.8 %id)
H75417 liver and spleen .i 230 to 509 1 to 280       280/280
(100 %)
4 diff
(98.6 %id)
BQ001742 lung, Metastatic Chondrosarcoma .i 348 to 1027 696 to 19 exact tiling clone, AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 678/678
(100 %)
2 diff
(99.8 %id)
TI_154130163   .i 363 to 1027 755 to 95 V2C A3H I4L S5L W6Y ... AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 661/680
(97 %)
14 diff
(98.0 %id)
BM666700 eye, optic nerve .i 532 to 1027 514 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (30/30 A in genome downstream of last aligned base) 496/496
(100 %)
1 diff
(99.8 %id)
H68484 liver and spleen .i 685 to 1024 344 to 1       344/357
(96 %)
14 diff
(96.1 %id)
DA194858 amygdala .j-u 1 to 541 2 to 542 exact tiling clone, capped   541/541
(100 %)
1 diff
(99.9 %id)
AI809722 pooled Gene CLDN15, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f, .g-u, .h, .i, .j-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C