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Gene CLDN10TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
134 supporting clones for gene CLDN10 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_006984.4   .a 1 to 2489 2 to 2490 exact RefSeq,   2490/2490
(100 %)
0 diff
(100 %id)
DA133712 alzheimer cortex .a 1 to 559 2 to 560   tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
CN408190 embryonic stem cells, DMSO-treated H9 cellline .a 6 to 475 1 to 470       470/470
(100 %)
5 diff
(99.0 %id)
BU930613 Prostate .a 10 to 507 1 to 505       505/692
(72 %)
16 diff
(97.7 %id)
TI_44168450   .a 10 to 612 79 to 682       604/682
(88 %)
10 diff
(98.6 %id)
BG432177 Kidney .a 12 to 527 1 to 522       522/830
(62 %)
14 diff
(98.4 %id)
BI548247 brain, hippocampus .a 15 to 612 1 to 598       598/598
(100 %)
4 diff
(99.4 %id)
TI_44167082   .a 20 to 713 83 to 775       693/776
(89 %)
11 diff
(98.6 %id)
BG702680 brain, hippocampus .a 22 to 694 1 to 674       674/677
(99 %)
9 diff
(98.7 %id)
H48299 liver and spleen .a 23 to 441 1 to 427       427/452
(94 %)
21 diff
(95.4 %id)
BI548580 brain, hippocampus .a 23 to 713 1 to 691       691/692
(99 %)
10 diff
(98.6 %id)
BG707414 brain, hypothalamus .a 24 to 860 1 to 835 T216R P218L S219Q     835/835
(100 %)
11 diff
(98.7 %id)
CD689125 normal nasopharynx .a 25 to 627 29 to 632       604/632
(95 %)
10 diff
(98.5 %id)
CD702799 normal nasopharynx .a 25 to 693 21 to 689       669/689
(97 %)
10 diff
(98.6 %id)
CD709416 normal nasopharynx .a 25 to 577 31 to 583       553/583
(94 %)
6 diff
(99.0 %id)
BG429316 Kidney .a 26 to 615 1 to 590       590/590
(100 %)
0 diff
(100 %id)
CA335155 posterior tongue (pooled) .a 26 to 649 1 to 624       624/624
(100 %)
1 diff
(99.9 %id)
DB468948.
matches multiple genes
hippocampus .a 27 to 437 1 to 411     also hits gene DZIP1 411/411
(100 %)
2 diff
(99.6 %id)
DB474851.
matches multiple genes
hippocampus .a 27 to 518 1 to 492     also hits gene DZIP1 492/492
(100 %)
0 diff
(100 %id)
DB475902.
matches multiple genes
hippocampus .a 27 to 522 1 to 497     also hits gene DZIP1 497/497
(100 %)
3 diff
(99.4 %id)
BG399450 Kidney .a 27 to 706 1 to 671       673/902
(74 %)
26 diff
(97.2 %id)
BG568349 Liver .a 27 to 743 1 to 716       716/725
(98 %)
8 diff
(98.9 %id)
BG701332 brain, hippocampus .a 28 to 748 1 to 721 R191D Y192T T193H Y194T N195T ...     721/721
(100 %)
6 diff
(99.2 %id)
BG701489 brain, hippocampus .a 28 to 881 1 to 858 G17R W18L V19G L20T V21G ...     858/861
(99 %)
29 diff
(96.7 %id)
DA293671 hippocampus .a 29 to 561 2 to 536   capped   535/535
(100 %)
3 diff
(99.5 %id)
TI_57152131   .a 30 to 823 62 to 859 E211R D212R K214Y T215N T216K ...     798/863
(92 %)
21 diff
(97.6 %id)
BF693951 muscle (skeletal) .a 31 to 526 1 to 491       491/822
(59 %)
12 diff
(98.6 %id)
BI666805 brain, hypothalamus .a 31 to 732 1 to 701       701/702
(99 %)
10 diff
(98.6 %id)
BC010920 skeletal muscle .a 32 to 975 5 to 948 exact tiling clone, available from MGC, AAA   944/944
(100 %)
0 diff
(100 %id)
DB479383 hippocampus .a 32 to 493 1 to 462       462/462
(100 %)
0 diff
(100 %id)
DB504264 hypothalamus .a 32 to 508 1 to 477       477/477
(100 %)
0 diff
(100 %id)
AL699037 human skeletal muscle .a 33 to 573 1 to 541       541/541
(100 %)
0 diff
(100 %id)
CB047644 Kidney .a 34 to 387 1 to 354   fully sequenced,   354/354
(100 %)
4 diff
(98.9 %id)
CA776623 Pancreas, Purified pancreatic islet .a 34 to 555 1 to 522   fully sequenced,   522/522
(100 %)
5 diff
(99.1 %id)
TI_44342998   .a 35 to 732 151 to 847       697/848
(82 %)
12 diff
(98.6 %id)
U89916 liver; spleen .a 35 to 970 1 to 934 exact     934/934
(100 %)
4 diff
(99.6 %id)
AW160992 brain, frontal lobe .a 36 to 473 1 to 438   fully sequenced,   438/438
(100 %)
0 diff
(100 %id)
DN994420 brain, whole brain .a 37 to 759 8 to 724 K206S Y207I H208M G209V G210E ...     717/724
(99 %)
12 diff
(98.4 %id)
BI763485 pooled colon, kidney, stomach .a 38 to 823 1 to 791 E211R D212R K214Y T215N T216K ...     791/795
(99 %)
15 diff
(98.2 %id)
AA150627 uterus .a 39 to 472 1 to 433   fully sequenced,   433/433
(100 %)
3 diff
(99.4 %id)
BI523494 brain .a 39 to 693 1 to 654       654/657
(99 %)
5 diff
(99.3 %id)
TI_44184822   .a 39 to 693 1 to 654       654/657
(99 %)
5 diff
(99.3 %id)
CN408188 embryonic stem cells, DMSO-treated H9 cellline .a 41 to 812 1 to 771 exact     771/771
(100 %)
1 diff
(99.9 %id)
AV656132 corresponding non cancerous liver tissue .a 42 to 402 1 to 361     Submitted on the opposite strand 361/361
(100 %)
6 diff
(98.4 %id)
AA341006 Kidney .a 47 to 367 1 to 321       321/321
(100 %)
0 diff
(100 %id)
AK315737 thalamus .a 48 to 747 1 to 700 exact     700/700
(100 %)
0 diff
(100 %id)
DA391704 thalamus .a 49 to 632 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
TI_1948241517   .a 58 to 419 139 to 500       362/387
(93 %)
6 diff
(98.5 %id)
TI_1948241518   .a 58 to 440 137 to 519       383/408
(93 %)
6 diff
(98.6 %id)
TI_1948241767   .a 58 to 447 137 to 526       390/415
(93 %)
6 diff
(98.6 %id)
TI_1948241768   .a 58 to 396 136 to 474       339/365
(92 %)
6 diff
(98.4 %id)
TI_1948242021   .a 58 to 504 139 to 586       448/472
(94 %)
16 diff
(96.7 %id)
TI_1948242257   .a 58 to 574 134 to 650       517/542
(95 %)
6 diff
(98.9 %id)
CR456845   .a 61 to 747 1 to 687 exact     687/687
(100 %)
1 diff
(99.9 %id)
EL733415 mixed .a 61 to 612 1 to 552       552/552
(100 %)
0 diff
(100 %id)
BM091091 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .a 63 to 525 1 to 465       465/529
(87 %)
23 diff
(95.7 %id)
TI_1948242258   .a 65 to 746 808 to 128       681/1380
(49 %)
31 diff
(97.8 %id)
CN408189 embryonic stem cells, cell lines H1, H7, andH9 .a 109 to 844 1 to 737       737/737
(100 %)
1 diff
(99.9 %id)
CB119421 Liver .a 120 to 459 1 to 340       340/340
(100 %)
0 diff
(100 %id)
TI_149307959   .a 163 to 976 909 to 98   AAA   812/959
(84 %)
5 diff
(99.5 %id)
TI_1948241770   .a 237 to 746 635 to 126       510/537
(94 %)
1 diff
(99.9 %id)
BU686852 lung, Primary Lung Epithelial Cells .a 257 to 976 738 to 19   AAA   720/720
(100 %)
0 diff
(100 %id)
TI_1948242259   .a 260 to 746 611 to 125       487/514
(94 %)
1 diff
(99.9 %id)
CB047643 Kidney .a 357 to 970 637 to 24   fully sequenced, AAA   614/614
(100 %)
0 diff
(100 %id)
AA142937 uterus .a 412 to 970 553 to 1   fully sequenced,   553/553
(100 %)
9 diff
(98.4 %id)
AW161675 brain, frontal lobe .a 437 to 967 545 to 15   fully sequenced, AAA   531/531
(100 %)
7 diff
(98.7 %id)
CA776387 Pancreas, Purified pancreatic islet .a 494 to 970 477 to 1   fully sequenced,   477/477
(100 %)
0 diff
(100 %id)
R99994 liver and spleen .a 576 to 966 399 to 1       399/402
(99 %)
12 diff
(97.1 %id)
NM_182848.3   .b 1 to 2657 2 to 2658 exact RefSeq,   2658/2658
(100 %)
0 diff
(100 %id)
DA636757 Kidney .b 1 to 577 2 to 579   tiling clone, capped   578/578
(100 %)
1 diff
(99.9 %id)
AK055855 Kidney .b 5 to 2553 1 to 2549 exact tiling clone, available from FLJ,   2549/2549
(100 %)
2 diff
(100.0 %id)
BG401332 Kidney .b 6 to 462 1 to 458       458/874
(52 %)
9 diff
(99.0 %id)
DA627135 Kidney .b 6 to 558 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
BI758949 pooled colon, kidney, stomach .b 50 to 462 1 to 416       416/731
(56 %)
11 diff
(98.5 %id)
TI_57145844   .b 50 to 462 105 to 520       416/835
(49 %)
11 diff
(98.7 %id)
DB320685 Kidney .b 1987 to 2553 567 to 1       567/567
(100 %)
1 diff
(99.9 %id)
NM_001160100.1   .c 1 to 2600 2 to 2601 exact RefSeq,   2601/2601
(100 %)
0 diff
(100 %id)
AI355429 esophagus, squamous cell carcinoma .c 391 to 1082 696 to 6   tiling clone,   691/708
(97 %)
14 diff
(98.1 %id)
BF940228 brain, glioblastoma (pooled) .c 391 to 1081 691 to 1       691/700
(98 %)
5 diff
(99.3 %id)
TI_157601807   .c 392 to 1081 764 to 75   tiling clone, AAA   690/926
(74 %)
3 diff
(99.7 %id)
AI401597 brain, glioblastoma (pooled) .c 394 to 1081 688 to 1       688/688
(100 %)
5 diff
(99.3 %id)
CA450135 Human Lung Epithelial cells, lung .c 402 to 1081 698 to 19   tiling clone, AAA   680/680
(100 %)
3 diff
(99.6 %id)
AI672314 Kidney .c 418 to 1081 664 to 1       664/664
(100 %)
4 diff
(99.4 %id)
BQ013797 placenta .c 418 to 1081 680 to 18   AAA   663/663
(100 %)
3 diff
(99.6 %id)
CF529337 placenta .c 420 to 1081 680 to 19   AAA   662/662
(100 %)
3 diff
(99.6 %id)
AV728902 hypothalamus .c 424 to 1057 1 to 634       634/634
(100 %)
5 diff
(99.3 %id)
TI_1948241769   .c 431 to 857 555 to 129       427/454
(94 %)
1 diff
(99.8 %id)
BE774656 uterus .c 465 to 772 1 to 311       309/312
(99 %)
14 diff
(95.6 %id)
BG223160 nasopharynx, normal epithelium .c 470 to 855 1 to 386       386/386
(100 %)
11 diff
(97.2 %id)
TI_1948241520   .c 474 to 857 509 to 126       384/411
(93 %)
1 diff
(99.8 %id)
GW493078 diffuse (Lauren) gastric adenocarcinoma, stomach .c 480 to 891 1 to 412       412/412
(100 %)
1 diff
(99.8 %id)
AI889768 adenocarcinoma, Pancreas .c 482 to 1078 630 to 34   AAA   597/598
(99 %)
12 diff
(98.0 %id)
BM955857 tonsil .c 483 to 1081 1 to 599   AAA   599/599
(100 %)
5 diff
(99.2 %id)
TI_1948241519   .c 503 to 857 482 to 128       355/382
(92 %)
1 diff
(99.8 %id)
BM091395 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .c 533 to 1082 556 to 5       552/556
(99 %)
14 diff
(97.5 %id)
TI_1948242022   .c 549 to 857 907 to 596     Submitted on the opposite strand 312/1316
(23 %)
19 diff
(98.6 %id)
TI_157607793   .c 553 to 1081 643 to 115   AAA   529/545
(97 %)
9 diff
(98.4 %id)
AI522065 Kidney .c 554 to 1081 552 to 25   AAA   528/528
(100 %)
9 diff
(98.3 %id)
BG191456   .c 565 to 1060 516 to 19     Submitted on the opposite strand 498/535
(93 %)
24 diff
(95.6 %id)
TI_157605015   .c 585 to 1081 600 to 104   AAA   497/498
(99 %)
2 diff
(99.6 %id)
AI095035 brain, glioblastoma (pooled) .c 599 to 1082 484 to 1       484/491
(98 %)
0 diff
(100 %id)
BG957801 colon .c 603 to 773 182 to 7       176/182
(96 %)
7 diff
(96.2 %id)
AI089846 brain, glioblastoma (pooled) .c 607 to 961 355 to 1       355/355
(100 %)
0 diff
(100 %id)
DB575508 hypothalamus .c 619 to 1081 1 to 463     Submitted on the opposite strand 463/463
(100 %)
0 diff
(100 %id)
R54559 whole brain .c 626 to 1027 5 to 406       402/406
(99 %)
8 diff
(98.1 %id)
AW317009 adenocarcinoma, Pancreas .c 627 to 1082 458 to 2       457/579
(78 %)
10 diff
(98.3 %id)
AW452851   .c 628 to 1078 468 to 18   AAA   451/451
(100 %)
1 diff
(99.8 %id)
AI279959 pooled .c 631 to 1081 462 to 12   AAA   451/466
(96 %)
7 diff
(98.5 %id)
AA902570 Kidney .c 634 to 1045 412 to 1       412/413
(99 %)
18 diff
(95.7 %id)
AV737417 cord Blood .c 640 to 1081 47 to 482   AAA   436/482
(90 %)
14 diff
(97.1 %id)
BX279738 brain, hypothalamus .c 646 to 1081 465 to 29   AAA Submitted on the opposite strand 437/442
(98 %)
2 diff
(99.6 %id)
CF529580 placenta .c 654 to 1081 446 to 19   AAA   428/428
(100 %)
1 diff
(99.8 %id)
AA292311 ovarian tumor, ovary .c 659 to 1037 1 to 377       377/377
(100 %)
5 diff
(98.7 %id)
AA480851 ovarian tumor, ovary .c 660 to 1082 1 to 422   fully sequenced,   422/422
(100 %)
4 diff
(99.1 %id)
CF529753 placenta .c 693 to 1081 407 to 19   AAA   389/389
(100 %)
1 diff
(99.8 %id)
AA394111 ovarian tumor, ovary .c 700 to 1078 395 to 17   AAA   379/379
(100 %)
0 diff
(100 %id)
AW956410   .c 711 to 1080 370 to 1     Submitted on the opposite strand 370/370
(100 %)
12 diff
(96.8 %id)
AI261634 Kidney .c 719 to 1081 363 to 1       363/363
(100 %)
1 diff
(99.8 %id)
AI580518 Kidney .c 741 to 1082 347 to 6       342/357
(95 %)
0 diff
(100 %id)
AW572200 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 741 to 1082 342 to 1       342/347
(98 %)
1 diff
(99.8 %id)
CF529620 placenta .c 750 to 1081 350 to 19   AAA   332/332
(100 %)
3 diff
(99.1 %id)
AA366287 Pancreas .c 781 to 1062 1 to 282       282/286
(98 %)
2 diff
(99.4 %id)
AW960040   .c 782 to 1081 1 to 300   AAA   300/300
(100 %)
0 diff
(100 %id)
BU953679 mixed (pool of 40 RNAs) .c 787 to 1078 1 to 292       292/658
(44 %)
2 diff
(99.7 %id)
AA457739 ovarian tumor, ovary .c 903 to 1085 183 to 1   tiling clone, fully sequenced,   183/183
(100 %)
5 diff
(97.3 %id)
AW151411 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .c 914 to 1081 185 to 16   AAA   170/170
(100 %)
2 diff
(98.9 %id)
BG697724 skin .c 1625 to 2456 1 to 829   tiling clone,   829/833
(99 %)
5 diff
(99.4 %id)
AW299873 Kidney .c 1797 to 2301 505 to 1       505/505
(100 %)
1 diff
(99.9 %id)
AI765941 Kidney .c 1802 to 2301 500 to 1       500/500
(100 %)
2 diff
(99.6 %id)
AW814886 stomach .c 2038 to 2570 116 to 646       531/646
(82 %)
6 diff
(99.1 %id)
AW609590 stomach .c 2046 to 2444 1 to 402       402/402
(100 %)
37 diff
(90.8 %id)
TI_157609552   .c 2084 to 2575 571 to 79   tiling clone, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 493/567
(86 %)
4 diff
(99.3 %id)
R54560 whole brain .c 2098 to 2606 529 to 5       525/529
(99 %)
0 diff
(100 %id)
AI522187 Kidney .c 2536 to 2882 347 to 1   tiling clone,   347/347
(100 %)
0 diff
(100 %id)
W00515 multiple sclerosis lesions .d 1 to 457 1 to 453   tiling clone,   453/512
(88 %)
5 diff
(99.1 %id)
BQ269875 Pancreas, Purified pancreatic islet .d 219 to 730 1 to 512   tiling clone, fully sequenced,   512/512
(100 %)
6 diff
(98.9 %id)
BE857427 brain, glioblastoma (pooled) .d 288 to 922 631 to 1       631/631
(100 %)
7 diff
(98.9 %id)
BQ286532 Pancreas, Purified pancreatic islet .d 700 to 933 234 to 1   tiling clone, fully sequenced,   234/234
(100 %)
5 diff
(97.9 %id)
N63038 multiple sclerosis lesions .d 1922 to 2273 359 to 4   tiling clone,   356/359
(99 %)
0 diff
(100 %id)
DA631660 Kidney .e 1 to 576 2 to 577 exact tiling clone, capped   576/576
(100 %)
1 diff
(99.9 %id)
AF339794 Kidney .f 1 to 511 1 to 511 exact tiling clone, fully sequenced, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 511/511
(100 %)
0 diff
(100 %id)
BG186571   .f 64 to 591 1 to 527   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 527/527
(100 %)
14 diff
(97.4 %id)
BE465772 Kidney .f 140 to 591 465 to 14   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 452/452
(100 %)
5 diff
(98.9 %id)
AI861881 Kidney .f 274 to 511 238 to 1   fully sequenced, Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 238/238
(100 %)
0 diff
(100 %id)
DB317895 Kidney Gene CLDN10, variant not shown              
DA537910 Kidney Gene CLDN10, variant not shown       capped      
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC