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Gene CKS1BTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
515 supporting clones for gene CKS1B back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BP381571 adipose tissue .a 1 to 623 1 to 623 exact tiling clone,   623/623
(100 %)
1 diff
(99.9 %id)
BI087339 cervix .a 13 to 711 1 to 706 D63E F64P P65H H66I S67L ...     706/804
(87 %)
56 diff
(93.1 %id)
AU103405   .b 1 to 50 1 to 50       50/50
(100 %)
0 diff
(100 %id)
AU103399   .b 1 to 50 1 to 50       50/50
(100 %)
0 diff
(100 %id)
BJ990258 hepatoblastoma .b 1 to 589 12 to 600 exact tiling clone,   589/600
(98 %)
6 diff
(99.0 %id)
AU103401   .b 1 to 50 1 to 50       50/50
(100 %)
0 diff
(100 %id)
AU103406   .b 3 to 52 1 to 50       50/50
(100 %)
1 diff
(98.0 %id)
DW434062 Liver .b 11 to 252 15 to 260       246/260
(94 %)
11 diff
(95.8 %id)
DW452721 Liver .b 11 to 186 15 to 191       177/191
(92 %)
6 diff
(96.9 %id)
CN347960 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 17 to 209 1 to 195       195/195
(100 %)
4 diff
(98.0 %id)
CB118784 Liver .b 32 to 247 1 to 216       216/216
(100 %)
6 diff
(97.3 %id)
H75312 liver and spleen .b 74 to 176 1 to 103       103/103
(100 %)
0 diff
(100 %id)
H68268.
matches multiple genes
liver and spleen .b 115 to 191 1 to 77     also hits gene CKS1BP2, CKS1BP3 77/77
(100 %)
0 diff
(100 %id)
BE255916 eye, retinoblastoma .b 118 to 643 1 to 526       526/527
(99 %)
4 diff
(99.3 %id)
AW371701 breast .b 119 to 510 456 to 65       392/485
(80 %)
4 diff
(99.2 %id)
BE892033 melanotic melanoma, skin .b 120 to 718 6 to 609       604/710
(85 %)
15 diff
(97.9 %id)
AA776920   .b 125 to 770 645 to 1       645/645
(100 %)
15 diff
(97.7 %id)
AA293140.
matches multiple genes
ovarian tumor, ovary .b 134 to 561 1 to 427     also hits gene CKS1BP2, CKS1BP3 427/427
(100 %)
3 diff
(99.3 %id)
AA459522.
matches multiple genes
ovarian tumor, ovary .b 134 to 634 1 to 497     Possibly primed on the genome, locally A rich (20/22 A in genome downstream of last aligned base), also hits gene CKS1BP3 497/497
(100 %)
10 diff
(98.0 %id)
AI423153 brain, glioblastoma (pooled) .b 135 to 770 628 to 1       628/628
(100 %)
20 diff
(96.9 %id)
BF910357.
matches multiple genes
uterus_tumor .b 136 to 591 11 to 464     also hits gene CKS1BP2, CKS1BP3 454/464
(97 %)
6 diff
(98.8 %id)
AW662396 colon, moderately-differentiated adenocarcinoma .b 138 to 618 480 to 1       480/480
(100 %)
4 diff
(99.2 %id)
AI865147.
matches multiple genes
lymph node, lymphoma, follicular mixed small and largecell .b 140 to 618 479 to 1     also hits gene CKS1BP2, CKS1BP3 479/479
(100 %)
16 diff
(96.7 %id)
AW514667.
matches multiple genes
moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .b 141 to 618 480 to 1     also hits gene CKS1BP2, CKS1BP3 480/484
(99 %)
2 diff
(99.6 %id)
BU940454 mixed (pool of 40 RNAs) .b 146 to 729 1 to 588       588/847
(69 %)
14 diff
(98.4 %id)
R75953.
matches multiple genes
placenta .b 150 to 541 15 to 406     also hits gene CKS1BP3 392/406
(96 %)
7 diff
(98.3 %id)
BE909377 epithelioid carcinoma, Pancreas .b 160 to 759 610 to 1     Submitted on the opposite strand 610/888
(68 %)
18 diff
(98.0 %id)
AW613002.
matches multiple genes
colon, moderately-differentiated adenocarcinoma .b 186 to 618 433 to 1     also hits gene CKS1BP2, CKS1BP3 433/433
(100 %)
1 diff
(99.8 %id)
AW886710 ovary .b 192 to 513 1 to 320       320/320
(100 %)
6 diff
(98.2 %id)
AI831360 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .b 209 to 774 565 to 1       565/565
(100 %)
11 diff
(98.1 %id)
AA769633 2 pooled tumors (clear cell type), Kidney .b 210 to 777 569 to 3       613/711
(86 %)
19 diff
(97.4 %id)
AW391855 stomach .b 218 to 469 10 to 261       252/491
(51 %)
11 diff
(97.8 %id)
AI085031 liver and spleen .b 240 to 776 545 to 1       545/545
(100 %)
15 diff
(97.3 %id)
AA627684 colon, colon tumor RER+ .b 241 to 764 524 to 1       524/526
(99 %)
22 diff
(95.9 %id)
AI004827   .b 244 to 777 534 to 3   tiling clone,   532/536
(99 %)
0 diff
(100 %id)
AI630359 blood .b 247 to 683 1 to 437       437/437
(100 %)
5 diff
(98.9 %id)
AA507454 breast .b 250 to 776 524 to 1       524/550
(95 %)
10 diff
(98.2 %id)
AA872039 pooled germ cell tumors .b 250 to 776 526 to 1       526/677
(77 %)
6 diff
(99.2 %id)
BF507531.
matches multiple genes
  .b 251 to 684 449 to 16     also hits gene CKS1BP2, CKS1BP3 434/449
(96 %)
0 diff
(100 %id)
AA480310 colon .b 254 to 767 512 to 1       512/552
(92 %)
12 diff
(97.9 %id)
AI041437 parathyroid gland, parathyroid tumor .b 254 to 767 519 to 1       519/531
(97 %)
32 diff
(94.0 %id)
AA643280 epithelium (cell line), Prostate .b 258 to 772 512 to 1       512/512
(100 %)
15 diff
(97.1 %id)
DB384376.
matches multiple genes
  .b 259 to 771 518 to 1     also hits gene PIM1 518/545
(95 %)
15 diff
(97.3 %id)
DW411746 Liver .b 265 to 574 17 to 327       311/327
(95 %)
8 diff
(97.6 %id)
DW446531.
matches multiple genes
Liver .b 265 to 464 17 to 216     also hits gene CKS1BP3 200/216
(92 %)
6 diff
(97.3 %id)
DW467182.
matches multiple genes
Liver .b 265 to 595 17 to 347     also hits gene CKS1BP2, CKS1BP3 331/347
(95 %)
6 diff
(98.3 %id)
EY198502 intestinal (Lauren) gastric adenocarcinoma, stomach .b 267 to 700 434 to 1     Submitted on the opposite strand 434/434
(100 %)
1 diff
(99.8 %id)
EH348432.
matches multiple genes
  .b 270 to 345 1 to 76     also hits gene CKS1BP2, CKS1BP3 76/76
(100 %)
0 diff
(100 %id)
BJ990259 hepatoblastoma .b 1607 to 2146 540 to 1   tiling clone,   540/540
(100 %)
0 diff
(100 %id)
CN347951 embryonic stem cells, DMSO-treated H9 cellline .c 1 to 570 1 to 570 exact tiling clone,   570/570
(100 %)
1 diff
(99.9 %id)
NM_001826.2   .c 3 to 817 1 to 815 exact RefSeq, AAA   815/815
(100 %)
0 diff
(100 %id)
DW423810 Liver .c 6 to 281 15 to 290       276/290
(95 %)
6 diff
(98.0 %id)
BU599929 mixed (pool of 40 RNAs) .c 6 to 692 1 to 690 exact     690/695
(99 %)
6 diff
(99.2 %id)
BU954003 mixed (pool of 40 RNAs) .c 20 to 770 1 to 760 exact     760/944
(80 %)
21 diff
(97.8 %id)
DW448791 Liver .c 21 to 209 18 to 206       189/206
(91 %)
6 diff
(97.1 %id)
BU940284 mixed (pool of 40 RNAs) .c 21 to 729 1 to 713 exact     713/725
(98 %)
6 diff
(99.2 %id)
CD690775 normal nasopharynx .c 23 to 636 31 to 645 Y7X Y8L S9F D10G K11Q ...     615/645
(95 %)
9 diff
(98.7 %id)
DN916778   .c 23 to 657 1 to 635 exact     635/635
(100 %)
0 diff
(100 %id)
DB089503 testis .c 23 to 568 2 to 548 L24R P25A K26Q D27G I28H ... capped   547/547
(100 %)
1 diff
(99.9 %id)
BU594291 mixed (pool of 40 RNAs) .c 24 to 562 1 to 546 exact     546/887
(61 %)
14 diff
(98.5 %id)
BX089434 lung .c 25 to 721 1 to 699 exact     699/699
(100 %)
5 diff
(99.3 %id)
W25611 lung .c 25 to 343 1 to 327       327/339
(96 %)
14 diff
(95.9 %id)
CB143698 Liver .c 26 to 426 1 to 401 exact     401/401
(100 %)
1 diff
(99.8 %id)
BM847215 myeloma .c 26 to 396 1 to 371 exact     371/371
(100 %)
2 diff
(99.5 %id)
AA926959 pooled germ cell tumors .c 29 to 807 36 to 809 exact   Submitted on the opposite strand 774/782
(98 %)
60 diff
(92.4 %id)
BM792646 Ascites, stomach .c 29 to 654 1 to 627 E63Q     627/627
(100 %)
2 diff
(99.7 %id)
TI_154191632   .c 30 to 816 38 to 823 exact AAA   786/786
(100 %)
5 diff
(99.4 %id)
CF127384 Chondrosarcoma Lung Metastasis cell lines, lung .c 31 to 764 1 to 734 exact     734/734
(100 %)
0 diff
(100 %id)
CN347958 embryonic stem cells, cell lines H1, H7, andH9 .c 32 to 760 1 to 729 exact     729/733
(99 %)
4 diff
(99.5 %id)
DW466176 Liver .c 33 to 376 10 to 353 exact     344/353
(97 %)
6 diff
(98.4 %id)
W76521.
matches multiple genes
heart .c 34 to 467 7 to 439 Q49X Q50R S51V Q52R G53D ...   also hits gene CKS1BP3 433/439
(98 %)
1 diff
(99.8 %id)
DW447907 Liver .c 36 to 237 10 to 210       201/210
(95 %)
7 diff
(96.7 %id)
CB997107 placenta, pre-eclamptic placenta .c 36 to 716 28 to 714 exact     687/859
(79 %)
17 diff
(98.1 %id)
BP430365   .c 36 to 328 1 to 293       293/293
(100 %)
0 diff
(100 %id)
BF212585 bone marrow, from chronic myelogenous leukemia .c 37 to 595 1 to 558 exact     558/843
(66 %)
15 diff
(98.3 %id)
BI193453 epithelioid carcinoma cell line, Pancreas .c 37 to 718 1 to 679 F17L E18S Y19I R20D H21M ...     679/680
(99 %)
7 diff
(99.0 %id)
TI_57192990   .c 37 to 818 53 to 829 exact     777/957
(81 %)
11 diff
(98.9 %id)
CD048963 embryonic stem cells, WA01, passage 38 .c 38 to 821 19 to 805 exact     787/926
(84 %)
9 diff
(99.1 %id)
CD247130 embryonic stem cells, WA01, passage 38 .c 38 to 817 19 to 798 K4*     780/798
(97 %)
0 diff
(100 %id)
CD389797 embryonic trophoblasts, made from WA01 stemcells .c 38 to 810 20 to 794 exact     775/797
(97 %)
4 diff
(99.5 %id)
CN347961 embryonic stem cells, DMSO-treated H9 cellline .c 38 to 691 1 to 654 exact     654/654
(100 %)
2 diff
(99.7 %id)
CD048697 embryonic stem cells, WA01, passage 38 .c 39 to 817 13 to 793 exact AAA   781/793
(98 %)
17 diff
(97.9 %id)
BI862096 breast, mammary adenocarcinoma, cell line .c 39 to 818 1 to 775 exact     775/814
(95 %)
11 diff
(98.7 %id)
BQ277400 mixed (pool of 40 RNAs) .c 39 to 815 1 to 788 exact     788/908
(86 %)
20 diff
(97.8 %id)
BU596323 mixed (pool of 40 RNAs) .c 39 to 640 1 to 612 exact     612/873
(70 %)
24 diff
(97.3 %id)
BU597739 mixed (pool of 40 RNAs) .c 39 to 815 1 to 780 exact     780/851
(91 %)
24 diff
(97.2 %id)
BU600912 mixed (pool of 40 RNAs) .c 39 to 772 1 to 734 exact     734/834
(88 %)
32 diff
(96.2 %id)
BU954883 mixed (pool of 40 RNAs) .c 39 to 491 1 to 453 exact     453/777
(58 %)
3 diff
(99.7 %id)
CK005473 brain/CNS, Human Brain - Frontal Cortex .c 39 to 678 1 to 640 G53R     640/641
(99 %)
4 diff
(99.4 %id)
DA065236 cerebellum .c 40 to 596 2 to 559 L24X P25A K26Q D27G I28H ... capped   558/558
(100 %)
1 diff
(99.9 %id)
DA397678 thalamus .c 40 to 631 2 to 593 exact capped   592/592
(100 %)
0 diff
(100 %id)
BQ217910 epithelioid carcinoma, Pancreas .c 40 to 700 1 to 664 exact     664/937
(70 %)
13 diff
(98.7 %id)
BU532860 mixed (pool of 40 RNAs) .c 40 to 715 1 to 693 exact     693/857
(80 %)
26 diff
(97.0 %id)
BM848491 myeloma .c 40 to 506 1 to 466 exact     466/466
(100 %)
5 diff
(99.0 %id)
CN347955 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 41 to 642 1 to 602 exact     602/602
(100 %)
2 diff
(99.7 %id)
AV716974   .c 41 to 454 1 to 413 K78T     413/413
(100 %)
10 diff
(97.6 %id)
BG505763 embryonal carcinoma, testis .c 41 to 816 1 to 775 exact     775/797
(97 %)
10 diff
(98.8 %id)
BF246905 brain, glioblastoma .c 41 to 643 1 to 595 F17L E18S Y19I R20D H21M ...     595/860
(69 %)
22 diff
(97.5 %id)
BF242872 bone marrow, from acute myelogenous leukemia .c 41 to 610 1 to 573 exact     573/573
(100 %)
8 diff
(98.7 %id)
BG532264 embryonal carcinoma, testis .c 41 to 483 1 to 443 exact     443/732
(60 %)
2 diff
(99.8 %id)
BG532702 embryonal carcinoma, testis .c 41 to 428 1 to 389 exact     389/389
(100 %)
2 diff
(99.5 %id)
BG611637 adenocarcinoma, Prostate .c 41 to 680 1 to 643 exact     643/739
(87 %)
10 diff
(98.7 %id)
BU532055 mixed (pool of 40 RNAs) .c 41 to 474 1 to 434 exact     434/469
(92 %)
3 diff
(99.4 %id)
BU934306 mixed (pool of 40 RNAs) .c 41 to 342 1 to 305       305/802
(38 %)
9 diff
(98.9 %id)
BU934675 mixed (pool of 40 RNAs) .c 41 to 760 1 to 721 exact     721/793
(90 %)
28 diff
(96.5 %id)
CB109320 Liver .c 41 to 624 1 to 584 exact     584/584
(100 %)
1 diff
(99.9 %id)
DB260426 uterus .c 41 to 597 2 to 559 L24X P25A K26Q D27G I28H ... capped   558/558
(100 %)
1 diff
(99.9 %id)
AK311769 tongue, tumor tissue .c 42 to 346 1 to 305 exact     305/305
(100 %)
0 diff
(100 %id)
BC070319 Prostate, adenocarcinoma. .c 42 to 813 1 to 772 exact available from MGC, AAA   772/772
(100 %)
2 diff
(99.8 %id)
BC070320 Pooled, 40 cell lines .c 42 to 816 1 to 775 exact available from MGC, AAA   775/775
(100 %)
2 diff
(99.8 %id)
CB127050 cervix, Uterine .c 42 to 623 1 to 582 exact     582/582
(100 %)
0 diff
(100 %id)
DW421149 Liver .c 42 to 322 18 to 298       281/298
(94 %)
7 diff
(97.7 %id)
DW422123 Liver .c 42 to 319 18 to 295       278/295
(94 %)
6 diff
(98.0 %id)
DW424062 Liver .c 42 to 308 23 to 290       268/290
(92 %)
14 diff
(95.2 %id)
DW425453 Liver .c 42 to 309 18 to 285       268/285
(94 %)
9 diff
(96.9 %id)
DW432374 Liver .c 42 to 289 19 to 266       248/266
(93 %)
10 diff
(96.3 %id)
DW443213 Liver .c 42 to 255 18 to 231       214/231
(92 %)
6 diff
(97.5 %id)
BJ990306 hepatoblastoma .c 42 to 623 1 to 582 exact     582/582
(100 %)
0 diff
(100 %id)
BJ996483 hepatoblastoma .c 42 to 552 1 to 511 exact     511/511
(100 %)
0 diff
(100 %id)
BG500591 adenocarcinoma, Prostate .c 42 to 800 1 to 762 exact     762/847
(89 %)
16 diff
(98.2 %id)
CB110861 Liver .c 42 to 581 1 to 540 exact     540/540
(100 %)
1 diff
(99.9 %id)
BM755418 stomach .c 42 to 250 1 to 209       209/209
(100 %)
2 diff
(99.1 %id)
BM833558 stomach .c 42 to 515 1 to 474 exact     474/474
(100 %)
0 diff
(100 %id)
BM782076 myeloma .c 42 to 713 1 to 672 exact     672/672
(100 %)
0 diff
(100 %id)
DA001317   .c 43 to 571 2 to 530 exact capped   529/529
(100 %)
0 diff
(100 %id)
DA090054 cerebellum .c 43 to 598 2 to 558 L24X P25A K26Q D27G I28H ... capped   557/557
(100 %)
1 diff
(99.9 %id)
DA459864 tongue, tumor tissue .c 43 to 603 2 to 563 L24X P25A K26Q D27G I28H ... capped   562/562
(100 %)
1 diff
(99.9 %id)
AL705112 human skeletal muscle .c 43 to 575 1 to 533 exact     533/533
(100 %)
0 diff
(100 %id)
DA573792   .c 43 to 607 2 to 567 P25A K26Q D27G I28H A29S ... capped   566/566
(100 %)
1 diff
(99.9 %id)
DA577704   .c 43 to 624 2 to 584 L24X P25A K26Q D27G I28H ... capped   583/583
(100 %)
1 diff
(99.9 %id)
DA579290   .c 43 to 582 2 to 542 L24X P25A K26Q D27G I28H ... capped   541/541
(100 %)
1 diff
(99.9 %id)
BG496009 lung, mucoepidermoid carcinoma .c 43 to 763 1 to 728 P77A     728/928
(78 %)
27 diff
(97.1 %id)
BG494877 lung, mucoepidermoid carcinoma .c 43 to 770 1 to 736 exact     736/736
(100 %)
23 diff
(96.9 %id)
DA606349   .c 43 to 597 2 to 557 D13* capped   556/556
(100 %)
4 diff
(99.3 %id)
BP431138   .c 43 to 456 1 to 415 exact     415/415
(100 %)
4 diff
(99.1 %id)
DA654747   .c 43 to 600 2 to 559 exact capped   558/558
(100 %)
0 diff
(100 %id)
DA701634   .c 43 to 527 2 to 486 exact capped   485/485
(100 %)
0 diff
(100 %id)
AU127144.
matches multiple genes
  .c 43 to 760 2 to 726 exact capped also hits gene CKS1BP3 725/802
(90 %)
10 diff
(98.8 %id)
AU133407.
matches multiple genes
  .c 43 to 800 2 to 758 D10N E18G capped also hits gene CKS1BP3 757/757
(100 %)
5 diff
(99.4 %id)
DA751981   .c 43 to 603 2 to 562 exact capped   561/561
(100 %)
0 diff
(100 %id)
AU134714.
matches multiple genes
placenta .c 43 to 770 2 to 738 exact capped also hits gene CKS1BP2, CKS1BP3 737/788
(93 %)
19 diff
(97.6 %id)
DA906246   .c 43 to 612 2 to 572 P25A K26Q D27G I28H A29S ... capped   571/571
(100 %)
1 diff
(99.9 %id)
DA910058   .c 43 to 560 2 to 519 exact capped   518/518
(100 %)
0 diff
(100 %id)
DA911286   .c 43 to 619 2 to 578 exact capped   577/577
(100 %)
0 diff
(100 %id)
DA914664   .c 43 to 593 2 to 553 L24X P25A K26Q D27G I28H ... capped   552/552
(100 %)
1 diff
(99.9 %id)
DA961979 Spleen .c 43 to 592 2 to 552 P25A K26Q D27G I28H A29S ... capped   551/551
(100 %)
1 diff
(99.9 %id)
DA996595   .c 43 to 575 2 to 534 exact capped   533/533
(100 %)
1 diff
(99.9 %id)
DB005218 breast, tumor tissue .c 43 to 502 2 to 464 D13* capped   463/463
(100 %)
3 diff
(99.4 %id)
DB045649 testis .c 43 to 605 2 to 566 D13* capped   565/565
(100 %)
2 diff
(99.7 %id)
DB260862 uterus .c 43 to 603 2 to 562 exact capped   561/561
(100 %)
1 diff
(99.9 %id)
CD051171 embryonic trophoblasts, made from WA01 stemcells .c 44 to 816 17 to 817 exact     801/956
(83 %)
49 diff
(94.9 %id)
AV692796 hepatocellular carcinoma .c 44 to 453 1 to 401 K34P T35I H36*     401/401
(100 %)
7 diff
(98.3 %id)
AV698081 hepatocellular carcinoma .c 44 to 453 1 to 401 K34P T35I H36*     401/401
(100 %)
5 diff
(98.8 %id)
DB489775 hypothalamus .c 44 to 513 1 to 467 D10E P33L Q49S Q50R S51V ...     467/467
(100 %)
11 diff
(97.7 %id)
DB492341 hypothalamus .c 44 to 520 1 to 477 exact     477/477
(100 %)
0 diff
(100 %id)
BJ990936 hepatoblastoma .c 44 to 623 1 to 580 exact     580/580
(100 %)
0 diff
(100 %id)
CK128682 embryonic stem cell, Embryonic stem cell, pooled H7 ES cell line,passage 22 .c 44 to 816 25 to 790 exact     766/795
(96 %)
16 diff
(98.0 %id)
BP428489   .c 44 to 374 1 to 333 exact     333/333
(100 %)
5 diff
(98.5 %id)
BM755451 stomach .c 44 to 362 1 to 319 G53A P74A     319/319
(100 %)
2 diff
(99.4 %id)
BM827960 stomach .c 44 to 603 1 to 560 exact     560/560
(100 %)
0 diff
(100 %id)
BM834491 stomach .c 44 to 643 1 to 600 exact     600/600
(100 %)
0 diff
(100 %id)
BM838283 stomach .c 44 to 670 1 to 627 exact     627/627
(100 %)
0 diff
(100 %id)
TI_154050072   .c 44 to 812 855 to 93 Y7T Y8I S9R D10T K11X ... AAA   763/987
(77 %)
7 diff
(99.3 %id)
DA047985   .c 45 to 627 2 to 585 L31P V32G P33L K34* capped   584/584
(100 %)
2 diff
(99.7 %id)
DA381958 thalamus .c 45 to 595 2 to 553 L24P P25A K26Q D27G I28H ... capped   552/552
(100 %)
1 diff
(99.9 %id)
DA442298 tongue, tumor tissue .c 45 to 641 2 to 600 D13* capped   599/599
(100 %)
2 diff
(99.7 %id)
DA477247   .c 45 to 582 2 to 539 exact capped   538/538
(100 %)
0 diff
(100 %id)
DA602829   .c 45 to 622 2 to 579 E15D capped   578/578
(100 %)
1 diff
(99.9 %id)
DA614146   .c 45 to 625 2 to 582 exact capped   581/581
(100 %)
0 diff
(100 %id)
DA665043   .c 45 to 605 2 to 562 exact capped   561/561
(100 %)
0 diff
(100 %id)
DA678888   .c 45 to 603 2 to 560 exact capped   559/559
(100 %)
1 diff
(99.9 %id)
AU126674   .c 45 to 509 2 to 469 exact capped   468/477
(98 %)
4 diff
(99.2 %id)
DA929019 small intestine .c 45 to 613 2 to 570 exact capped   569/569
(100 %)
0 diff
(100 %id)
DA952416 Spleen .c 45 to 607 2 to 565 L24X P25A K26Q D27G I28H ... capped   564/564
(100 %)
1 diff
(99.9 %id)
DB188635 liver, tumor tissue .c 45 to 619 2 to 576 exact capped   575/575
(100 %)
0 diff
(100 %id)
AU122890   .c 46 to 817 2 to 778 E15X S51X E63X capped   777/777
(100 %)
15 diff
(98.1 %id)
DA719102   .c 47 to 581 2 to 536 exact capped   535/535
(100 %)
1 diff
(99.9 %id)
BG488594 large cell carcinoma, lung .c 48 to 708 1 to 662 exact     662/663
(99 %)
3 diff
(99.6 %id)
BI200096 brain, neuroblastoma .c 48 to 811 1 to 763 P77A K79E AAA   763/763
(100 %)
22 diff
(97.2 %id)
CN347964 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 49 to 615 1 to 568 exact     568/568
(100 %)
1 diff
(99.9 %id)
W21526 lung .c 49 to 447 1 to 402 S2D H3K K4Q Q5I I6Y ...     402/402
(100 %)
15 diff
(96.3 %id)
BU935232 mixed (pool of 40 RNAs) .c 49 to 603 1 to 559 exact     559/845
(66 %)
18 diff
(97.9 %id)
DN995384 breast cancer, Mammary gland (cancer tissue) .c 49 to 752 8 to 711 exact     704/711
(99 %)
6 diff
(99.2 %id)
BF982202 duodenal adenocarcinoma, cell line, small intestine .c 50 to 811 1 to 754 exact     754/773
(97 %)
20 diff
(97.5 %id)
BG029609 breast, mammary adenocarcinoma, cell line .c 51 to 579 24 to 551 exact     528/551
(95 %)
6 diff
(99.0 %id)
BG330064 eye, retinoblastoma .c 51 to 817 1 to 758 exact AAA   758/758
(100 %)
19 diff
(97.5 %id)
BG470651 eye, retinoblastoma .c 51 to 819 1 to 769 exact AAA   769/769
(100 %)
10 diff
(98.7 %id)
BU596130 mixed (pool of 40 RNAs) .c 51 to 803 1 to 766 exact     766/840
(91 %)
22 diff
(97.4 %id)
BU852466 testis .c 51 to 601 1 to 557 T35I     557/832
(66 %)
15 diff
(98.2 %id)
DW430205 Liver .c 52 to 427 15 to 390 G53E     376/390
(96 %)
7 diff
(98.3 %id)
BM904100 lymph, lymphoma, cell line .c 52 to 813 1 to 763 exact     763/770
(99 %)
4 diff
(99.5 %id)
BU955404 mixed (pool of 40 RNAs) .c 52 to 799 1 to 761 exact     761/768
(99 %)
26 diff
(96.7 %id)
CB150749 cervix, Uterine .c 53 to 623 1 to 571 E15G G47V     571/571
(100 %)
2 diff
(99.7 %id)
AA037172.
matches multiple genes
senescent fibroblast .c 53 to 519 1 to 470 Q49X Q50R S51V Q52R G53D ...   also hits gene CKS1BP2 470/470
(100 %)
10 diff
(97.9 %id)
BQ064558 lymph, lymphoma, cell line .c 53 to 817 1 to 763 S9X D10G K11Q Y12I D13R ... AAA   763/763
(100 %)
4 diff
(99.5 %id)
BU927869 mixed (pool of 40 RNAs) .c 53 to 818 1 to 766 exact     766/767
(99 %)
6 diff
(99.3 %id)
CB157783 Liver .c 53 to 526 1 to 474 exact     474/474
(100 %)
0 diff
(100 %id)
BM799427 stomach .c 53 to 572 1 to 520 exact     520/520
(100 %)
1 diff
(99.9 %id)
TI_159706621   .c 53 to 817 867 to 107 Y7T Y8I S9R D10T K11N ... AAA   761/1040
(73 %)
7 diff
(99.4 %id)
CA307676 Alveolar Macrophage, lung .c 53 to 812 771 to 17 Y7T Y8I S9R D10T K11N ... AAA   755/758
(99 %)
7 diff
(99.1 %id)
BJ992551 hepatoblastoma .c 54 to 564 1 to 511 exact     511/511
(100 %)
0 diff
(100 %id)
W24270 lung .c 54 to 408 10 to 371 D27X Q49X Q50X Q52X W54X ...     361/371
(97 %)
17 diff
(95.5 %id)
BQ422309 embryonal carcinoma, cell line, testis .c 54 to 817 43 to 806 exact AAA   764/806
(94 %)
6 diff
(99.3 %id)
BQ217836 epithelioid carcinoma, Pancreas .c 54 to 818 770 to 7 exact tiling clone, Submitted on the opposite strand 764/784
(97 %)
2 diff
(99.8 %id)
BM836947 Ascites, stomach .c 54 to 631 1 to 578 exact     578/578
(100 %)
0 diff
(100 %id)
TI_149292276.
matches multiple genes
  .c 54 to 812 850 to 94 Y7T Y8I S9R D10T K11N ... AAA also hits gene CKS1BP2 757/915
(82 %)
10 diff
(99.0 %id)
DA028409   .c 55 to 623 2 to 570 exact capped   569/569
(100 %)
0 diff
(100 %id)
DA029599   .c 55 to 634 2 to 581 exact capped   580/580
(100 %)
0 diff
(100 %id)
BF972408 leiomyosarcoma cell line, uterus .c 55 to 748 1 to 693 exact     693/950
(72 %)
14 diff
(98.6 %id)
BG330709 large cell carcinoma, lung .c 55 to 683 1 to 633 Q5E D27G I28H A29S K30Q ...     633/853
(74 %)
15 diff
(98.3 %id)
BG332310 large cell carcinoma, lung .c 55 to 815 1 to 757 exact AAA   757/757
(100 %)
23 diff
(97.0 %id)
CB124126 Liver .c 55 to 713 1 to 659 exact     659/659
(100 %)
1 diff
(99.9 %id)
DB186383 liver, tumor tissue .c 55 to 643 2 to 590 exact capped   589/589
(100 %)
0 diff
(100 %id)
DA048384   .c 56 to 603 2 to 549 exact capped   548/548
(100 %)
0 diff
(100 %id)
DA279806 corpus callosum .c 56 to 546 2 to 492 exact capped   491/491
(100 %)
0 diff
(100 %id)
CN347952 embryonic stem cells, cell lines H1, H7, andH9 .c 56 to 781 13 to 738 exact     726/738
(98 %)
6 diff
(99.2 %id)
CN347957 embryonic stem cells, cell lines H1, H7, andH9 .c 56 to 726 13 to 683 exact     671/683
(98 %)
7 diff
(99.0 %id)
T88980 liver and spleen .c 56 to 439 1 to 392 K79E     392/445
(88 %)
15 diff
(96.7 %id)
H83186.
matches multiple genes
liver and spleen .c 56 to 436 1 to 386 exact   also hits gene sherdor 386/386
(100 %)
7 diff
(98.2 %id)
BG034403 breast, mammary adenocarcinoma, cell line .c 56 to 812 27 to 775 exact     749/791
(94 %)
29 diff
(96.4 %id)
BG390451 embryonal carcinoma, cell line, testis .c 56 to 809 1 to 750 exact     750/757
(99 %)
10 diff
(98.7 %id)
BM553976 amelanotic melanoma, cell line, skin .c 56 to 813 1 to 762 exact     762/1026
(74 %)
9 diff
(99.2 %id)
BQ891926 eye, retinoblastoma .c 56 to 817 1 to 762 exact AAA   762/762
(100 %)
1 diff
(99.9 %id)
AU122938   .c 56 to 657 2 to 608 exact capped   607/736
(82 %)
9 diff
(98.8 %id)
TI_151799869   .c 56 to 643 102 to 691 A29P V48G I66N L68A F69V ...     590/872
(67 %)
49 diff
(94.4 %id)
CR740574 Kidney .c 57 to 764 1 to 710 exact     710/710
(100 %)
3 diff
(99.6 %id)
BG255510 adenocarcinoma, cell line, Prostate .c 57 to 811 1 to 745 exact     745/766
(97 %)
20 diff
(97.4 %id)
BQ897062 ductal carcinoma, cell line, Pancreas .c 57 to 813 1 to 757 exact     757/757
(100 %)
0 diff
(100 %id)
CX759043 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 57 to 826 1 to 760 exact   Submitted on the opposite strand 760/852
(89 %)
15 diff
(98.3 %id)
TI_159705990   .c 57 to 817 850 to 93 S2R H3Q K4Q Q5N I6Y ... AAA   758/972
(77 %)
27 diff
(97.3 %id)
BF726787 eye, lens .c 58 to 519 1 to 462 exact     462/462
(100 %)
0 diff
(100 %id)
CN347956 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 58 to 799 1 to 742 exact     742/744
(99 %)
6 diff
(99.2 %id)
H03513 placenta .c 58 to 447 1 to 398 I6X Y7X fully sequenced,   398/398
(100 %)
12 diff
(97.0 %id)
BE382500 brain, neuroblastoma .c 58 to 767 1 to 701 exact     701/744
(94 %)
47 diff
(93.7 %id)
BM455618 lymph, lymphoma, cell line .c 58 to 705 29 to 678 exact     650/1064
(61 %)
18 diff
(98.4 %id)
BU169891 large cell carcinoma, lung .c 58 to 786 1 to 743 exact     743/886
(83 %)
17 diff
(98.1 %id)
TI_57166106   .c 58 to 818 33 to 795 exact     763/796
(95 %)
11 diff
(98.7 %id)
BM768074 Ascites, stomach .c 58 to 754 1 to 697 exact     697/697
(100 %)
0 diff
(100 %id)
BF972973 leiomyosarcoma cell line, uterus .c 59 to 761 1 to 701 F17L E18S Y19I R20D H21M ...     701/702
(99 %)
6 diff
(99.2 %id)
BG117853 adenocarcinoma, cell line, Liver .c 59 to 767 1 to 708 exact     708/1075
(65 %)
8 diff
(99.3 %id)
BG420487 Kidney, renal cell adenocarcinoma .c 59 to 790 1 to 733 F17L E18S Y19I R20D H21M ...     733/734
(99 %)
12 diff
(98.4 %id)
BG825240 muscle, rhabdomyosarcoma .c 59 to 710 1 to 655 exact     655/655
(100 %)
12 diff
(98.2 %id)
BG825309 muscle, rhabdomyosarcoma .c 59 to 818 1 to 761 exact     761/945
(80 %)
4 diff
(99.6 %id)
BI835444 pooled pancreas and spleen .c 59 to 818 1 to 762 exact     762/763
(99 %)
6 diff
(99.3 %id)
BM554479 amelanotic melanoma, cell line, skin .c 59 to 817 24 to 782 exact AAA   759/782
(97 %)
6 diff
(99.3 %id)
N86396   .c 59 to 311 1 to 248       248/248
(100 %)
7 diff
(97.2 %id)
BC007751 Muscle, rhabdomyosarcoma .c 60 to 817 1 to 758 exact available from MGC, AAA   758/758
(100 %)
0 diff
(100 %id)
CR595346 Neuroblastoma Cot 25-normalized .c 60 to 816 1 to 757 exact     757/757
(100 %)
0 diff
(100 %id)
BX325610 Neuroblastoma Cot 25-normalized .c 60 to 788 729 to 1 H3N D10B H21X D27X K30R ...     729/729
(100 %)
16 diff
(97.9 %id)
BX325611 Neuroblastoma Cot 25-normalized .c 60 to 748 1 to 691 exact     691/691
(100 %)
9 diff
(98.7 %id)
BX332080 Neuroblastoma Cot 25-normalized .c 60 to 752 1 to 693 exact     693/693
(100 %)
0 diff
(100 %id)
CD675011 eye, lens .c 60 to 581 1 to 522 S9A D13N D14N A29S V32A     522/522
(100 %)
13 diff
(97.6 %id)
CD675358 eye, lens .c 60 to 691 1 to 632 exact     632/632
(100 %)
0 diff
(100 %id)
AA001348.
matches multiple genes
liver and spleen .c 60 to 667 1 to 611 D27X Q49X Q50R S51V Q52R ...   also hits gene GTF2H4andVARS2 611/613
(99 %)
15 diff
(97.6 %id)
BF204311 muscle, rhabdomyosarcoma .c 60 to 785 1 to 715 F17L E18S Y19I R20D H21M ... AAA   715/740
(96 %)
17 diff
(97.8 %id)
BG576448 breast, mammary adenocarcinoma, cell line .c 60 to 776 1 to 722 exact     722/1190
(60 %)
8 diff
(99.4 %id)
BI094137 cervix .c 60 to 814 1 to 754 exact     754/774
(97 %)
8 diff
(99.0 %id)
CF619121 Pooled Chondrosarcoma Tumor cells .c 60 to 810 1 to 762 exact     762/902
(84 %)
21 diff
(97.7 %id)
BM853514 Ascites, stomach .c 60 to 580 1 to 521 exact     521/521
(100 %)
0 diff
(100 %id)
BI092816 cervix .c 61 to 715 1 to 652 F17L E18S Y19I R20D H21M ...     652/652
(100 %)
5 diff
(99.3 %id)
BU159095 epithelioid carcinoma, Pancreas .c 61 to 812 1 to 754 exact     754/866
(87 %)
3 diff
(99.7 %id)
CD299083 Blood vessels - aorta, basilar and artery .c 61 to 625 1 to 569 exact     569/784
(72 %)
24 diff
(97.0 %id)
TI_57151341   .c 61 to 814 35 to 790 exact     756/936
(80 %)
23 diff
(97.6 %id)
BE267636 Burkitt lymphoma, lymph .c 62 to 664 8 to 610 exact     603/610
(98 %)
6 diff
(99.1 %id)
BF038517 adenocarcinoma, ovary .c 62 to 808 1 to 750 exact     750/981
(76 %)
17 diff
(98.3 %id)
BF680183 Prostate .c 62 to 690 17 to 638 F17L E18S Y19I R20D H21M ...     622/820
(75 %)
17 diff
(98.0 %id)
BG396308 eye, retinoblastoma .c 62 to 719 1 to 657 exact     657/657
(100 %)
3 diff
(99.6 %id)
BI762049 pooled colon, kidney, stomach .c 62 to 814 1 to 755 exact     755/901
(83 %)
17 diff
(98.2 %id)
CD700829 normal nasopharynx .c 63 to 370 23 to 330 exact     308/330
(93 %)
6 diff
(98.2 %id)
DW427920 Liver .c 63 to 323 17 to 277       261/277
(94 %)
6 diff
(97.9 %id)
AA082436   .c 63 to 293 1 to 230   fully sequenced,   230/230
(100 %)
2 diff
(99.2 %id)
BM016021 breast, mammary adenocarcinoma, cell line .c 63 to 815 1 to 751 exact AAA   751/751
(100 %)
7 diff
(99.1 %id)
TI_59394400   .c 63 to 815 83 to 833 exact AAA   751/751
(100 %)
7 diff
(99.1 %id)
BM272371 Pancreas, Purified pancreatic islet .c 64 to 574 1 to 511 exact     511/511
(100 %)
3 diff
(99.5 %id)
AA081745   .c 64 to 675 1 to 604 H21X D27X     604/613
(98 %)
9 diff
(98.6 %id)
BE535736 cervix .c 64 to 714 1 to 647 exact     647/647
(100 %)
6 diff
(99.1 %id)
BQ883992 ductal carcinoma, cell line, Pancreas .c 64 to 817 1 to 754 exact AAA   754/754
(100 %)
0 diff
(100 %id)
BQ879967 ductal carcinoma, cell line, Pancreas .c 64 to 817 1 to 757 exact AAA   757/757
(100 %)
3 diff
(99.7 %id)
BQ689261 ductal carcinoma, cell line, Pancreas .c 64 to 818 1 to 756 exact     756/757
(99 %)
2 diff
(99.8 %id)
BM794992 Ascites, stomach .c 65 to 508 1 to 444 exact     444/444
(100 %)
1 diff
(99.8 %id)
TI_154062774   .c 67 to 818 877 to 139 S2Q H3Q K4I Q5T Y7G ...     739/1000
(73 %)
28 diff
(97.2 %id)
BE780204 eye, retinoblastoma .c 68 to 808 1 to 735 exact     735/735
(100 %)
15 diff
(98.0 %id)
BE786840 large cell carcinoma, lung .c 69 to 691 1 to 629 exact     629/745
(84 %)
18 diff
(97.6 %id)
BM974472 lung .c 69 to 812 757 to 17 Y7T Y8I S9R D10T K11N ... AAA   741/742
(99 %)
4 diff
(99.5 %id)
CN347959 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 70 to 690 1 to 621 exact     621/621
(100 %)
3 diff
(99.6 %id)
DN916779   .c 70 to 774 717 to 17 S2A H3Q K4Q Q5I I6Y ...     701/718
(97 %)
8 diff
(98.9 %id)
CA423129 cell lines, Chondrosarcoma .c 70 to 812 759 to 17 I6X AAA   743/746
(99 %)
2 diff
(99.8 %id)
W04339 lung .c 71 to 581 1 to 510 S2X H3T K4N Q5K I6F ... fully sequenced,   510/510
(100 %)
14 diff
(97.3 %id)
W80565 heart .c 71 to 409 1 to 348 Q5X D27X Q49X Q50R S51V ... fully sequenced,   348/348
(100 %)
4 diff
(98.9 %id)
BF033958 adenocarcinoma, ovary .c 71 to 578 1 to 511 K34*     511/512
(99 %)
4 diff
(99.3 %id)
BU631579 cell lines, Chondrosarcoma .c 71 to 816 760 to 19 Y7T Y8I S9R D10T K11N ... AAA   742/768
(96 %)
4 diff
(99.5 %id)
CR741012 liver and spleen .c 72 to 803 1 to 732 K78N     732/732
(100 %)
3 diff
(99.6 %id)
R98127 liver and spleen .c 72 to 545 1 to 475 S2R H3Q K4T Q5N I6L ... fully sequenced,   475/475
(100 %)
15 diff
(96.9 %id)
H72525 liver and spleen .c 72 to 405 1 to 337 H3X     337/337
(100 %)
6 diff
(98.3 %id)
H77575 liver and spleen .c 72 to 534 1 to 461 exact fully sequenced,   461/461
(100 %)
8 diff
(98.3 %id)
CB160430 Liver .c 72 to 462 1 to 391 exact     391/396
(98 %)
1 diff
(99.8 %id)
CN347950 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 73 to 818 1 to 746 exact     746/751
(99 %)
1 diff
(99.9 %id)
T55938.
matches multiple genes
Liver .c 73 to 524 1 to 456 H3T K4N Q5K I6F Y7T ...   also hits gene CKS1BP2, CKS1BP3 456/456
(100 %)
13 diff
(97.2 %id)
T77589 liver and spleen .c 73 to 502 1 to 448 S51X Q52S W54M V55G H56P ...     448/462
(96 %)
25 diff
(94.6 %id)
R99156.
matches multiple genes
liver and spleen .c 73 to 419 1 to 351 H3T K4N Q5K I6F Y7T ...   also hits gene RRS1andADHFE1andC8orf46 351/375
(93 %)
9 diff
(97.6 %id)
AA469909   .c 73 to 418 14 to 360 exact fully sequenced,   347/360
(96 %)
8 diff
(97.8 %id)
BE569085 bladder, carcinoma, cell line .c 73 to 597 1 to 525 exact     525/525
(100 %)
2 diff
(99.7 %id)
BM450355 eye, retinoblastoma .c 73 to 822 37 to 788 exact     752/788
(95 %)
11 diff
(98.7 %id)
BQ943822 carcinoma, cell line, Prostate .c 74 to 812 1 to 739 exact AAA   739/739
(100 %)
0 diff
(100 %id)
BE279271 choriocarcinoma, placenta .c 76 to 752 1 to 672 exact     672/673
(99 %)
24 diff
(96.5 %id)
BF026531 melanotic melanoma, skin .c 76 to 808 1 to 731 F17X     731/734
(99 %)
5 diff
(99.4 %id)
AW960304   .c 77 to 684 1 to 608 H3Y D13Y     608/610
(99 %)
19 diff
(96.9 %id)
CX165173 human embryonic stem cells differentiated toan early endodermal cell type .c 77 to 814 1 to 738 exact     738/738
(100 %)
0 diff
(100 %id)
BQ309195 breast .c 78 to 319 1 to 243       243/243
(100 %)
8 diff
(96.8 %id)
BE897037 melanotic melanoma, skin .c 78 to 769 1 to 687 F17L E18S Y19I R20D H21M ...     687/796
(86 %)
12 diff
(98.5 %id)
BQ935671 large cell carcinoma, lung .c 79 to 817 1 to 740 Y8* AAA   740/740
(100 %)
1 diff
(99.9 %id)
AF274941   .c 81 to 812 1 to 727 exact AAA   727/727
(100 %)
28 diff
(96.2 %id)
AF279897   .c 81 to 781 1 to 702 exact AAA   702/702
(100 %)
10 diff
(98.6 %id)
BC015629 Brain, neuroblastoma .c 81 to 812 1 to 732 exact available from MGC, AAA   732/732
(100 %)
0 diff
(100 %id)
BE261919 brain, neuroblastoma .c 81 to 790 1 to 701 F17L E18S Y19I R20D H21M ...     701/792
(88 %)
25 diff
(96.9 %id)
BE904738 epithelioid carcinoma, Pancreas .c 81 to 810 1 to 729 exact     729/815
(89 %)
22 diff
(97.4 %id)
BF309946 muscle, rhabdomyosarcoma .c 81 to 789 1 to 698 exact     698/827
(84 %)
14 diff
(98.4 %id)
BG336348 choriocarcinoma, placenta .c 81 to 812 1 to 726 F17L E18S Y19I R20D H21M ... AAA   726/726
(100 %)
9 diff
(98.8 %id)
BI225918 Burkitt lymphoma, lymph .c 81 to 818 1 to 743 exact     743/915
(81 %)
20 diff
(97.9 %id)
BI225812 Burkitt lymphoma, lymph .c 81 to 817 1 to 737 exact AAA   737/737
(100 %)
0 diff
(100 %id)
T29812 testis .c 82 to 389 1 to 309 L24X E40X     309/309
(100 %)
5 diff
(98.4 %id)
CK125957 embryonic stem cell, Embryonic stem cell, pooled H7 ES cell line,passage 22 .c 85 to 819 9 to 738 exact AAA   730/738
(98 %)
15 diff
(98.0 %id)
BE297387 muscle, rhabdomyosarcoma .c 86 to 807 1 to 718 exact     718/719
(99 %)
15 diff
(98.0 %id)
CN347963 embryonic stem cells, DMSO-treated H9 cellline .c 87 to 660 1 to 574 exact     574/574
(100 %)
0 diff
(100 %id)
R97470 liver and spleen .c 87 to 537 1 to 455 exact     455/456
(99 %)
12 diff
(97.4 %id)
BE883368 leiomyosarcoma, uterus .c 87 to 790 1 to 701 D27G I28H A29S K30Q L31A ...     701/702
(99 %)
15 diff
(97.9 %id)
AA476873 ovarian tumor, ovary .c 88 to 625 5 to 536 H3T K4N Q5K I6F Y7T ...     532/536
(99 %)
17 diff
(96.9 %id)
BP430353   .c 88 to 457 1 to 370 exact     370/370
(100 %)
3 diff
(99.2 %id)
BQ774070 Bone, Human Chondrosarcoma Cell Line .c 88 to 817 747 to 19 Y7T Y8I S9R D10T K11X ... AAA   729/732
(99 %)
2 diff
(99.8 %id)
AA292753.
matches multiple genes
  .c 92 to 666 1 to 571 Q49H Q50R S51V Q52R G53D ...   also hits gene CKS1BP3 571/571
(100 %)
4 diff
(99.3 %id)
BE903886 epithelioid carcinoma, Pancreas .c 92 to 808 1 to 731 K4T E16K F17*     731/764
(95 %)
40 diff
(94.8 %id)
CN347953 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 97 to 784 9 to 698 exact     690/698
(98 %)
8 diff
(98.9 %id)
BQ775783 Bone, Human Chondrosarcoma Cell Line .c 98 to 816 736 to 19 Y7T Y8I S9R D10T K11X ... AAA   718/729
(98 %)
2 diff
(99.8 %id)
X54941   .c 98 to 815 1 to 717 exact     717/717
(100 %)
2 diff
(99.8 %id)
CK824985 Pancreas, Purified pancreatic islet .c 99 to 600 1 to 502 exact   Submitted on the opposite strand 502/502
(100 %)
1 diff
(99.9 %id)
AA177048   .c 100 to 665 8 to 565 Y7X A29X     558/617
(90 %)
13 diff
(97.9 %id)
AI719075 colon .c 100 to 816 716 to 1 K4N Q5K I6F Y7T Y8I ...     716/716
(100 %)
4 diff
(99.5 %id)
BE314366 brain, neuroblastoma .c 100 to 690 1 to 591 exact     591/592
(99 %)
3 diff
(99.5 %id)
BE900753 choriocarcinoma, placenta .c 100 to 724 1 to 625 exact     625/625
(100 %)
1 diff
(99.9 %id)
AA908783 carcinoid, lung .c 101 to 815 716 to 1 K4Q Q5T I6N Y7L Y8L ...     716/716
(100 %)
12 diff
(98.4 %id)
BE269819 Burkitt lymphoma, lymph .c 101 to 754 1 to 651 G47A V48F Q49S Q50R S51V ...     651/652
(99 %)
7 diff
(99.0 %id)
BF035084 adenocarcinoma, ovary .c 101 to 809 1 to 708 exact     708/711
(99 %)
6 diff
(99.2 %id)
BE884804 leiomyosarcoma, uterus .c 102 to 809 1 to 715 exact     715/716
(99 %)
29 diff
(96.0 %id)
BT007196   .c 107 to 344 1 to 238       238/240
(99 %)
1 diff
(99.6 %id)
BE778624 eye, retinoblastoma .c 112 to 813 1 to 705       705/961
(73 %)
9 diff
(99.1 %id)
BQ225114 epithelioid carcinoma, Pancreas .c 112 to 812 1 to 702   AAA   702/702
(100 %)
2 diff
(99.8 %id)
CN347962 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 123 to 629 1 to 507       507/507
(100 %)
0 diff
(100 %id)
BQ774003 Bone, Human Chondrosarcoma Cell Line .c 126 to 812 705 to 19   AAA   687/688
(99 %)
1 diff
(99.9 %id)
BU620513 cell lines, Chondrosarcoma .c 131 to 817 705 to 19   AAA   687/687
(100 %)
0 diff
(100 %id)
W25243.
matches multiple genes
lung .c 132 to 567 1 to 444     Submitted on the opposite strand, also hits gene RGS10 444/445
(99 %)
16 diff
(96.5 %id)
AI935150 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .c 141 to 818 681 to 3       679/681
(99 %)
3 diff
(99.6 %id)
T99630.
matches multiple genes
liver and spleen .c 144 to 320 1 to 177     Submitted on the opposite strand, also hits gene CKS1BP2, CKS1BP3 177/177
(100 %)
3 diff
(98.4 %id)
BM009647 amelanotic melanoma, cell line, skin .c 144 to 817 1 to 668   AAA   668/668
(100 %)
9 diff
(98.7 %id)
TI_59384410   .c 145 to 817 58 to 724   AAA   667/667
(100 %)
8 diff
(98.9 %id)
BG104736 adrenal cortex carcinoma, cell line, adrenal gland .c 147 to 810 1 to 663       663/680
(97 %)
5 diff
(99.3 %id)
BM916900.
matches multiple genes
amelanotic melanoma, cell line, skin .c 147 to 722 1 to 576   tiling clone, also hits gene CKS1BP3 576/1249
(46 %)
5 diff
(99.6 %id)
BG104737 adrenal cortex carcinoma, cell line, adrenal gland .c 149 to 811 1 to 659   AAA   659/659
(100 %)
7 diff
(99.0 %id)
BU619396 cell lines, Chondrosarcoma .c 159 to 817 677 to 19   AAA   659/659
(100 %)
0 diff
(100 %id)
BU542279 carcinoma, cell line, Prostate .c 162 to 814 1 to 653       653/657
(99 %)
1 diff
(99.9 %id)
BU543432 carcinoma, cell line, Prostate .c 162 to 814 1 to 653       653/658
(99 %)
1 diff
(99.9 %id)
AA100926   .c 263 to 812 551 to 1   fully sequenced,   551/551
(100 %)
3 diff
(99.5 %id)
AA978045 2 pooled tumors (clear cell type), Kidney .c 296 to 818 523 to 3       521/523
(99 %)
0 diff
(100 %id)
AI911822 colon .c 317 to 811 493 to 1       493/497
(99 %)
22 diff
(95.6 %id)
AI336880 lung .c 336 to 814 479 to 1       479/482
(99 %)
9 diff
(98.2 %id)
AI185409 lung .c 337 to 818 473 to 2       472/496
(95 %)
0 diff
(100 %id)
AI085351 anaplastic oligodendroglioma, brain .c 338 to 817 480 to 1       480/480
(100 %)
20 diff
(95.9 %id)
AI078708 senescent fibroblast .c 341 to 812 488 to 13   AAA   476/476
(100 %)
9 diff
(98.2 %id)
AI346618 adenocarcinoma, colon .c 345 to 817 475 to 1       475/475
(100 %)
12 diff
(97.5 %id)
N92892 lung .c 352 to 817 466 to 1       466/466
(100 %)
2 diff
(99.6 %id)
AA765850 germinal center B cell .c 355 to 812 498 to 42   AAA   457/457
(100 %)
9 diff
(98.1 %id)
AV748036 Pituitary .c 357 to 739 1 to 370       370/374
(98 %)
17 diff
(95.5 %id)
R92790.
matches multiple genes
liver and spleen .c 368 to 809 459 to 1     also hits gene CKS1BP2, CKS1BP3 459/459
(100 %)
21 diff
(95.5 %id)
AW589407.
matches multiple genes
uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 376 to 659 282 to 1     also hits gene CKS1BP2, CKS1BP3 282/282
(100 %)
10 diff
(96.5 %id)
BF752229.
matches multiple genes
breast_normal .c 379 to 685 1 to 308     also hits gene CKS1BP2, CKS1BP3 308/309
(99 %)
14 diff
(95.5 %id)
W80435 heart .c 380 to 818 439 to 1   fully sequenced,   439/439
(100 %)
2 diff
(99.6 %id)
AA416871   .c 388 to 815 427 to 1   fully sequenced,   427/427
(100 %)
2 diff
(99.6 %id)
R97424.
matches multiple genes
liver and spleen .c 396 to 807 427 to 1     also hits gene CKS1BP3, TAF9 427/427
(100 %)
20 diff
(95.4 %id)
AA702275 liver and spleen .c 401 to 813 415 to 1       415/415
(100 %)
38 diff
(90.9 %id)
AW300758.
matches multiple genes
colon, moderately differentiated adenocarcinoma .c 418 to 659 242 to 1     also hits gene CKS1BP2 242/242
(100 %)
0 diff
(100 %id)
T99631.
matches multiple genes
liver and spleen .c 424 to 802 391 to 6     Submitted on the opposite strand, also hits gene CKS1BP2, CKS1BP3 386/391
(98 %)
0 diff
(100 %id)
BF149229 skin .c 428 to 741 318 to 1       318/318
(100 %)
4 diff
(98.8 %id)
H03431 placenta .c 429 to 816 394 to 1   fully sequenced,   394/394
(100 %)
8 diff
(98.0 %id)
CA311634 Human Lung Epithelial cells, lung .c 431 to 567 2 to 137     Submitted on the opposite strand 136/146
(93 %)
7 diff
(95.3 %id)
AA911952.
matches multiple genes
adenocarcinoma, colon .c 472 to 812 344 to 1     also hits gene CKS1BP2 344/404
(85 %)
29 diff
(92.9 %id)
BE220698.
matches multiple genes
malignant melanoma, metastatic to lymphnode, skin .c 492 to 659 168 to 1     also hits gene CKS1BP2 168/168
(100 %)
0 diff
(100 %id)
BE220715.
matches multiple genes
malignant melanoma, metastatic to lymphnode, skin .c 492 to 659 168 to 1     also hits gene CKS1BP2 168/168
(100 %)
0 diff
(100 %id)
H77576 liver and spleen .c 504 to 821 323 to 4   fully sequenced,   320/323
(99 %)
10 diff
(97.0 %id)
BM172363 choriocarcinoma, placenta .c 514 to 812 353 to 55   AAA Submitted on the opposite strand 299/301
(99 %)
36 diff
(88.1 %id)
R96823 liver and spleen .c 515 to 822 324 to 1   fully sequenced,   324/324
(100 %)
20 diff
(93.9 %id)
AI919512.
matches multiple genes
poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 523 to 659 138 to 1     also hits gene CKS1BP2, CKS1BP3 138/138
(100 %)
4 diff
(97.2 %id)
T55875.
matches multiple genes
Liver .c 532 to 611 80 to 1     also hits gene CKS1BP2, CKS1BP3 80/80
(100 %)
1 diff
(98.8 %id)
EC448047.
matches multiple genes
Prostate .c 552 to 643 1 to 92     also hits gene CKS1BP2, CKS1BP3 92/92
(100 %)
2 diff
(97.9 %id)
EC464038.
matches multiple genes
Prostate .c 553 to 643 1 to 89     also hits gene CKS1BP2, CKS1BP3 89/89
(100 %)
4 diff
(95.6 %id)
EC462927.
matches multiple genes
Prostate .c 563 to 643 17 to 97     also hits gene CKS1BP2, CKS1BP3 81/97
(83 %)
7 diff
(92.8 %id)
N74173 lung .c 577 to 817 241 to 1   fully sequenced,   241/241
(100 %)
2 diff
(99.2 %id)
GD149941   .c 681 to 780 100 to 1     Submitted on the opposite strand 100/102
(98 %)
1 diff
(99.1 %id)
T88922 liver and spleen .c 697 to 806 113 to 4       110/122
(90 %)
0 diff
(100 %id)
DA382080 thalamus .c 791 to 1354 2 to 565   tiling clone, capped   564/564
(100 %)
0 diff
(100 %id)
DA728074   .c 1204 to 1950 2 to 749   tiling clone, capped   748/749
(99 %)
4 diff
(99.5 %id)
BJ990307 hepatoblastoma .c 1471 to 2010 540 to 1   tiling clone,   540/540
(100 %)
0 diff
(100 %id)
DB311474 thalamus .c 2177 to 2705 530 to 1   tiling clone,   530/530
(100 %)
7 diff
(98.7 %id)
AL596850   .d 1 to 583 1 to 582 exact tiling clone,   582/582
(100 %)
1 diff
(99.9 %id)
BE893793 melanotic melanoma, skin .d 80 to 602 1 to 530   tiling clone,   530/792
(66 %)
14 diff
(98.3 %id)
NR_024163.1   .e 1 to 923 1 to 923 exact RefSeq, tiling clone, AAA   923/923
(100 %)
0 diff
(100 %id)
AU098793   .e 12 to 311 1 to 300       300/300
(100 %)
3 diff
(99.0 %id)
BG941229 blood .e 18 to 397 1 to 380       380/380
(100 %)
3 diff
(99.3 %id)
BQ438325 testis .e 37 to 829 1 to 810 exact     810/815
(99 %)
29 diff
(96.5 %id)
BU932637 mixed (pool of 40 RNAs) .e 37 to 731 1 to 705 exact     705/740
(95 %)
20 diff
(97.3 %id)
BU934158 mixed (pool of 40 RNAs) .e 37 to 816 1 to 785 exact     785/796
(98 %)
16 diff
(98.0 %id)
BX428992 B cells (Ramos cell line) .e 49 to 920 1 to 873 Q36X     873/873
(100 %)
7 diff
(99.2 %id)
BX432697 B cells (Ramos cell line) .e 49 to 920 1 to 872 exact     872/872
(100 %)
2 diff
(99.8 %id)
BX443013 B cells (Ramos cell line) .e 49 to 742 1 to 694 exact     694/694
(100 %)
3 diff
(99.6 %id)
CR607335 B cells (Ramos cell line) .e 50 to 920 1 to 871 exact     871/871
(100 %)
0 diff
(100 %id)
CB161621 Liver .e 50 to 636 1 to 587 exact     587/587
(100 %)
0 diff
(100 %id)
AK307066   .e 53 to 2129 1 to 2077 exact tiling clone,   2077/2077
(100 %)
3 diff
(99.9 %id)
DC301934   .e 53 to 635 1 to 583 exact     583/583
(100 %)
1 diff
(99.9 %id)
DC367799   .e 53 to 622 1 to 579 exact     579/579
(100 %)
12 diff
(98.0 %id)
BE569091 bladder, carcinoma, cell line .e 59 to 663 1 to 610 N29D     610/610
(100 %)
16 diff
(97.4 %id)
CB147972 Liver .e 68 to 505 1 to 439 exact     439/439
(100 %)
2 diff
(99.6 %id)
AA158070.
matches multiple genes
Pancreas .e 70 to 548 1 to 479 R2X S35E Q36V G37R W38D ...   also hits gene CKS1BP3 479/479
(100 %)
4 diff
(99.2 %id)
W44552.
matches multiple genes
senescent fibroblast .e 85 to 652 1 to 579 Q34H S35E Q36S G37R W38D ...   also hits gene CKS1BP3 579/580
(99 %)
17 diff
(97.1 %id)
AA292552 ovarian tumor, ovary .e 117 to 577 1 to 451 Q33H Q34R S35V Q36R G37D ... fully sequenced,   451/451
(100 %)
4 diff
(99.2 %id)
BM796229 Ascites, stomach .e 130 to 631 1 to 502 exact     502/502
(100 %)
0 diff
(100 %id)
AF274943   .e 181 to 924 1 to 744 exact AAA   744/744
(100 %)
4 diff
(99.5 %id)
AA405677 ovarian tumor, ovary .e 197 to 610 1 to 411 Q34R S35V Q36R G37D W38G ...     411/411
(100 %)
6 diff
(98.6 %id)
H03265.
matches multiple genes
placenta .e 268 to 682 1 to 425     also hits gene CKS1BP2, CKS1BP3 425/434
(97 %)
17 diff
(96.1 %id)
TI_57190590   .e 271 to 920 86 to 735       650/782
(83 %)
8 diff
(99.0 %id)
AI857576 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .e 272 to 920 650 to 2       649/650
(99 %)
2 diff
(99.7 %id)
BI859553 breast, mammary adenocarcinoma, cell line .e 272 to 920 1 to 649       649/674
(96 %)
8 diff
(98.9 %id)
AI204630   .e 275 to 920 643 to 3       641/697
(91 %)
14 diff
(98.0 %id)
BG179540 adenocarcinoma, cell line, Prostate .e 276 to 924 1 to 650       650/797
(81 %)
17 diff
(97.9 %id)
BG203468   .e 278 to 920 14 to 655       642/804
(79 %)
12 diff
(98.6 %id)
AA910644 pooled germ cell tumors .e 280 to 923 645 to 1       645/645
(100 %)
5 diff
(99.3 %id)
BM272167 Pancreas, Purified pancreatic islet .e 303 to 919 620 to 1       620/620
(100 %)
6 diff
(99.1 %id)
CA420091 Bone, Human Chondrosarcoma Cell Line .e 304 to 918 631 to 17   AAA   615/740
(83 %)
0 diff
(100 %id)
AI828996 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .e 309 to 924 617 to 3       615/617
(99 %)
2 diff
(99.7 %id)
AA282997 ovarian tumor, ovary .e 313 to 918 599 to 1       599/599
(100 %)
16 diff
(97.4 %id)
BU739593 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e 315 to 923 628 to 19   AAA   610/610
(100 %)
12 diff
(98.1 %id)
BM989407 lung, Metastatic Chondrosarcoma .e 320 to 923 622 to 19   AAA   604/617
(97 %)
0 diff
(100 %id)
AA527373 colon .e 336 to 920 585 to 1       585/585
(100 %)
6 diff
(99.0 %id)
TI_57189409   .e 336 to 918 50 to 629   AAA   580/580
(100 %)
4 diff
(99.4 %id)
BI860456 breast, mammary adenocarcinoma, cell line .e 337 to 918 1 to 579   AAA   579/579
(100 %)
4 diff
(99.4 %id)
BU600677 mixed (pool of 40 RNAs) .e 338 to 923 1 to 586       586/588
(99 %)
3 diff
(99.5 %id)
AW972459   .e 344 to 922 577 to 1     Submitted on the opposite strand 577/579
(99 %)
13 diff
(97.8 %id)
CA421981 Bone, Enchondroma cell line .e 348 to 918 589 to 19   AAA   571/571
(100 %)
0 diff
(100 %id)
CD677144 eye, Trabecular meshwork .e 351 to 918 1 to 568   AAA   568/568
(100 %)
0 diff
(100 %id)
AA621337.
matches multiple genes
  .e 356 to 920 569 to 6     also hits gene CKS1BP2, CKS1BP3 564/569
(99 %)
1 diff
(99.9 %id)
AI034317 parathyroid gland, parathyroid tumor .e 365 to 924 561 to 8       554/561
(98 %)
4 diff
(99.3 %id)
AI033892 parathyroid gland, parathyroid tumor .e 366 to 918 561 to 12   AAA   550/550
(100 %)
6 diff
(99.0 %id)
W95096.
matches multiple genes
liver and spleen .e 377 to 923 547 to 1     also hits gene CKS1BP1, rusku 547/554
(98 %)
9 diff
(98.4 %id)
AI459432 colon .e 382 to 918 537 to 1       537/537
(100 %)
3 diff
(99.5 %id)
AI423513 brain, glioblastoma (pooled) .e 398 to 918 520 to 1       520/527
(98 %)
8 diff
(98.5 %id)
AI991988 anaplastic oligodendroglioma, brain .e 409 to 919 509 to 1       509/509
(100 %)
6 diff
(98.9 %id)
AI312104 lung .e 418 to 924 508 to 2       507/508
(99 %)
0 diff
(100 %id)
AA740817 2 pooled tumors (clear cell type), Kidney .e 420 to 924 507 to 3       505/510
(99 %)
0 diff
(100 %id)
AI090262 uterus .e 421 to 923 502 to 1       502/509
(98 %)
1 diff
(99.9 %id)
AA701623 liver and spleen .e 432 to 923 492 to 1       492/492
(100 %)
5 diff
(99.0 %id)
AI139549 uterus .e 434 to 918 485 to 1       485/485
(100 %)
0 diff
(100 %id)
AI075239.
matches multiple genes
parathyroid gland, parathyroid tumor .e 435 to 922 494 to 7     also hits gene CKS1BP2, CKS1BP3 488/494
(98 %)
0 diff
(100 %id)
AA633648   .e 436 to 917 482 to 1       482/482
(100 %)
7 diff
(98.6 %id)
AA399239.
matches multiple genes
  .e 441 to 914 474 to 1     also hits gene ILVBL 474/474
(100 %)
3 diff
(99.4 %id)
BQ224856 large cell carcinoma, lung .e 445 to 918 1 to 474   AAA   474/474
(100 %)
0 diff
(100 %id)
BF793467 adrenal cortex carcinoma, cell line, adrenal gland .e 446 to 923 1 to 477   AAA   477/477
(100 %)
1 diff
(99.8 %id)
AU117372 whole embryo, mainly head .e 447 to 1224 2 to 780   tiling clone, capped   779/779
(100 %)
3 diff
(99.7 %id)
AI362835.
matches multiple genes
anaplastic oligodendroglioma, brain .e 448 to 924 479 to 3     also hits gene CKS1BP2, CKS1BP3 477/479
(99 %)
0 diff
(100 %id)
AI146955.
matches multiple genes
senescent fibroblast .e 453 to 920 473 to 6     also hits gene CKS1BP2, CKS1BP3 468/473
(98 %)
0 diff
(100 %id)
AI348243 adenocarcinoma, colon .e 457 to 918 461 to 1       461/461
(100 %)
1 diff
(99.8 %id)
BF514270   .e 464 to 918 470 to 16   AAA   455/455
(100 %)
0 diff
(100 %id)
AI494230 anaplastic oligodendroglioma, brain .e 474 to 923 450 to 1       450/450
(100 %)
3 diff
(99.4 %id)
AA962596 pooled germ cell tumors .e 480 to 918 439 to 1       439/439
(100 %)
0 diff
(100 %id)
AI278887 adenocarcinoma, colon .e 480 to 918 461 to 23   AAA   439/439
(100 %)
6 diff
(98.7 %id)
AI492600 anaplastic oligodendroglioma, brain .e 481 to 923 443 to 1       443/443
(100 %)
0 diff
(100 %id)
BG282572 adenocarcinoma, cell line, Prostate .e 481 to 923 1 to 440   AAA   440/440
(100 %)
3 diff
(99.4 %id)
DB559448 hypothalamus .e 482 to 923 1 to 443     Submitted on the opposite strand 443/443
(100 %)
3 diff
(99.4 %id)
DB563310 hypothalamus .e 482 to 923 1 to 442     Submitted on the opposite strand 442/442
(100 %)
1 diff
(99.8 %id)
AA001979 liver and spleen .e 489 to 923 437 to 1       437/437
(100 %)
3 diff
(99.4 %id)
N24127.
matches multiple genes
melanocyte .e 492 to 918 426 to 1     also hits gene CKS1BP3 426/426
(100 %)
2 diff
(99.6 %id)
H47725 liver and spleen .e 500 to 918 1 to 421   fully sequenced,   421/421
(100 %)
8 diff
(98.1 %id)
BF108854 pooled .e 508 to 918 411 to 1       411/411
(100 %)
4 diff
(99.1 %id)
H97534.
matches multiple genes
melanocyte .e 522 to 918 400 to 1     also hits gene CKS1BP3 400/402
(99 %)
6 diff
(98.6 %id)
AA954344 adenocarcinoma, colon .e 540 to 923 384 to 1       384/384
(100 %)
2 diff
(99.5 %id)
AA235549 ovarian tumor, ovary .e 547 to 923 377 to 1   fully sequenced,   377/377
(100 %)
1 diff
(99.8 %id)
BF792285 adrenal cortex carcinoma, cell line, adrenal gland .e 548 to 918 30 to 398   AAA   369/398
(92 %)
6 diff
(98.5 %id)
AI457100 carcinoid, lung .e 557 to 905 1 to 349     Submitted on the opposite strand 349/349
(100 %)
0 diff
(100 %id)
CB128885 Liver .e 562 to 924 1 to 363       363/371
(97 %)
2 diff
(99.5 %id)
N92845.
matches multiple genes
lung .e 565 to 923 360 to 1     also hits gene CKS1A 360/360
(100 %)
3 diff
(99.2 %id)
BM837473 Ascites, stomach .e 571 to 1065 1 to 495       495/495
(100 %)
14 diff
(97.2 %id)
N49682.
matches multiple genes
liver and spleen .e 574 to 924 351 to 1     also hits gene CKS1A 351/351
(100 %)
1 diff
(99.8 %id)
BU945201 mixed (pool of 40 RNAs) .e 582 to 920 1 to 339       339/372
(91 %)
3 diff
(99.2 %id)
BF793423 adrenal cortex carcinoma, cell line, adrenal gland .e 588 to 923 1 to 336   AAA   336/336
(100 %)
0 diff
(100 %id)
BX408846 B cells (Ramos cell line) .e 599 to 911 1 to 314       314/323
(97 %)
3 diff
(99.1 %id)
BE875563 large cell carcinoma, undifferentiated, lung .e 612 to 920 1 to 309       309/309
(100 %)
0 diff
(100 %id)
BX451762 B cells (Ramos cell line) .e 645 to 920 1 to 276       276/276
(100 %)
4 diff
(98.6 %id)
H48076 liver and spleen .e 661 to 917 261 to 1   fully sequenced,   261/261
(100 %)
1 diff
(99.7 %id)
R54704.
matches multiple genes
breast .e 692 to 910 225 to 8   fully sequenced, also hits gene CKS1BP3 218/225
(96 %)
0 diff
(100 %id)
BI494974.
matches multiple genes
cochlea, ear .e 692 to 923 1 to 232   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base), also hits gene sherdor 232/232
(100 %)
2 diff
(99.2 %id)
H79520.
matches multiple genes
liver and spleen .e 710 to 919 209 to 1     also hits gene CKS1BP1 209/209
(100 %)
2 diff
(99.1 %id)
BI055042 placenta_normal .e 735 to 1113 1 to 380       380/380
(100 %)
5 diff
(98.7 %id)
BU963295 mixed (pool of 40 RNAs) .e 760 to 918 1 to 159   AAA   159/159
(100 %)
1 diff
(99.4 %id)
AW059601   .e 769 to 922 1 to 154       154/155
(99 %)
2 diff
(98.8 %id)
BY999121.
matches multiple genes
  .e 769 to 922 1 to 154     Submitted on the opposite strand, also hits gene CKS1BP2, CKS1BP3 154/157
(98 %)
1 diff
(99.4 %id)
CF527788 placenta .e 770 to 923 172 to 19   AAA   154/154
(100 %)
2 diff
(98.8 %id)
H03266.
matches multiple genes
placenta .e 799 to 916 119 to 2     also hits gene CKS1BP2, CKS1BP3 118/124
(95 %)
0 diff
(100 %id)
BQ952668 large cell carcinoma, lung .e 815 to 1691 1 to 882   tiling clone,   882/963
(91 %)
13 diff
(98.7 %id)
BQ362643 stomach .e 841 to 1456 631 to 17       615/631
(97 %)
0 diff
(100 %id)
BF956943 nervous_normal .e 893 to 1400 512 to 5       508/512
(99 %)
7 diff
(98.7 %id)
CB130499 Liver .e 1045 to 1457 1 to 413       413/413
(100 %)
2 diff
(99.6 %id)
CF141759 CNCAP(3)T-225 cell line, Prostate .f 1 to 499 1 to 499   tiling clone,   499/499
(100 %)
4 diff
(99.2 %id)
TI_154172522   .f 8 to 614 89 to 700       612/1027
(59 %)
8 diff
(99.3 %id)
CD722826 eye, lacrimal gland .f 154 to 769 1 to 616       616/616
(100 %)
0 diff
(100 %id)
BM761948 myeloma .f 493 to 1169 1 to 676 exact tiling clone,   676/676
(100 %)
1 diff
(99.9 %id)
DW459283 Liver .g 1 to 138 12 to 149   tiling clone,   138/149
(92 %)
6 diff
(96.0 %id)
DW459530 Liver .g 1 to 136 12 to 147   tiling clone,   136/147
(92 %)
6 diff
(96.0 %id)
CB157561 Liver .g 136 to 761 1 to 626 exact tiling clone,   626/626
(100 %)
0 diff
(100 %id)
CB164683 Liver .g 136 to 753 1 to 618 exact     618/618
(100 %)
0 diff
(100 %id)
BU943527 mixed (pool of 40 RNAs) .g 170 to 872 1 to 707 exact     707/707
(100 %)
14 diff
(98.1 %id)
CN347954 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .g 231 to 906 1 to 676 exact tiling clone,   676/676
(100 %)
4 diff
(99.5 %id)
BM806391 leiomyosarcoma, uterus .h 1 to 318 1 to 318 exact tiling clone,   857/1195
(71 %)
40 diff
(96.7 %id)
BU598879 mixed (pool of 40 RNAs) .i 1 to 225 1 to 225 exact tiling clone,   753/755
(99 %)
15 diff
(98.1 %id)
CN270319 embryonic stem cells, DMSO-treated H9 cellline .j-u 1 to 620 1 to 620 exact tiling clone,   620/620
(100 %)
5 diff
(99.2 %id)
DB144367 thymus .j-u 4 to 522 2 to 520 exact tiling clone, capped   519/519
(100 %)
0 diff
(100 %id)
DW412879 Liver .j-u 13 to 319 16 to 322 exact     307/322
(95 %)
6 diff
(98.2 %id)
DB152857 thymus .j-u 18 to 506 2 to 490 exact capped   489/489
(100 %)
0 diff
(100 %id)
N78215.
matches multiple genes
liver and spleen .k 1 to 389 1 to 398 Q27X Q28R S29V Q30R G31D ... tiling clone, Possibly primed on the genome, locally A rich (30/35 A in genome downstream of last aligned base), also hits gene CKS1BP2 398/402
(99 %)
22 diff
(94.6 %id)
H78746.
matches multiple genes
liver and spleen P1.a-u 1 to 453 1 to 460 H7Y R11K N57Y S62P P73L ... tiling clone, also hits gene CKS1BP1 460/467
(98 %)
6 diff
(98.8 %id)
W95095.
matches multiple genes
liver and spleen P1.a-u 30 to 263 1 to 240   tiling clone, also hits gene CKS1BP1, rusku 240/243
(98 %)
19 diff
(92.2 %id)
H68268.
matches multiple genes
liver and spleen P2.a-u 137 to 213 1 to 77     also hits gene CKS1BP2, CKS1BP3 77/77
(100 %)
0 diff
(100 %id)
H03265.
matches multiple genes
placenta P2.a-u 143 to 557 1 to 425     also hits gene CKS1BP2, CKS1BP3 425/434
(97 %)
16 diff
(96.4 %id)
AA293140.
matches multiple genes
ovarian tumor, ovary P2.a-u 156 to 583 1 to 427     also hits gene CKS1BP2, CKS1BP3 427/427
(100 %)
4 diff
(99.1 %id)
BF910357.
matches multiple genes
uterus_tumor P2.a-u 158 to 613 11 to 464     also hits gene CKS1BP2, CKS1BP3 454/464
(97 %)
6 diff
(98.8 %id)
AI865147.
matches multiple genes
lymph node, lymphoma, follicular mixed small and largecell P2.a-u 161 to 640 479 to 1     also hits gene CKS1BP2, CKS1BP3 479/479
(100 %)
17 diff
(96.5 %id)
AW514667.
matches multiple genes
moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus P2.a-u 163 to 640 480 to 1     also hits gene CKS1BP2, CKS1BP3 480/484
(99 %)
3 diff
(99.4 %id)
AW613002.
matches multiple genes
colon, moderately-differentiated adenocarcinoma P2.a-u 207 to 640 433 to 1     also hits gene CKS1BP2, CKS1BP3 433/433
(100 %)
2 diff
(99.6 %id)
AA621337.
matches multiple genes
  P2.a-u 231 to 795 569 to 6     also hits gene CKS1BP2, CKS1BP3 564/569
(99 %)
0 diff
(100 %id)
BF507531.
matches multiple genes
  P2.a-u 273 to 706 449 to 16     also hits gene CKS1BP2, CKS1BP3 434/449
(96 %)
0 diff
(100 %id)
DW467182.
matches multiple genes
Liver P2.a-u 287 to 617 17 to 347     also hits gene CKS1BP2, CKS1BP3 331/347
(95 %)
6 diff
(98.3 %id)
EH348432.
matches multiple genes
  P2.a-u 292 to 367 1 to 76     also hits gene CKS1BP2, CKS1BP3 76/76
(100 %)
0 diff
(100 %id)
AU155591.
matches multiple genes
placenta P2.a-u 300 to 798 497 to 1     also hits gene CKS1BP2, CKS1BP3 497/498
(99 %)
13 diff
(97.4 %id)
AI075239.
matches multiple genes
parathyroid gland, parathyroid tumor P2.a-u 310 to 803 494 to 1     also hits gene CKS1BP2, CKS1BP3 494/494
(100 %)
5 diff
(99.0 %id)
AI362835.
matches multiple genes
anaplastic oligodendroglioma, brain P2.a-u 323 to 801 479 to 1     also hits gene CKS1BP2, CKS1BP3 479/479
(100 %)
3 diff
(99.4 %id)
AI146955.
matches multiple genes
senescent fibroblast P2.a-u 328 to 795 473 to 6     also hits gene CKS1BP2, CKS1BP3 468/473
(98 %)
0 diff
(100 %id)
R92790.
matches multiple genes
liver and spleen P2.a-u 349 to 790 459 to 1     also hits gene CKS1BP2, CKS1BP3 459/459
(100 %)
22 diff
(95.3 %id)
AW589407.
matches multiple genes
uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors P2.a-u 357 to 640 282 to 1     also hits gene CKS1BP2, CKS1BP3 282/282
(100 %)
11 diff
(96.1 %id)
BF752229.
matches multiple genes
breast_normal P2.a-u 360 to 666 1 to 308     also hits gene CKS1BP2, CKS1BP3 308/309
(99 %)
15 diff
(95.2 %id)
N59755.
matches multiple genes
liver and spleen P2.a-u 361 to 798 461 to 22   AAA Possibly primed on the genome, locally A rich (30/35 A in genome downstream of last aligned base), also hits gene CKS1BP2 440/440
(100 %)
12 diff
(97.3 %id)
AW300758.
matches multiple genes
colon, moderately differentiated adenocarcinoma P2.a-u 399 to 640 242 to 1     also hits gene CKS1BP2 242/242
(100 %)
0 diff
(100 %id)
T99631.
matches multiple genes
liver and spleen P2.a-u 405 to 783 391 to 6     Submitted on the opposite strand, also hits gene CKS1BP2, CKS1BP3 386/391
(98 %)
0 diff
(100 %id)
AA911952.
matches multiple genes
adenocarcinoma, colon P2.a-u 453 to 793 344 to 1     also hits gene CKS1BP2 344/404
(85 %)
30 diff
(92.6 %id)
BE220698.
matches multiple genes
malignant melanoma, metastatic to lymphnode, skin P2.a-u 473 to 640 168 to 1     also hits gene CKS1BP2 168/168
(100 %)
0 diff
(100 %id)
BE220715.
matches multiple genes
malignant melanoma, metastatic to lymphnode, skin P2.a-u 473 to 640 168 to 1     also hits gene CKS1BP2 168/168
(100 %)
0 diff
(100 %id)
H99552.
matches multiple genes
melanocyte P2.a-u 486 to 795 311 to 2     This clone was ignored, also hits gene CKS1BP2 310/311
(99 %)
0 diff
(100 %id)
AI919512.
matches multiple genes
poorly differentiated adenocarcinoma withsignet ring cell features, stomach P2.a-u 504 to 640 138 to 1     also hits gene CKS1BP2, CKS1BP3 138/138
(100 %)
4 diff
(97.2 %id)
T55875.
matches multiple genes
Liver P2.a-u 513 to 592 80 to 1     also hits gene CKS1BP2, CKS1BP3 80/80
(100 %)
1 diff
(98.8 %id)
EC448047.
matches multiple genes
Prostate P2.a-u 533 to 624 1 to 92     also hits gene CKS1BP2, CKS1BP3 92/92
(100 %)
2 diff
(97.9 %id)
EC464038.
matches multiple genes
Prostate P2.a-u 534 to 624 1 to 89     also hits gene CKS1BP2, CKS1BP3 89/89
(100 %)
4 diff
(95.6 %id)
AA037114.
matches multiple genes
senescent fibroblast P2.a-u 540 to 794 255 to 1     also hits gene CKS1BP2 255/410
(62 %)
2 diff
(99.6 %id)
EC462927.
matches multiple genes
Prostate P2.a-u 544 to 624 17 to 97     also hits gene CKS1BP2, CKS1BP3 81/97
(83 %)
6 diff
(93.9 %id)
BY999121.
matches multiple genes
  P2.a-u 644 to 800 1 to 157     Submitted on the opposite strand, also hits gene CKS1BP2, CKS1BP3 157/157
(100 %)
3 diff
(98.1 %id)
W72395.
matches multiple genes
heart P3.a-u 88 to 752 666 to 1     also hits gene CKS1BP3 666/666
(100 %)
20 diff
(97.0 %id)
BM916900.
matches multiple genes
amelanotic melanoma, cell line, skin P3.a-u 94 to 671 1 to 578   tiling clone, also hits gene CKS1BP3 578/1249
(46 %)
7 diff
(99.5 %id)
H98460.
matches multiple genes
melanocyte P3.a-u 100 to 465 1 to 374   tiling clone, also hits gene CKS1BP3 374/374
(100 %)
13 diff
(96.6 %id)
N31428.
matches multiple genes
melanocyte P3.a-u 100 to 434 1 to 334     also hits gene CKS1BP3 334/337
(99 %)
5 diff
(98.6 %id)
H68268.
matches multiple genes
liver and spleen P3.a-u 103 to 179 1 to 77     also hits gene CKS1BP2, CKS1BP3 77/77
(100 %)
0 diff
(100 %id)
H03265.
matches multiple genes
placenta P3.a-u 109 to 523 1 to 425     also hits gene CKS1BP2, CKS1BP3 425/434
(97 %)
16 diff
(96.4 %id)
AA293140.
matches multiple genes
ovarian tumor, ovary P3.a-u 122 to 549 1 to 427     also hits gene CKS1BP2, CKS1BP3 427/427
(100 %)
4 diff
(99.1 %id)
BF910357.
matches multiple genes
uterus_tumor P3.a-u 124 to 579 11 to 464     also hits gene CKS1BP2, CKS1BP3 454/464
(97 %)
6 diff
(98.8 %id)
AI865147.
matches multiple genes
lymph node, lymphoma, follicular mixed small and largecell P3.a-u 127 to 606 479 to 1     also hits gene CKS1BP2, CKS1BP3 479/479
(100 %)
17 diff
(96.5 %id)
AW514667.
matches multiple genes
moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus P3.a-u 129 to 606 480 to 1     also hits gene CKS1BP2, CKS1BP3 480/484
(99 %)
3 diff
(99.4 %id)
AW613002.
matches multiple genes
colon, moderately-differentiated adenocarcinoma P3.a-u 173 to 606 433 to 1     also hits gene CKS1BP2, CKS1BP3 433/433
(100 %)
2 diff
(99.6 %id)
AA621337.
matches multiple genes
  P3.a-u 197 to 761 569 to 6     also hits gene CKS1BP2, CKS1BP3 564/569
(99 %)
0 diff
(100 %id)
AU149836.
matches multiple genes
  P3.a-u 202 to 764 564 to 1     also hits gene CKS1BP3 564/566
(99 %)
20 diff
(96.5 %id)
AU154749.
matches multiple genes
  P3.a-u 209 to 764 557 to 1     also hits gene CKS1BP3 557/557
(100 %)
9 diff
(98.4 %id)
AA398727.
matches multiple genes
  P3.a-u 226 to 768 539 to 1     also hits gene CKS1BP3 539/551
(97 %)
15 diff
(97.3 %id)
R54703.
matches multiple genes
breast P3.a-u 233 to 567 1 to 336   fully sequenced, also hits gene CKS1BP3 336/336
(100 %)
6 diff
(98.3 %id)
BF507531.
matches multiple genes
  P3.a-u 239 to 672 449 to 16     also hits gene CKS1BP2, CKS1BP3 434/449
(96 %)
0 diff
(100 %id)
DW446531.
matches multiple genes
Liver P3.a-u 253 to 452 17 to 216     also hits gene CKS1BP3 200/216
(92 %)
6 diff
(97.3 %id)
DW467182.
matches multiple genes
Liver P3.a-u 253 to 583 17 to 347     also hits gene CKS1BP2, CKS1BP3 331/347
(95 %)
6 diff
(98.3 %id)
EH348432.
matches multiple genes
  P3.a-u 258 to 333 1 to 76     also hits gene CKS1BP2, CKS1BP3 76/76
(100 %)
0 diff
(100 %id)
W44561.
matches multiple genes
senescent fibroblast P3.a-u 260 to 775 527 to 5   tiling clone, also hits gene CKS1BP3 523/530
(98 %)
0 diff
(100 %id)
AU155591.
matches multiple genes
placenta P3.a-u 266 to 764 497 to 1     also hits gene CKS1BP2, CKS1BP3 497/498
(99 %)
13 diff
(97.4 %id)
AI075239.
matches multiple genes
parathyroid gland, parathyroid tumor P3.a-u 276 to 769 494 to 1     also hits gene CKS1BP2, CKS1BP3 494/494
(100 %)
5 diff
(99.0 %id)
AI362835.
matches multiple genes
anaplastic oligodendroglioma, brain P3.a-u 289 to 767 479 to 1     also hits gene CKS1BP2, CKS1BP3 479/479
(100 %)
3 diff
(99.4 %id)
AI146955.
matches multiple genes
senescent fibroblast P3.a-u 294 to 761 473 to 6     also hits gene CKS1BP2, CKS1BP3 468/473
(98 %)
0 diff
(100 %id)
R92790.
matches multiple genes
liver and spleen P3.a-u 315 to 756 459 to 1     also hits gene CKS1BP2, CKS1BP3 459/459
(100 %)
22 diff
(95.3 %id)
AW589407.
matches multiple genes
uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors P3.a-u 323 to 606 282 to 1     also hits gene CKS1BP2, CKS1BP3 282/282
(100 %)
11 diff
(96.1 %id)
BF752229.
matches multiple genes
breast_normal P3.a-u 326 to 632 1 to 308     also hits gene CKS1BP2, CKS1BP3 308/309
(99 %)
15 diff
(95.2 %id)
AA157451.
matches multiple genes
Pancreas P3.a-u 335 to 760 425 to 1     also hits gene CKS1BP3 425/425
(100 %)
4 diff
(99.1 %id)
R97424.
matches multiple genes
liver and spleen P3.a-u 343 to 754 427 to 1     also hits gene CKS1BP3, TAF9 427/427
(100 %)
21 diff
(95.1 %id)
AA459292.
matches multiple genes
ovarian tumor, ovary P3.a-u 347 to 764 455 to 38   AAA Possibly primed on the genome, locally A rich (20/22 A in genome downstream of last aligned base), also hits gene CKS1BP3 418/418
(100 %)
6 diff
(98.6 %id)
T99631.
matches multiple genes
liver and spleen P3.a-u 371 to 749 391 to 6     Submitted on the opposite strand, also hits gene CKS1BP2, CKS1BP3 386/391
(98 %)
0 diff
(100 %id)
R76789.
matches multiple genes
placenta P3.a-u 398 to 745 361 to 1     also hits gene CKS1BP3 361/369
(97 %)
17 diff
(95.4 %id)
AI919512.
matches multiple genes
poorly differentiated adenocarcinoma withsignet ring cell features, stomach P3.a-u 470 to 606 138 to 1     also hits gene CKS1BP2, CKS1BP3 138/138
(100 %)
4 diff
(97.2 %id)
T55875.
matches multiple genes
Liver P3.a-u 479 to 558 80 to 1     also hits gene CKS1BP2, CKS1BP3 80/80
(100 %)
1 diff
(98.8 %id)
EC448047.
matches multiple genes
Prostate P3.a-u 499 to 590 1 to 92     also hits gene CKS1BP2, CKS1BP3 92/92
(100 %)
2 diff
(97.9 %id)
EC464038.
matches multiple genes
Prostate P3.a-u 500 to 590 1 to 89     also hits gene CKS1BP2, CKS1BP3 89/89
(100 %)
4 diff
(95.6 %id)
EC462927.
matches multiple genes
Prostate P3.a-u 510 to 590 17 to 97     also hits gene CKS1BP2, CKS1BP3 81/97
(83 %)
7 diff
(92.8 %id)
R54704.
matches multiple genes
breast P3.a-u 537 to 758 221 to 1   fully sequenced, also hits gene CKS1BP3 221/221
(100 %)
3 diff
(98.7 %id)
BY999121.
matches multiple genes
  P3.a-u 610 to 766 1 to 157     Submitted on the opposite strand, also hits gene CKS1BP2, CKS1BP3 157/157
(100 %)
3 diff
(98.1 %id)
AV714168   Gene CKS1B, variant not shown         This clone was ignored    
AV714475   Gene CKS1B, variant not shown         This clone was ignored    
AV713469   Gene CKS1B, variant not shown         This clone was ignored    
AV687846 hepatocellular carcinoma Gene CKS1B, variant not shown         This clone was ignored    
AV685130 hepatocellular carcinoma Gene CKS1B, variant not shown         This clone was ignored    
BF205360 muscle, rhabdomyosarcoma Gene CKS1B, variant not shown         Suspected internal deletion, this clone was ignored    
BG249990 adenocarcinoma, cell line, Liver Gene CKS1B, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI