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Gene CKBTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
536 supporting clones for gene CKB back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BI771123 pooled lung and spleen .a 1 to 775 1 to 801   tiling clone,   801/817
(98 %)
59 diff
(92.8 %id)
TI_57179240   .a 1 to 775 89 to 889       801/905
(88 %)
65 diff
(92.9 %id)
BM757485 stomach .a 252 to 596 1 to 344   tiling clone,   344/344
(100 %)
4 diff
(98.9 %id)
AI770167 2 pooled tumors (clear cell type), Kidney .a 290 to 585 296 to 1   tiling clone,   296/296
(100 %)
1 diff
(99.7 %id)
EL951656 eyeball .a 691 to 1236 1 to 546   tiling clone,   546/546
(100 %)
3 diff
(99.5 %id)
AI435313 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1 to 402 402 to 1   tiling clone,   402/402
(100 %)
2 diff
(99.6 %id)
AI873234 pooled .b 171 to 402 234 to 1       234/234
(100 %)
3 diff
(98.8 %id)
DC303566 cerebellum .b 190 to 748 8 to 567   tiling clone,   560/560
(100 %)
1 diff
(99.9 %id)
BP213119 cerebrum .b 441 to 1020 1 to 580       580/580
(100 %)
0 diff
(100 %id)
TI_44166202   .b 459 to 1148 122 to 813       694/932
(74 %)
11 diff
(98.9 %id)
TI_45209414   .b 459 to 1221 82 to 838       757/838
(90 %)
13 diff
(98.5 %id)
TI_45212383   .b 459 to 1182 82 to 817       734/889
(82 %)
23 diff
(97.5 %id)
TI_45214952   .b 459 to 1148 105 to 794       690/794
(86 %)
13 diff
(98.4 %id)
BM172322 brain, hippocampus .b 465 to 1012 1 to 548       548/552
(99 %)
8 diff
(98.6 %id)
BG703065 brain, hippocampus .b 465 to 740 1 to 287       287/305
(94 %)
37 diff
(87.9 %id)
AU099229   .b 466 to 765 1 to 300       300/300
(100 %)
0 diff
(100 %id)
AU104790   .b 466 to 515 1 to 50       50/50
(100 %)
0 diff
(100 %id)
BP253239 Kidney .b 466 to 1047 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
AU104803   .b 467 to 516 1 to 50       50/50
(100 %)
0 diff
(100 %id)
BP382349 adipose tissue .b 467 to 1071 1 to 605       605/605
(100 %)
1 diff
(99.9 %id)
CB155552 brain .b 467 to 1041 1 to 575       575/575
(100 %)
0 diff
(100 %id)
BP210073 cerebellum .b 467 to 1049 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP213343 cerebrum .b 467 to 1045 1 to 579       579/579
(100 %)
0 diff
(100 %id)
DB477830 hippocampus .b 467 to 948 1 to 482       482/482
(100 %)
2 diff
(99.6 %id)
DB499098 hypothalamus .b 467 to 957 1 to 491       491/491
(100 %)
2 diff
(99.6 %id)
AU104789   .b 467 to 516 1 to 50       50/50
(100 %)
0 diff
(100 %id)
BP253055 Kidney .b 467 to 1056 1 to 590       590/590
(100 %)
1 diff
(99.9 %id)
AU104796   .b 467 to 516 1 to 50       50/50
(100 %)
0 diff
(100 %id)
BP260432 small intestine .b 467 to 1027 1 to 561       561/582
(96 %)
0 diff
(100 %id)
AU104797   .b 467 to 516 1 to 50       50/50
(100 %)
0 diff
(100 %id)
BP260736 small intestine .b 467 to 1048 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
AU104799   .b 467 to 516 1 to 50       50/50
(100 %)
0 diff
(100 %id)
BP261264 small intestine .b 467 to 1048 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
AW163707 brain, frontal lobe .b 467 to 976 1 to 510   fully sequenced,   510/510
(100 %)
3 diff
(99.5 %id)
NM_001823.3   .b 467 to 1897 1 to 1431 exact RefSeq,   1431/1431
(100 %)
0 diff
(100 %id)
BP347401 brain .b 467 to 1052 1 to 587       585/587
(99 %)
0 diff
(100 %id)
BP347556 brain .b 467 to 1049 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA006747   .b 468 to 1033 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
BP263651 small intestine .b 468 to 1046 1 to 579       579/579
(100 %)
0 diff
(100 %id)
TI_45214956   .b 468 to 1027 136 to 697       562/700
(80 %)
15 diff
(97.9 %id)
AK312282 cerebellum .b 469 to 1692 1 to 1224 K358R     1224/1224
(100 %)
6 diff
(99.6 %id)
BP208221 cerebellum .b 469 to 1051 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DB499084 hypothalamus .b 469 to 944 1 to 476       476/476
(100 %)
0 diff
(100 %id)
DB501194 hypothalamus .b 469 to 965 1 to 497       497/497
(100 %)
0 diff
(100 %id)
DB503017 hypothalamus .b 469 to 949 1 to 481       481/481
(100 %)
0 diff
(100 %id)
DB503066 hypothalamus .b 469 to 942 1 to 474       474/476
(99 %)
3 diff
(99.4 %id)
AK290101 subthalamic nucleus .b 470 to 1897 1 to 1428 exact     1428/1428
(100 %)
2 diff
(99.9 %id)
CB144312 brain .b 470 to 1040 1 to 571       571/571
(100 %)
0 diff
(100 %id)
CB156444 brain .b 470 to 1040 1 to 571       571/571
(100 %)
0 diff
(100 %id)
CB156470 brain .b 470 to 1038 1 to 569       569/569
(100 %)
0 diff
(100 %id)
BP208151 cerebellum .b 470 to 1048 1 to 579       579/579
(100 %)
0 diff
(100 %id)
BP208835 cerebellum .b 470 to 1049 1 to 580       580/580
(100 %)
0 diff
(100 %id)
BP209403 cerebellum .b 470 to 1051 1 to 582       582/582
(100 %)
0 diff
(100 %id)
AU104786   .b 470 to 519 1 to 50       50/50
(100 %)
0 diff
(100 %id)
DB456059 testis .b 470 to 970 1 to 501       501/501
(100 %)
1 diff
(99.9 %id)
DB456518 testis .b 470 to 983 1 to 514       514/515
(99 %)
4 diff
(99.3 %id)
DB459615 testis .b 470 to 944 1 to 475       475/475
(100 %)
0 diff
(100 %id)
DB477854 hippocampus .b 470 to 956 1 to 487       487/487
(100 %)
1 diff
(99.8 %id)
DB481197 hippocampus .b 470 to 909 1 to 440       440/440
(100 %)
0 diff
(100 %id)
DB483649 hippocampus .b 470 to 932 1 to 463       463/463
(100 %)
0 diff
(100 %id)
DB491923 hypothalamus .b 470 to 805 1 to 334       334/334
(100 %)
37 diff
(89.0 %id)
DB493500 hypothalamus .b 470 to 973 1 to 504       504/504
(100 %)
1 diff
(99.9 %id)
DB494492 hypothalamus .b 470 to 983 1 to 514       514/514
(100 %)
4 diff
(99.3 %id)
DB495784 hypothalamus .b 470 to 972 1 to 503       503/503
(100 %)
0 diff
(100 %id)
DB496481 hypothalamus .b 470 to 967 1 to 497       497/497
(100 %)
4 diff
(99.2 %id)
DB496529 hypothalamus .b 470 to 976 1 to 507       507/507
(100 %)
3 diff
(99.5 %id)
DB496712 hypothalamus .b 470 to 974 1 to 505       505/505
(100 %)
0 diff
(100 %id)
DB499941 hypothalamus .b 470 to 950 1 to 481       481/481
(100 %)
0 diff
(100 %id)
DB501421 hypothalamus .b 470 to 950 1 to 481       481/481
(100 %)
1 diff
(99.8 %id)
DB502194 hypothalamus .b 470 to 943 1 to 474       474/474
(100 %)
1 diff
(99.8 %id)
DB502533 hypothalamus .b 470 to 950 1 to 481       481/482
(99 %)
2 diff
(99.6 %id)
DB504491 hypothalamus .b 470 to 940 1 to 471       471/471
(100 %)
0 diff
(100 %id)
DB505788 hypothalamus .b 470 to 977 1 to 508       508/508
(100 %)
0 diff
(100 %id)
AU104787   .b 470 to 519 1 to 50       50/50
(100 %)
0 diff
(100 %id)
BP252666 Kidney .b 470 to 1051 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
AU104788   .b 470 to 519 1 to 50       50/50
(100 %)
0 diff
(100 %id)
BP253042 Kidney .b 470 to 1053 1 to 584       584/584
(100 %)
1 diff
(99.9 %id)
AU104791   .b 470 to 519 1 to 50       50/50
(100 %)
0 diff
(100 %id)
BP253761 Kidney .b 470 to 1051 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
AU104798   .b 470 to 519 1 to 50       50/50
(100 %)
0 diff
(100 %id)
BP260939 small intestine .b 470 to 1051 1 to 582       582/582
(100 %)
0 diff
(100 %id)
AU104800   .b 470 to 519 1 to 50       50/50
(100 %)
0 diff
(100 %id)
BP262598 small intestine .b 470 to 1051 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
TI_44165483   .b 470 to 1225 129 to 887       761/887
(85 %)
17 diff
(98.1 %id)
TI_44165891   .b 470 to 1268 149 to 949       801/958
(83 %)
28 diff
(97.1 %id)
TI_44169559   .b 470 to 1147 149 to 822       646/825
(78 %)
19 diff
(97.7 %id)
TI_44171045   .b 470 to 1027 125 to 689       565/696
(81 %)
36 diff
(94.9 %id)
TI_44171526   .b 470 to 1316 86 to 931       846/935
(90 %)
22 diff
(97.7 %id)
TI_44000524   .b 470 to 1041 134 to 709       576/709
(81 %)
16 diff
(97.8 %id)
TI_45209863   .b 470 to 1146 126 to 805       682/805
(84 %)
11 diff
(98.7 %id)
TI_45210905   .b 470 to 1146 89 to 778       695/822
(84 %)
39 diff
(95.3 %id)
TI_45211380   .b 470 to 1137 138 to 810       675/810
(83 %)
16 diff
(98.1 %id)
TI_45212498   .b 470 to 1137 94 to 756       663/757
(87 %)
16 diff
(97.9 %id)
TI_45215047   .b 470 to 1190 131 to 851       721/851
(84 %)
11 diff
(98.8 %id)
TI_45216603   .b 470 to 1272 127 to 935       810/937
(86 %)
38 diff
(96.0 %id)
TI_44342654   .b 470 to 1146 89 to 783       619/783
(79 %)
38 diff
(95.2 %id)
TI_44342920   .b 470 to 1219 101 to 847       748/847
(88 %)
12 diff
(98.6 %id)
AU104802   .b 470 to 519 1 to 50       50/50
(100 %)
0 diff
(100 %id)
BP331870 renal proximal tubule .b 470 to 1050 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
BP346511 brain .b 470 to 1051 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP348311 brain .b 470 to 1052 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA074863 cerebellum .b 471 to 1056 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA130411 alzheimer cortex .b 471 to 1031 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA131124 alzheimer cortex .b 471 to 1031 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA135024 alzheimer cortex .b 471 to 1034 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA356659 subthalamic nucleus .b 471 to 1041 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA364084 subthalamic nucleus .b 471 to 1033 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
BP223818 colon mucosa .b 471 to 1188 1 to 733       733/851
(86 %)
26 diff
(97.0 %id)
DA891518 rectum .b 471 to 1045 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA897914 skeletal muscle .b 471 to 1040 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA966854 stomach .b 471 to 1041 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB191074 lung, tumor tissue .b 471 to 1040 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
TI_44167537   .b 472 to 1033 64 to 618       557/618
(90 %)
15 diff
(97.6 %id)
TI_44171518   .b 472 to 1147 89 to 761       674/761
(88 %)
22 diff
(97.2 %id)
TI_45212304   .b 472 to 1259 89 to 899       728/913
(79 %)
27 diff
(97.1 %id)
TI_45212406   .b 472 to 1125 92 to 746       655/746
(87 %)
9 diff
(98.8 %id)
DB503481 hypothalamus .b 474 to 943 1 to 470       470/470
(100 %)
0 diff
(100 %id)
BM801979 eye, retinoblastoma .b 474 to 1195 1 to 722       722/1138
(63 %)
17 diff
(98.6 %id)
BC010002 Brain, neuroblastoma .b 475 to 1891 1 to 1417 exact available from MGC, AAA   1417/1417
(100 %)
2 diff
(99.9 %id)
CR595016 fetal brain .b 475 to 1859 1 to 1385 exact     1385/1385
(100 %)
0 diff
(100 %id)
CD580294 brain .b 475 to 674 1 to 201       201/740
(27 %)
5 diff
(99.4 %id)
CD580255 brain .b 475 to 1206 1 to 731   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 731/762
(95 %)
28 diff
(96.4 %id)
CD580419 brain .b 475 to 1200 35 to 761       727/1005
(72 %)
24 diff
(97.7 %id)
BC019281 Lung, small cell carcinoma .b 476 to 1889 1 to 1414 exact available from MGC, AAA   1414/1414
(100 %)
2 diff
(99.9 %id)
BQ428009 melanotic melanoma, skin .b 476 to 1324 1 to 859       859/892
(96 %)
11 diff
(98.8 %id)
CD579473 brain .b 476 to 1200 1 to 729       726/837
(86 %)
48 diff
(94.3 %id)
CR604078 adult brain .b 477 to 1818 1 to 1342 exact     1342/1342
(100 %)
0 diff
(100 %id)
BX423874 adult brain, brain .b 477 to 1396 1 to 905       905/951
(95 %)
22 diff
(97.7 %id)
BU184006 eye, retinoblastoma .b 477 to 1200 1 to 724       724/883
(81 %)
12 diff
(98.7 %id)
CV801860 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 477 to 1200 1 to 717       717/857
(83 %)
8 diff
(99.1 %id)
EL949770 eyeball .b 478 to 1073 11 to 611       601/611
(98 %)
15 diff
(97.6 %id)
BQ636912 eye, retina .b 478 to 1085 1 to 608       608/608
(100 %)
0 diff
(100 %id)
CD580423 brain .b 478 to 1200 19 to 741       723/928
(77 %)
23 diff
(97.6 %id)
CD580526 brain .b 478 to 1200 1 to 724       724/925
(78 %)
8 diff
(99.2 %id)
CD580273 brain .b 478 to 1288 1 to 811       811/811
(100 %)
8 diff
(99.1 %id)
CD580247 brain .b 478 to 1281 1 to 803       803/814
(98 %)
9 diff
(98.9 %id)
TI_154171311   .b 478 to 1153 80 to 760       681/1053
(64 %)
18 diff
(98.3 %id)
TI_154178409   .b 478 to 1013 91 to 630   AAA   538/612
(87 %)
20 diff
(96.8 %id)
CR599533 Neuroblastoma Cot 25-normalized .b 479 to 1828 1 to 1350 exact     1350/1350
(100 %)
0 diff
(100 %id)
CR618341 fetal brain .b 479 to 1869 1 to 1391 exact     1391/1391
(100 %)
0 diff
(100 %id)
AL527979 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .b 479 to 988 1 to 508       508/537
(94 %)
21 diff
(96.1 %id)
BX463365 adult brain, brain .b 479 to 1492 1 to 1008       1008/1008
(100 %)
38 diff
(96.3 %id)
BU850228 ovary, teratocarcinoma, cell line .b 479 to 1323 1 to 845       845/909
(92 %)
7 diff
(99.3 %id)
R88374   .b 480 to 579 1 to 99       99/99
(100 %)
1 diff
(99.0 %id)
BQ934959 sciatic nerve .b 480 to 1200 1 to 729       729/884
(82 %)
14 diff
(98.5 %id)
BC001190 Eye, retinoblastoma .b 482 to 1889 1 to 1408 exact available from MGC, AAA   1408/1408
(100 %)
2 diff
(99.9 %id)
CR593337 Neuroblastoma Cot 25-normalized .b 482 to 1885 1 to 1404 exact     1404/1404
(100 %)
0 diff
(100 %id)
CR625533 fetal brain .b 482 to 1855 1 to 1374 exact     1374/1374
(100 %)
0 diff
(100 %id)
BM047939 carcinoma, cell line, Prostate .b 482 to 1200 1 to 730       730/842
(86 %)
21 diff
(97.6 %id)
CX761832 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 483 to 1200 1 to 718     Submitted on the opposite strand 718/801
(89 %)
2 diff
(99.8 %id)
BC008323 Eye, retinoblastoma .b 484 to 1887 1 to 1404 exact available from MGC, AAA   1404/1404
(100 %)
2 diff
(99.9 %id)
CR604715 fetal brain .b 484 to 1859 1 to 1376 exact     1376/1376
(100 %)
0 diff
(100 %id)
EL955704 eyeball .b 484 to 939 25 to 481       457/481
(95 %)
6 diff
(98.8 %id)
BU542378 carcinoma, cell line, Prostate .b 484 to 1305 1 to 831       831/939
(88 %)
22 diff
(97.7 %id)
TI_57149135   .b 484 to 974 35 to 533       499/536
(93 %)
29 diff
(94.6 %id)
CR602332 adult brain .b 485 to 1871 1 to 1387 exact     1387/1387
(100 %)
0 diff
(100 %id)
CR602935 Neuroblastoma Cot 10-normalized .b 485 to 1860 1 to 1376 exact     1376/1376
(100 %)
0 diff
(100 %id)
CR614187 adult brain .b 485 to 1874 1 to 1390 exact     1390/1390
(100 %)
0 diff
(100 %id)
CR614656 fetal brain .b 485 to 1860 1 to 1376 exact     1376/1376
(100 %)
0 diff
(100 %id)
CR620989 fetal brain .b 485 to 1888 1 to 1404 exact     1404/1404
(100 %)
0 diff
(100 %id)
BF310434 brain, neuroblastoma .b 485 to 1206 1 to 715       715/1077
(66 %)
23 diff
(97.9 %id)
CF127987 Chondrosarcoma Lung Metastasis cell lines, lung .b 486 to 1201 1 to 716       716/716
(100 %)
0 diff
(100 %id)
TI_154193788   .b 486 to 1412 51 to 959       909/1013
(89 %)
66 diff
(93.5 %id)
BM920629 pooled brain, lung, testis .b 487 to 1321 1 to 840       840/1042
(80 %)
10 diff
(99.1 %id)
TI_57200606   .b 487 to 1148 61 to 733       675/780
(86 %)
47 diff
(94.0 %id)
BC004914 Lung, small cell carcinoma .b 490 to 1887 1 to 1398 exact available from MGC, AAA   1398/1398
(100 %)
2 diff
(99.9 %id)
BQ636522 eye, retina .b 490 to 1122 1 to 633       633/633
(100 %)
0 diff
(100 %id)
BE791120 lung, small cell carcinoma .b 490 to 1200 1 to 729       728/1120
(65 %)
45 diff
(96.0 %id)
BQ924133 leiomyosarcoma, uterus .b 492 to 1301 1 to 816       816/851
(95 %)
9 diff
(99.0 %id)
CN352677 embryonic stem cells, cell lines H1, H7, andH9 .b 493 to 1192 1 to 701       701/701
(100 %)
3 diff
(99.6 %id)
EL955684 eyeball .b 495 to 1078 23 to 607       585/612
(95 %)
10 diff
(98.4 %id)
BM706667 eye, optic nerve .b 495 to 1129 9 to 643       635/643
(98 %)
6 diff
(99.1 %id)
CR604286 fetal brain .b 497 to 1891 1 to 1395 exact tiling clone,   1395/1395
(100 %)
0 diff
(100 %id)
BX429611 adult brain, brain .b 497 to 1192 696 to 1       696/696
(100 %)
3 diff
(99.6 %id)
BE907374 epithelioid carcinoma, Pancreas .b 503 to 1200 1 to 689       694/717
(96 %)
26 diff
(96.4 %id)
L47647   .b 504 to 1889 1 to 1386 exact     1386/1386
(100 %)
3 diff
(99.8 %id)
TI_151789403   .b 522 to 1389 77 to 930       859/930
(92 %)
22 diff
(97.7 %id)
AI929171 brain, frontal lobe .b 523 to 1162 1 to 639       639/643
(99 %)
6 diff
(99.1 %id)
M16451 brain and placenta .b 524 to 1888 1 to 1366 E41D L42V G98R G99R E105D ...     1366/1372
(99 %)
21 diff
(98.5 %id)
TI_44171145   .b 528 to 1216 188 to 880       697/880
(79 %)
28 diff
(96.9 %id)
CD612887   .b 535 to 619 86 to 3       84/86
(97 %)
0 diff
(100 %id)
BE799766 lung, small cell carcinoma .b 536 to 1200 117 to 781       663/785
(84 %)
13 diff
(98.4 %id)
M16364 lung .b 539 to 1888 1 to 1352 D78G R130G     1352/1360
(99 %)
13 diff
(99.1 %id)
BF932919 nervous_tumor .b 542 to 826 282 to 3     Submitted on the opposite strand 280/282
(99 %)
5 diff
(98.3 %id)
CR618535 fetal brain .b 542 to 1889 1 to 1348 exact     1348/1348
(100 %)
0 diff
(100 %id)
BX449971 brain, fetal brain .b 543 to 1534 1 to 987       987/987
(100 %)
10 diff
(99.0 %id)
TI_1948076878   .b 546 to 1230 137 to 824   fully sequenced,   688/824
(83 %)
8 diff
(99.1 %id)
TI_1948077045   .b 546 to 1230 133 to 818   fully sequenced,   686/818
(83 %)
8 diff
(99.1 %id)
TI_1948077217   .b 546 to 1230 137 to 823   fully sequenced,   687/823
(83 %)
10 diff
(98.8 %id)
TI_1948077386   .b 546 to 1058 139 to 652   fully sequenced,   514/652
(78 %)
8 diff
(98.8 %id)
TI_1948093233   .b 546 to 1321 143 to 926       784/1488
(52 %)
33 diff
(97.8 %id)
CR542268   .b 547 to 1692 1 to 1146 P144Q     1146/1146
(100 %)
3 diff
(99.8 %id)
BX388717 Neuroblastoma Cot 25-normalized .b 547 to 1193 649 to 1       649/649
(100 %)
18 diff
(97.3 %id)
AW859009 colon .b 557 to 895 340 to 2       339/346
(97 %)
1 diff
(99.8 %id)
BX461044 brain, fetal brain .b 558 to 1490 3 to 946       957/946
(101 %)
58 diff
(93.9 %id)
CR618760 Neuroblastoma Cot 10-normalized .b 561 to 1874 1 to 1314       1314/1314
(100 %)
0 diff
(100 %id)
TI_149293534   .b 563 to 1434 53 to 917     Submitted on the opposite strand 867/1058
(81 %)
31 diff
(97.1 %id)
TI_154176548   .b 570 to 1116 80 to 623       544/546
(99 %)
6 diff
(99.0 %id)
CD242931 brain, Pituitary .b 571 to 1304 1 to 748       748/917
(81 %)
18 diff
(98.1 %id)
BU932063 ovary, teratocarcinoma, cell line .b 589 to 1446 1 to 863       863/907
(95 %)
11 diff
(98.8 %id)
BG979452 colon_normal .b 598 to 986 391 to 2       390/393
(99 %)
0 diff
(100 %id)
BM048182 carcinoma, cell line, Prostate .b 604 to 1382 1 to 783       783/947
(82 %)
6 diff
(99.4 %id)
BU541183 carcinoma, cell line, Prostate .b 611 to 1472 1 to 871       871/878
(99 %)
13 diff
(98.6 %id)
BG981547 colon_normal .b 623 to 842 219 to 1       219/219
(100 %)
5 diff
(97.8 %id)
AW884174 ovary .b 630 to 921 291 to 2       290/306
(94 %)
4 diff
(98.7 %id)
TI_154171938   .b 636 to 1078 86 to 530       445/1227
(36 %)
5 diff
(99.6 %id)
DB482142 hippocampus .b 640 to 1126 1 to 487       487/487
(100 %)
0 diff
(100 %id)
TI_154163036   .b 642 to 1360 78 to 807       728/732
(99 %)
39 diff
(94.7 %id)
BC111085 PCR rescued clones .b 648 to 1105 473 to 16     Submitted on the opposite strand 458/483
(94 %)
2 diff
(99.6 %id)
BX408962 adult brain, brain .b 649 to 995 347 to 1       347/373
(93 %)
16 diff
(95.8 %id)
BQ717761 sympathetic trunk .b 657 to 1522 12 to 877       866/971
(89 %)
28 diff
(97.2 %id)
TI_154170473   .b 664 to 1206 91 to 632       542/731
(74 %)
9 diff
(98.8 %id)
EC464142 Prostate .b 683 to 786 1 to 103       103/103
(100 %)
2 diff
(98.1 %id)
BM721647 eye, fetal eye .b 694 to 1088 1 to 395       395/395
(100 %)
0 diff
(100 %id)
BQ438306 leiomyosarcoma, uterus .b 714 to 1454 1 to 748       748/796
(93 %)
10 diff
(98.8 %id)
BF768314 colon_normal .b 718 to 855 138 to 4     Submitted on the opposite strand 135/155
(87 %)
0 diff
(100 %id)
BQ943624 carcinoma, cell line, Prostate .b 721 to 1609 1 to 893       893/893
(100 %)
7 diff
(99.3 %id)
CR609423 fetal brain .b 735 to 1880 1 to 1146       1146/1146
(100 %)
0 diff
(100 %id)
BI033557 nervous_normal .b 742 to 895 23 to 175       153/185
(82 %)
8 diff
(95.7 %id)
BX423019 adult brain, brain .b 744 to 1776 1092 to 68       1025/1100
(93 %)
16 diff
(98.6 %id)
TI_59380468   .b 758 to 1501 62 to 806       745/745
(100 %)
3 diff
(99.6 %id)
TI_57182833   .b 762 to 1542 77 to 859       783/888
(88 %)
24 diff
(97.3 %id)
TI_45213113   .b 768 to 1380 120 to 732       613/732
(83 %)
7 diff
(99.1 %id)
DB500669 hypothalamus .b 781 to 1242 1 to 462       462/462
(100 %)
0 diff
(100 %id)
BM720216 eye, fetal eye .b 785 to 1233 1 to 449       449/449
(100 %)
1 diff
(99.8 %id)
BF339980 brain, glioblastoma with EGFR amplification .b 787 to 1522 1 to 736       736/769
(95 %)
8 diff
(99.0 %id)
BX430092 adult brain, brain .b 794 to 1277 484 to 1       484/484
(100 %)
9 diff
(98.2 %id)
BM083354 eye, retinoblastoma .b 795 to 1442 1 to 649       649/649
(100 %)
7 diff
(99.0 %id)
EC446906 Prostate .b 804 to 908 106 to 2       105/106
(99 %)
0 diff
(100 %id)
BU542223 carcinoma, cell line, Prostate .b 807 to 1606 1 to 805       805/876
(91 %)
8 diff
(99.1 %id)
AL527978 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .b 811 to 1854 1026 to 1       1026/1057
(97 %)
25 diff
(97.7 %id)
BE382663 brain, neuroblastoma .b 825 to 1417 1 to 593       593/593
(100 %)
0 diff
(100 %id)
BU599113 mixed (pool of 40 RNAs) .b 826 to 1530 1 to 728       728/873
(83 %)
51 diff
(94.2 %id)
TI_57150314   .b 831 to 1640 60 to 871       812/871
(93 %)
10 diff
(98.9 %id)
BF945166 nervous_normal .b 836 to 984 151 to 3     Submitted on the opposite strand 149/164
(90 %)
6 diff
(96.4 %id)
BX428956 brain, fetal brain .b 842 to 1861 1017 to 1       1017/1024
(99 %)
19 diff
(98.2 %id)
AW608549 leiomios .b 861 to 1179 323 to 1       323/329
(98 %)
8 diff
(97.6 %id)
CD612890   .b 875 to 1406 545 to 14       532/545
(97 %)
2 diff
(99.7 %id)
CD612892   .b 875 to 1406 544 to 13       532/544
(97 %)
1 diff
(99.9 %id)
BQ958567 carcinoma, cell line, Prostate .b 876 to 1764 1 to 896       896/897
(99 %)
14 diff
(98.5 %id)
BU542487 carcinoma, cell line, Prostate .b 876 to 1765 1 to 896       896/897
(99 %)
11 diff
(98.8 %id)
AW578066 colon_normal .b 878 to 1274 398 to 4       395/399
(98 %)
0 diff
(100 %id)
BX423873 adult brain, brain .b 892 to 1818 920 to 1       920/985
(93 %)
19 diff
(98.1 %id)
BX450119 adult brain, brain .b 892 to 1661 978 to 211   AAA   768/768
(100 %)
11 diff
(98.6 %id)
TI_227712518   .b 898 to 1889 1082 to 98   AAA   985/1022
(96 %)
30 diff
(97.1 %id)
BX432909 adult brain, brain .b 899 to 1856 954 to 1       954/957
(99 %)
19 diff
(98.1 %id)
BQ639475 eye, retina .b 914 to 1542 1 to 629       629/629
(100 %)
0 diff
(100 %id)
L49086 retinal fovea .b 921 to 1095 176 to 1       176/176
(100 %)
5 diff
(97.2 %id)
BM728605 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 922 to 1580 1 to 659       659/659
(100 %)
0 diff
(100 %id)
BF038095 adenocarcinoma, ovary .b 923 to 1701 1 to 773       773/862
(89 %)
12 diff
(98.7 %id)
EL954242 eyeball .b 926 to 1435 1 to 508       508/508
(100 %)
9 diff
(98.3 %id)
BX343562.
matches multiple genes
Neuroblastoma Cot 25-normalized .b 937 to 1776 900 to 62     also hits gene PTCD2 820/900
(91 %)
21 diff
(97.7 %id)
BE740676 adenocarcinoma cell line, ovary .b 941 to 1667 1 to 721       721/895
(80 %)
7 diff
(99.3 %id)
AW163104 brain, frontal lobe .b 946 to 1265 320 to 1   fully sequenced,   320/320
(100 %)
0 diff
(100 %id)
BM690883 eye, RPE and Choroid .b 952 to 1544 8 to 600   fully sequenced,   593/600
(98 %)
6 diff
(99.0 %id)
BQ338879 nervous_normal .b 955 to 1192 242 to 4       239/242
(98 %)
1 diff
(99.6 %id)
CU453927 epidermis .b 996 to 1611 626 to 11     Submitted on the opposite strand 616/626
(98 %)
1 diff
(99.9 %id)
TI_1948077387   .b 997 to 1691 819 to 124   fully sequenced,   696/819
(84 %)
1 diff
(99.9 %id)
BX463364 adult brain, brain .b 1008 to 1772 766 to 1       766/861
(88 %)
45 diff
(94.8 %id)
R14011 whole brain .b 1026 to 1127 1 to 102       102/102
(100 %)
4 diff
(96.1 %id)
TI_57147595   .b 1040 to 1745 31 to 735       705/735
(95 %)
10 diff
(98.7 %id)
EL955061 eyeball .b 1054 to 1554 1 to 501       501/501
(100 %)
0 diff
(100 %id)
CX788629 human embryonic stem cells .b 1056 to 1885 838 to 10     Submitted on the opposite strand 829/838
(98 %)
0 diff
(100 %id)
BQ884346 sciatic nerve .b 1060 to 1514 4 to 458       455/950
(47 %)
15 diff
(98.5 %id)
EL955480 eyeball .b 1072 to 1732 18 to 675       658/675
(97 %)
15 diff
(97.8 %id)
TI_57201315   .b 1081 to 1820 19 to 756       738/756
(97 %)
8 diff
(99.0 %id)
TI_57149970   .b 1084 to 1832 21 to 767   AAA   747/865
(86 %)
30 diff
(96.6 %id)
EC460794 Prostate .b 1085 to 1178 94 to 1       94/94
(100 %)
0 diff
(100 %id)
EC577266 Prostate .b 1085 to 1184 100 to 1       100/100
(100 %)
9 diff
(91.0 %id)
TI_153954562   .b 1092 to 1595 90 to 594       505/1156
(43 %)
33 diff
(97.2 %id)
BF945422 nervous_normal .b 1095 to 1492 402 to 4     Submitted on the opposite strand 399/417
(95 %)
4 diff
(99.1 %id)
BF945433 nervous_normal .b 1095 to 1476 423 to 43     Submitted on the opposite strand 381/438
(86 %)
3 diff
(99.4 %id)
BF945443 nervous_normal .b 1095 to 1478 399 to 18     Submitted on the opposite strand 382/415
(92 %)
1 diff
(99.8 %id)
BF945444 nervous_normal .b 1095 to 1478 416 to 35     Submitted on the opposite strand 382/431
(88 %)
2 diff
(99.6 %id)
TI_149302532   .b 1100 to 1887 867 to 87   AAA   781/921
(84 %)
20 diff
(97.9 %id)
AI940519 colon .b 1106 to 1259 154 to 1       154/154
(100 %)
0 diff
(100 %id)
AW579055 colon .b 1106 to 1481 377 to 1       377/377
(100 %)
5 diff
(98.7 %id)
AW604994 colon .b 1106 to 1487 382 to 3       380/382
(99 %)
2 diff
(99.5 %id)
AW751718 colon .b 1106 to 1286 201 to 24       178/201
(88 %)
12 diff
(94.1 %id)
AW604964 colon .b 1107 to 1513 420 to 13       408/421
(96 %)
5 diff
(98.9 %id)
AW375054 colon .b 1109 to 1214 106 to 1       106/109
(97 %)
0 diff
(100 %id)
TI_57152539   .b 1113 to 1658 66 to 611       546/611
(89 %)
7 diff
(98.9 %id)
AW374927 colon .b 1119 to 1250 146 to 14       133/146
(91 %)
5 diff
(96.6 %id)
BU180638 melanotic melanoma, cell line, skin .b 1127 to 1722 95 to 697       603/1103
(54 %)
64 diff
(94.2 %id)
BM687546 eye, eye anterior segment .b 1128 to 1564 4 to 440   fully sequenced,   437/440
(99 %)
6 diff
(98.7 %id)
BX408354 adult brain, brain .b 1139 to 1889 1 to 749       749/749
(100 %)
2 diff
(99.8 %id)
TI_149295632   .b 1150 to 1889 827 to 99   AAA   729/885
(82 %)
16 diff
(98.2 %id)
EL949314 eyeball .b 1156 to 1815 1 to 659       659/659
(100 %)
9 diff
(98.7 %id)
BQ448008 Knee, Osteoarthritic Cartilage .b 1156 to 1888 748 to 19   AAA   730/730
(100 %)
9 diff
(98.8 %id)
AI940441 colon .b 1159 to 1611 460 to 4       457/460
(99 %)
9 diff
(98.1 %id)
TI_154177096   .b 1161 to 1696 79 to 614       536/538
(99 %)
29 diff
(94.7 %id)
BM691251 eye, RPE and Choroid .b 1166 to 1468 8 to 310   fully sequenced,   303/310
(97 %)
6 diff
(98.1 %id)
CN352672 embryonic stem cells, DMSO-treated H9 cellline .b 1168 to 1828 2 to 662       661/662
(99 %)
6 diff
(99.1 %id)
TI_1948076879   .b 1169 to 1691 649 to 127   fully sequenced,   523/649
(80 %)
0 diff
(100 %id)
TI_1948077046   .b 1169 to 1691 647 to 125   fully sequenced,   523/647
(80 %)
0 diff
(100 %id)
TI_1948077218   .b 1169 to 1691 648 to 126   fully sequenced,   523/648
(80 %)
0 diff
(100 %id)
CD612884   .b 1170 to 1567 400 to 3       398/415
(95 %)
0 diff
(100 %id)
CD612885   .b 1170 to 1567 400 to 3       398/415
(95 %)
0 diff
(100 %id)
BQ316242 colon .b 1174 to 1720 545 to 1       545/545
(100 %)
14 diff
(97.5 %id)
BM684665 eye, fetal eye .b 1178 to 1897 738 to 19   tiling clone, AAA   720/720
(100 %)
4 diff
(99.5 %id)
EL952287 eyeball .b 1199 to 1695 44 to 539       497/539
(92 %)
9 diff
(98.4 %id)
BX425798 neuroblastoma .b 1200 to 1883 1 to 683       683/683
(100 %)
21 diff
(97.0 %id)
BX450568 neuroblastoma .b 1200 to 1889 1 to 691       691/691
(100 %)
2 diff
(99.8 %id)
BX452796 neuroblastoma .b 1200 to 1889 1 to 691       691/691
(100 %)
3 diff
(99.6 %id)
BX452797 neuroblastoma .b 1200 to 1887 1 to 689       689/689
(100 %)
25 diff
(96.4 %id)
CR608393 neuroblastoma .b 1200 to 1889 1 to 691       691/691
(100 %)
1 diff
(99.9 %id)
EL948067 eyeball .b 1201 to 1556 17 to 371       353/371
(95 %)
6 diff
(98.4 %id)
BF958289 nervous_normal .b 1203 to 1490 323 to 35       289/323
(89 %)
8 diff
(97.6 %id)
BX325832 Neuroblastoma Cot 25-normalized .b 1203 to 1887 25 to 708       684/708
(96 %)
8 diff
(98.9 %id)
EL948992 eyeball .b 1204 to 1626 9 to 430       422/430
(98 %)
6 diff
(98.7 %id)
EL950325 eyeball .b 1206 to 1652 21 to 467       447/467
(95 %)
7 diff
(98.6 %id)
TI_57151992   .b 1206 to 1889 74 to 759   AAA   686/759
(90 %)
14 diff
(98.2 %id)
TI_154179697   .b 1207 to 1889 68 to 753       686/813
(84 %)
22 diff
(97.3 %id)
AW751546 colon .b 1211 to 1717 502 to 3       500/502
(99 %)
17 diff
(96.7 %id)
TI_154169323   .b 1218 to 1713 80 to 575       496/497
(99 %)
2 diff
(99.6 %id)
EC448678 Prostate .b 1221 to 1323 104 to 4       101/104
(97 %)
0 diff
(100 %id)
BF759950 colon .b 1225 to 1365 26 to 167       140/167
(83 %)
8 diff
(95.3 %id)
BI334953 cervical carcinoma cell line, cervix .b 1229 to 1887 1 to 658       658/683
(96 %)
5 diff
(99.3 %id)
BI333755 cervical carcinoma cell line, cervix .b 1229 to 1887 1 to 659       659/685
(96 %)
1 diff
(99.9 %id)
TI_151715594   .b 1229 to 1889 787 to 125   AAA   663/850
(78 %)
13 diff
(98.5 %id)
BQ637969 eye, retina .b 1230 to 1864 1 to 635       635/635
(100 %)
0 diff
(100 %id)
BQ326899 colon_normal .b 1233 to 1460 227 to 2       226/230
(98 %)
2 diff
(99.2 %id)
AA194148.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1236 to 1889 650 to 5     Submitted on the opposite strand, also hits gene RAPH1 646/650
(99 %)
11 diff
(98.4 %id)
BM671974 eye, fetal eye .b 1236 to 1889 672 to 19   AAA   654/654
(100 %)
0 diff
(100 %id)
BX450341 brain, fetal brain .b 1240 to 1889 1 to 647       647/647
(100 %)
14 diff
(97.9 %id)
EC535395 Prostate .b 1244 to 1348 1 to 104       104/104
(100 %)
1 diff
(99.1 %id)
EC575417 Prostate .b 1244 to 1338 15 to 110       94/110
(85 %)
6 diff
(94.6 %id)
EL953484 eyeball .b 1254 to 1696 47 to 474       428/481
(88 %)
28 diff
(94.2 %id)
EC582264 Prostate .b 1256 to 1352 1 to 96       96/96
(100 %)
1 diff
(99.0 %id)
EC467467 Prostate .b 1258 to 1359 1 to 104       102/104
(98 %)
5 diff
(95.2 %id)
EC510211 Prostate .b 1258 to 1359 1 to 103       101/103
(98 %)
4 diff
(96.2 %id)
EC538501 Prostate .b 1259 to 1359 1 to 101       101/101
(100 %)
3 diff
(97.1 %id)
CV364313 prostate_tumor .b 1267 to 1413 151 to 5     Submitted on the opposite strand 147/151
(97 %)
7 diff
(95.4 %id)
AA194087 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1270 to 1889 644 to 21     Submitted on the opposite strand 624/651
(95 %)
13 diff
(98.1 %id)
CR594482 Neuroblastoma Cot 10-normalized .b 1272 to 1888 1 to 617       617/617
(100 %)
0 diff
(100 %id)
BQ639971 eye, retina .b 1276 to 1893 1 to 618       618/625
(98 %)
1 diff
(99.9 %id)
EC471640 Prostate .b 1280 to 1382 1 to 109       109/109
(100 %)
10 diff
(90.9 %id)
EL947490 eyeball .b 1281 to 1883 8 to 609       602/609
(98 %)
7 diff
(98.9 %id)
EC467572 Prostate .b 1286 to 1378 12 to 102       91/106
(85 %)
10 diff
(90.6 %id)
CV322979 kidney_tumor .b 1302 to 1716 428 to 16     Submitted on the opposite strand 413/428
(96 %)
0 diff
(100 %id)
BM510402 insulinoma, Pancreas .b 1310 to 1544 17 to 251   fully sequenced,   235/251
(93 %)
0 diff
(100 %id)
BM690128 eye, human retina .b 1311 to 1484 9 to 182   fully sequenced,   174/182
(95 %)
0 diff
(100 %id)
TI_154009456   .b 1317 to 1888 654 to 88   AAA   567/896
(63 %)
15 diff
(98.4 %id)
BX455380 brain, fetal brain .b 1321 to 1839 568 to 49       520/703
(73 %)
14 diff
(98.1 %id)
BG818301 anaplastic oligodendroglioma with 1p/19qloss, brain .b 1321 to 1889 13 to 606       597/632
(94 %)
44 diff
(93.1 %id)
TI_154012811   .b 1322 to 1889 699 to 127   AAA   573/1067
(53 %)
9 diff
(99.2 %id)
CR619605 Neuroblastoma Cot 25-normalized .b 1331 to 1889 1 to 559       559/559
(100 %)
0 diff
(100 %id)
AW384914 head_neck .b 1332 to 1815 512 to 28       485/528
(91 %)
1 diff
(99.9 %id)
AW384946 head_neck .b 1332 to 1815 487 to 8       480/503
(95 %)
1 diff
(99.9 %id)
BX450730 brain, fetal brain .b 1341 to 1889 1 to 547       547/547
(100 %)
3 diff
(99.5 %id)
BM688219 eye, human retina .b 1347 to 1877 9 to 540   fully sequenced,   532/540
(98 %)
7 diff
(98.8 %id)
AW376633 colon .b 1351 to 1674 324 to 1       324/324
(100 %)
2 diff
(99.4 %id)
TI_151735984   .b 1353 to 1889 658 to 120   AAA   539/539
(100 %)
40 diff
(92.6 %id)
TI_149295255   .b 1359 to 1888 619 to 90   AAA   530/971
(54 %)
1 diff
(99.9 %id)
EL947046 eyeball .b 1362 to 1648 28 to 313       286/313
(91 %)
8 diff
(97.5 %id)
CR598157 Neuroblastoma Cot 25-normalized .b 1363 to 1889 1 to 527       527/527
(100 %)
0 diff
(100 %id)
EL946876 eyeball .b 1363 to 1764 1 to 400       400/400
(100 %)
5 diff
(98.8 %id)
DB570187 hypothalamus .b 1374 to 1889 1 to 516     Submitted on the opposite strand 516/516
(100 %)
4 diff
(99.3 %id)
DB570201 hypothalamus .b 1374 to 1889 1 to 516     Submitted on the opposite strand 516/516
(100 %)
0 diff
(100 %id)
DB551005 hippocampus .b 1376 to 1889 1 to 514     Submitted on the opposite strand 514/514
(100 %)
3 diff
(99.5 %id)
EL951902 eyeball .b 1384 to 1879 50 to 543       494/543
(90 %)
7 diff
(98.8 %id)
CR622478 Neuroblastoma Cot 25-normalized .b 1387 to 1891 1 to 505       505/505
(100 %)
0 diff
(100 %id)
AI313484 lung .b 1388 to 1459 72 to 1       72/72
(100 %)
3 diff
(95.9 %id)
TI_149302223   .b 1394 to 1889 557 to 62   AAA   496/952
(52 %)
0 diff
(100 %id)
EC497471 Prostate .b 1395 to 1489 1 to 95       95/95
(100 %)
5 diff
(94.8 %id)
EL949102 eyeball .b 1396 to 1696 1 to 301       301/301
(100 %)
6 diff
(98.1 %id)
DB575733 hypothalamus .b 1400 to 1889 1 to 491     Submitted on the opposite strand 491/491
(100 %)
3 diff
(99.4 %id)
EC572872 Prostate .b 1401 to 1485 1 to 87       87/105
(82 %)
8 diff
(92.4 %id)
DB568561 hypothalamus .b 1401 to 1888 1 to 488     Submitted on the opposite strand 488/488
(100 %)
0 diff
(100 %id)
DB577080 hypothalamus .b 1402 to 1889 1 to 488     Submitted on the opposite strand 488/488
(100 %)
0 diff
(100 %id)
DB550014 hippocampus .b 1404 to 1889 1 to 486     Submitted on the opposite strand 486/486
(100 %)
0 diff
(100 %id)
DB572382 hypothalamus .b 1404 to 1889 1 to 486     Submitted on the opposite strand 486/486
(100 %)
3 diff
(99.4 %id)
EL953487 eyeball .b 1408 to 1889 1 to 481   AAA   481/481
(100 %)
6 diff
(98.8 %id)
DB521932 testis .b 1410 to 1889 1 to 480     Submitted on the opposite strand 480/480
(100 %)
0 diff
(100 %id)
DB552592 hippocampus .b 1411 to 1889 1 to 479     Submitted on the opposite strand 479/479
(100 %)
1 diff
(99.8 %id)
TI_154092849   .b 1412 to 1897 582 to 96   AAA   487/732
(66 %)
31 diff
(95.8 %id)
DB572619 hypothalamus .b 1413 to 1889 1 to 477     Submitted on the opposite strand 477/477
(100 %)
0 diff
(100 %id)
DB567737 hypothalamus .b 1414 to 1888 1 to 475     Submitted on the opposite strand 475/475
(100 %)
2 diff
(99.6 %id)
DB567551 hypothalamus .b 1416 to 1889 1 to 474     Submitted on the opposite strand 474/474
(100 %)
0 diff
(100 %id)
DB573400 hypothalamus .b 1416 to 1889 1 to 474     Submitted on the opposite strand 474/474
(100 %)
0 diff
(100 %id)
DB525064 testis .b 1417 to 1889 1 to 473     Submitted on the opposite strand 473/473
(100 %)
1 diff
(99.8 %id)
DB571088 hypothalamus .b 1418 to 1889 1 to 472     Submitted on the opposite strand 472/472
(100 %)
1 diff
(99.8 %id)
DB571840 hypothalamus .b 1418 to 1889 1 to 472     Submitted on the opposite strand 472/472
(100 %)
2 diff
(99.6 %id)
DB567502 hypothalamus .b 1420 to 1889 1 to 470     Submitted on the opposite strand 470/470
(100 %)
0 diff
(100 %id)
DB520669 testis .b 1421 to 1889 1 to 469     Submitted on the opposite strand 469/469
(100 %)
1 diff
(99.8 %id)
DB574720 hypothalamus .b 1424 to 1888 1 to 464     Submitted on the opposite strand 464/464
(100 %)
3 diff
(99.4 %id)
DB574272 hypothalamus .b 1427 to 1888 1 to 462     Submitted on the opposite strand 462/462
(100 %)
0 diff
(100 %id)
DB566836 hypothalamus .b 1428 to 1889 1 to 462     Submitted on the opposite strand 462/462
(100 %)
1 diff
(99.8 %id)
DB574212 hypothalamus .b 1428 to 1889 1 to 462     Submitted on the opposite strand 462/462
(100 %)
2 diff
(99.6 %id)
DB573758 hypothalamus .b 1429 to 1889 1 to 461     Submitted on the opposite strand 461/461
(100 %)
0 diff
(100 %id)
DB521472 testis .b 1433 to 1889 1 to 457     Submitted on the opposite strand 457/457
(100 %)
0 diff
(100 %id)
DB569495 hypothalamus .b 1433 to 1888 1 to 457     Submitted on the opposite strand 457/457
(100 %)
15 diff
(96.8 %id)
TI_57201466   .b 1434 to 1889 58 to 514   AAA   457/514
(88 %)
8 diff
(98.5 %id)
EC551541 Prostate .b 1437 to 1529 1 to 93       93/93
(100 %)
6 diff
(93.6 %id)
EC557474 Prostate .b 1437 to 1513 17 to 94       78/94
(82 %)
6 diff
(93.7 %id)
DB565205 hypothalamus .b 1438 to 1886 1 to 449     Submitted on the opposite strand 449/451
(99 %)
3 diff
(99.4 %id)
DB565544 hypothalamus .b 1438 to 1889 1 to 452     Submitted on the opposite strand 452/452
(100 %)
0 diff
(100 %id)
BU726438 eye, RPE and Choroid .b 1438 to 1891 472 to 19   fully sequenced, AAA   454/454
(100 %)
0 diff
(100 %id)
EC511612 Prostate .b 1445 to 1529 13 to 96       84/96
(87 %)
8 diff
(91.7 %id)
DB564573 hypothalamus .b 1448 to 1889 1 to 442     Submitted on the opposite strand 442/442
(100 %)
0 diff
(100 %id)
BF758047 colon .b 1449 to 1631 195 to 9     Submitted on the opposite strand 185/212
(87 %)
5 diff
(97.7 %id)
EL952163 eyeball .b 1449 to 1889 10 to 449   AAA   440/449
(97 %)
7 diff
(98.5 %id)
DB546462 hippocampus .b 1449 to 1889 1 to 441     Submitted on the opposite strand 441/441
(100 %)
0 diff
(100 %id)
DB555827 hypothalamus .b 1450 to 1886 1 to 434     Submitted on the opposite strand 434/434
(100 %)
53 diff
(87.8 %id)
BM662176 eye, human retina .b 1454 to 1889 454 to 19   fully sequenced, AAA   436/436
(100 %)
0 diff
(100 %id)
EL952592 eyeball .b 1463 to 1802 21 to 359       339/359
(94 %)
11 diff
(97.0 %id)
CR612287 neuroblastoma .b 1464 to 1889 1 to 426       426/426
(100 %)
0 diff
(100 %id)
EC565987 Prostate .b 1482 to 1573 11 to 99       89/103
(86 %)
10 diff
(90.3 %id)
BM686669 eye, optic nerve .b 1482 to 1889 1 to 408   fully sequenced, AAA   408/408
(100 %)
0 diff
(100 %id)
BM508216 insulinoma, Pancreas .b 1483 to 1849 367 to 1   fully sequenced,   367/367
(100 %)
0 diff
(100 %id)
BU726365 eye, RPE and Choroid .b 1483 to 1889 424 to 18   fully sequenced, AAA   407/407
(100 %)
0 diff
(100 %id)
W27359 eye, retina .b 1486 to 1888 426 to 26       401/420
(95 %)
1 diff
(99.8 %id)
EC472660 Prostate .b 1489 to 1585 11 to 104       94/104
(90 %)
11 diff
(89.5 %id)
EC494366 Prostate .b 1490 to 1554 1 to 65       65/66
(98 %)
1 diff
(98.5 %id)
EC461398 Prostate .b 1491 to 1592 102 to 1       102/102
(100 %)
0 diff
(100 %id)
EC577467 Prostate .b 1491 to 1592 102 to 1       102/102
(100 %)
0 diff
(100 %id)
EL947003 eyeball .b 1495 to 1877 31 to 413       383/413
(92 %)
12 diff
(97.1 %id)
BM677250 eye, fetal eye .b 1496 to 1887 410 to 19   AAA   392/392
(100 %)
0 diff
(100 %id)
BX436252 adult brain, brain .b 1511 to 1838 375 to 49       327/375
(87 %)
0 diff
(100 %id)
CA391335 eye, RPE/choroid .b 1512 to 1891 412 to 33   AAA Submitted on the opposite strand 380/380
(100 %)
2 diff
(99.5 %id)
AA015936 eye, retina .b 1512 to 1887 377 to 2     Submitted on the opposite strand 376/444
(84 %)
0 diff
(100 %id)
CR618596 Neuroblastoma Cot 25-normalized .b 1514 to 1889 1 to 376       376/376
(100 %)
0 diff
(100 %id)
BX328507 Neuroblastoma Cot 25-normalized .b 1514 to 1889 375 to 1       375/375
(100 %)
23 diff
(93.9 %id)
BX328508 Neuroblastoma Cot 25-normalized .b 1514 to 1889 1 to 376       376/376
(100 %)
1 diff
(99.8 %id)
BX354625 Neuroblastoma Cot 25-normalized .b 1514 to 1889 1 to 376       376/376
(100 %)
1 diff
(99.8 %id)
TI_154182612   .b 1516 to 1894 71 to 450       380/836
(45 %)
4 diff
(99.6 %id)
TI_154182619   .b 1516 to 1889 62 to 435       374/785
(47 %)
1 diff
(99.9 %id)
BU727820 eye, eye anterior segment .b 1536 to 1889 372 to 19   fully sequenced, AAA   354/354
(100 %)
0 diff
(100 %id)
DB555771 hypothalamus .b 1539 to 1888 17 to 374     Submitted on the opposite strand 358/374
(95 %)
6 diff
(98.4 %id)
BM672831 eye, optic nerve .b 1541 to 1889 367 to 19   AAA   349/350
(99 %)
0 diff
(100 %id)
FN079106 breast carcinoma .b 1546 to 1637 1 to 92       92/94
(97 %)
1 diff
(99.0 %id)
BU726953 eye, human retina .b 1555 to 1889 353 to 19   fully sequenced, AAA   335/335
(100 %)
0 diff
(100 %id)
EC516800 Prostate .b 1562 to 1643 16 to 98       83/98
(84 %)
6 diff
(93.9 %id)
EC531315 Prostate .b 1563 to 1643 14 to 94       81/94
(86 %)
6 diff
(93.7 %id)
BX408042 neuroblastoma .b 1576 to 1889 1 to 313       313/313
(100 %)
5 diff
(98.5 %id)
AA555135 normal prostatic epithelial cells, Prostate .b 1580 to 1880 306 to 6       301/306
(98 %)
0 diff
(100 %id)
EC541621 Prostate .b 1585 to 1664 81 to 1       81/82
(98 %)
1 diff
(98.8 %id)
AA507320 Prostate .b 1589 to 1846 257 to 1       257/264
(97 %)
2 diff
(99.3 %id)
AA580039 Prostate .b 1589 to 1888 306 to 9       298/313
(95 %)
0 diff
(100 %id)
T06159   .b 1590 to 1889 300 to 1       300/300
(100 %)
1 diff
(99.7 %id)
BM705355 eye, RPE and Choroid .b 1597 to 1882 286 to 1     Submitted on the opposite strand 286/330
(86 %)
1 diff
(99.7 %id)
W21084 lung .b 1601 to 1889 293 to 1     Submitted on the opposite strand 293/358
(81 %)
11 diff
(97.0 %id)
AW843270 colon_normal .b 1609 to 1808 201 to 1       201/201
(100 %)
3 diff
(98.6 %id)
AW843289 colon_normal .b 1609 to 1808 200 to 1       200/200
(100 %)
2 diff
(99.0 %id)
BU728027 eye, optic nerve .b 1623 to 1889 285 to 19   fully sequenced, AAA   267/267
(100 %)
0 diff
(100 %id)
AA533870 normal prostatic epithelial cells, Prostate .b 1637 to 1889 265 to 14   AAA   252/261
(96 %)
4 diff
(98.5 %id)
DW424283 Liver .b 1659 to 1888 10 to 239   AAA   230/239
(96 %)
6 diff
(97.5 %id)
DW424284 Liver .b 1659 to 1888 10 to 239   AAA   230/239
(96 %)
6 diff
(97.5 %id)
AA019235 eye, retina .b 1677 to 1878 209 to 10     Submitted on the opposite strand 200/209
(95 %)
0 diff
(100 %id)
BF364524 nervous_normal .b 1687 to 1820 135 to 1       135/135
(100 %)
4 diff
(97.1 %id)
DB546436 hippocampus .b 1688 to 1887 1 to 200     Submitted on the opposite strand 200/200
(100 %)
0 diff
(100 %id)
BF745483 breast .b 1692 to 1793 1 to 102       102/102
(100 %)
6 diff
(94.2 %id)
EC448474 Prostate .b 1700 to 1799 1 to 103       103/103
(100 %)
3 diff
(97.1 %id)
BG202466   .b 1704 to 1889 220 to 35   AAA Submitted on the opposite strand 186/186
(100 %)
2 diff
(99.0 %id)
EC505972 Prostate .b 1712 to 1799 6 to 92       87/92
(94 %)
6 diff
(93.5 %id)
GD139375   .b 1756 to 1887 1 to 132       132/144
(91 %)
6 diff
(95.9 %id)
DR978397 brain .b 1756 to 1888 1 to 132   AAA Submitted on the opposite strand 132/132
(100 %)
3 diff
(97.8 %id)
EC495776 Prostate .b 1781 to 1890 114 to 5       110/114
(96 %)
0 diff
(100 %id)
EC530508 Prostate .b 1782 to 1883 120 to 18       103/120
(85 %)
0 diff
(100 %id)
EC454177 Prostate .b 1793 to 1887 104 to 11       94/113
(83 %)
0 diff
(100 %id)
EC454782 Prostate .b 1793 to 1887 97 to 3       95/104
(91 %)
0 diff
(100 %id)
EC456823 Prostate .b 1793 to 1887 99 to 4       96/106
(90 %)
0 diff
(100 %id)
EC457781 Prostate .b 1793 to 1887 99 to 4       96/106
(90 %)
0 diff
(100 %id)
EC458369 Prostate .b 1793 to 1887 99 to 3       97/107
(90 %)
0 diff
(100 %id)
EC460106 Prostate .b 1793 to 1887 93 to 1       93/107
(86 %)
2 diff
(98.2 %id)
EC470380 Prostate .b 1793 to 1887 95 to 5       91/102
(89 %)
0 diff
(100 %id)
EC485773 Prostate .b 1793 to 1883 107 to 16       92/107
(85 %)
0 diff
(100 %id)
EC490290 Prostate .b 1793 to 1889 101 to 6       96/111
(86 %)
0 diff
(100 %id)
EC490360 Prostate .b 1793 to 1889 104 to 10       95/114
(83 %)
0 diff
(100 %id)
EC498125 Prostate .b 1793 to 1886 99 to 6       94/106
(88 %)
0 diff
(100 %id)
EC512820 Prostate .b 1793 to 1885 92 to 1       92/101
(91 %)
1 diff
(99.1 %id)
EC513060 Prostate .b 1793 to 1887 101 to 5       97/108
(89 %)
0 diff
(100 %id)
EC533637 Prostate .b 1793 to 1889 101 to 6       96/111
(86 %)
0 diff
(100 %id)
EC543570 Prostate .b 1793 to 1885 90 to 1       90/103
(87 %)
3 diff
(97.1 %id)
EC553077 Prostate .b 1793 to 1889 107 to 12   AAA   96/106
(90 %)
1 diff
(99.1 %id)
EC557949 Prostate .b 1793 to 1887 96 to 4       93/105
(88 %)
0 diff
(100 %id)
EC558593 Prostate .b 1793 to 1887 95 to 1       95/102
(93 %)
0 diff
(100 %id)
EC570833 Prostate .b 1808 to 1887 81 to 4       78/82
(95 %)
0 diff
(100 %id)
AI460256 colon .b 1829 to 1889 61 to 1       61/61
(100 %)
0 diff
(100 %id)
CR617409 Neuroblastoma Cot 25-normalized .c 1 to 1239 1 to 1239 exact tiling clone,   1239/1239
(100 %)
0 diff
(100 %id)
DB044942 testis .d 1 to 572 2 to 573   tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
CF145293 CNCAP(3)T-225 cell line, Prostate .d 100 to 815 8 to 724   tiling clone,   717/724
(99 %)
7 diff
(99.1 %id)
CF146471 CNCAP(3)T-225 cell line, Prostate .d 100 to 667 8 to 576       569/576
(98 %)
6 diff
(99.0 %id)
TI_154177484   .d 100 to 863 72 to 834       763/763
(100 %)
9 diff
(98.9 %id)
TI_154178924   .d 100 to 850 70 to 806       737/885
(83 %)
33 diff
(96.3 %id)
AI300086 2 pooled tumors (clear cell type), Kidney .d 728 to 1424 1 to 697   tiling clone, Submitted on the opposite strand 697/697
(100 %)
2 diff
(99.8 %id)
DB455261 testis .d 807 to 1288 1 to 482       482/482
(100 %)
1 diff
(99.8 %id)
DB494169 hypothalamus .d 813 to 1302 1 to 490       490/490
(100 %)
4 diff
(99.2 %id)
CR592666 T cells (Jurkat cell line) Cot10-normalized .d 814 to 1897 1 to 1084   tiling clone,   1084/1084
(100 %)
0 diff
(100 %id)
BX368121   .d 814 to 1236 423 to 1       423/423
(100 %)
5 diff
(98.9 %id)
BU072826 Pancreas, Purified pancreatic islet .d 823 to 1403 1 to 583   fully sequenced,   583/583
(100 %)
3 diff
(99.5 %id)
BM552282 astrocytoma grade IV, cell line, brain .d 828 to 1655 1 to 834       834/1049
(79 %)
17 diff
(98.4 %id)
BQ924706 large cell carcinoma, lung .d 829 to 1664 1 to 849       849/934
(90 %)
25 diff
(97.4 %id)
BX340658   .d 952 to 1897 938 to 1 S27F M29H A30G R31P D32X ...     938/1005
(93 %)
24 diff
(97.7 %id)
BG570286 lung .d 992 to 1671 1 to 679       679/679
(100 %)
3 diff
(99.6 %id)
BG506875 lung .d 1018 to 1722 1 to 707       707/707
(100 %)
27 diff
(96.2 %id)
AW328427 cervix .d 1023 to 1524 1 to 504       504/504
(100 %)
2 diff
(99.7 %id)
BP423830 small intestine .d 1029 to 1530 1 to 502     Submitted on the opposite strand 502/502
(100 %)
0 diff
(100 %id)
BQ923280 epidermoid carcinoma, cell line, lung .d 1030 to 1894 1 to 877       877/880
(99 %)
14 diff
(98.5 %id)
BG981539 colon_normal .d 1036 to 1324 302 to 14       289/302
(95 %)
0 diff
(100 %id)
TI_59387401   .d 1057 to 1649 127 to 719       593/598
(99 %)
5 diff
(99.2 %id)
BM562968 astrocytoma grade IV, cell line, brain .d 1058 to 1928 1 to 873   tiling clone, AAA   873/873
(100 %)
7 diff
(99.2 %id)
BQ776627 Pancreas, Purified pancreatic islet .d 1373 to 1924 557 to 6   tiling clone, fully sequenced,   552/557
(99 %)
5 diff
(99.2 %id)
TI_44169442   .e 1 to 674 151 to 811       601/818
(73 %)
37 diff
(95.5 %id)
DA077464 cerebellum .e 1 to 522 2 to 523   tiling clone, capped   522/522
(100 %)
1 diff
(99.9 %id)
DA004496   .e 4 to 559 2 to 563   tiling clone, capped   562/562
(100 %)
9 diff
(98.4 %id)
TI_45213893   .e 5 to 629 130 to 795       626/795
(78 %)
25 diff
(96.9 %id)
BI915294 brain .e 273 to 1081 1 to 812   tiling clone,   812/870
(93 %)
9 diff
(99.0 %id)
TI_57244255   .e 273 to 1143 34 to 903   tiling clone,   870/903
(96 %)
21 diff
(97.7 %id)
AW374726 colon .e 696 to 933 239 to 1       239/239
(100 %)
5 diff
(98.0 %id)
TI_154113016   .f -10 to 595 239 to 838   tiling clone, Submitted on the opposite strand 600/1019
(58 %)
16 diff
(98.5 %id)
CA448625 Chondrosarcoma, Left Pelvis .f -10 to 406 171 to 587   tiling clone, Submitted on the opposite strand 417/587
(71 %)
6 diff
(99.0 %id)
AA974137 pooled germ cell tumors .f 578 to 807 271 to 42   tiling clone, AAA   230/230
(100 %)
3 diff
(98.7 %id)
EL954827 eyeball .g 1 to 468 51 to 518   tiling clone,   468/518
(90 %)
9 diff
(98.3 %id)
TI_57163172   .g 27 to 503 111 to 597 P2I F3L S4H N5Q S6P ... tiling clone,   485/600
(80 %)
16 diff
(97.4 %id)
BX408963 adult brain, brain .g 34 to 488 456 to 1   tiling clone,   456/456
(100 %)
4 diff
(99.2 %id)
BQ637571 eye, retina .h 1 to 579 1 to 579   tiling clone,   579/579
(100 %)
0 diff
(100 %id)
TI_57243774   .h 495 to 1218 31 to 758       728/759
(95 %)
15 diff
(98.1 %id)
BI917603 brain .h 496 to 1218 1 to 727   tiling clone,   727/728
(99 %)
15 diff
(98.0 %id)
BX952655   .h 654 to 1181 1 to 528   tiling clone,   528/528
(100 %)
1 diff
(99.9 %id)
BF953697 nervous_normal .h 880 to 1294 1 to 416       416/416
(100 %)
6 diff
(98.6 %id)
H20626 whole brain .h 942 to 1340 1 to 402       402/473
(84 %)
13 diff
(97.3 %id)
TI_149313240   .h 1041 to 1909 968 to 110 Q2A K3T G4* tiling clone, AAA   859/949
(90 %)
31 diff
(96.8 %id)
R99666 liver and spleen .h 1088 to 1508 9 to 436   tiling clone, fully sequenced,   426/434
(98 %)
21 diff
(95.2 %id)
BI048649 testis_normal .h 1112 to 1303 199 to 10       190/205
(92 %)
0 diff
(100 %id)
R99124 liver and spleen .h 1489 to 1908 431 to 7   fully sequenced,   425/431
(98 %)
5 diff
(98.9 %id)
H20533 whole brain .h 1543 to 1912 383 to 15   tiling clone, AAA   369/369
(100 %)
5 diff
(98.7 %id)
DA064203 cerebellum .i 1 to 482 2 to 483   capped   482/482
(100 %)
1 diff
(99.8 %id)
DB497454 hypothalamus .i 3 to 511 1 to 509       509/509
(100 %)
5 diff
(99.1 %id)
DB498407 hypothalamus .i 3 to 522 1 to 520       520/521
(99 %)
4 diff
(99.3 %id)
DA057042 cerebellum .i 4 to 573 2 to 571   tiling clone, capped   570/570
(100 %)
0 diff
(100 %id)
DA257302 caudate nucleus .i 4 to 569 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
BI458267 brain, hypothalamus .i 5 to 802 8 to 802   tiling clone,   797/804
(99 %)
31 diff
(96.2 %id)
CN352675 embryonic stem cells, DMSO-treated H9 cellline .i 6 to 616 1 to 611       611/611
(100 %)
2 diff
(99.7 %id)
CN352658 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .i 14 to 466 1 to 453       453/453
(100 %)
6 diff
(98.7 %id)
AI815481 brain, frontal lobe .i 19 to 494 1 to 476       476/476
(100 %)
1 diff
(99.8 %id)
BF568570 epithelioid carcinoma cell line, Pancreas .i 42 to 622 1 to 584       586/584
(100 %)
8 diff
(98.7 %id)
AI302810 2 pooled tumors (clear cell type), Kidney .i 320 to 651 332 to 1       332/332
(100 %)
1 diff
(99.7 %id)
AI918203 anaplastic oligodendroglioma, brain .i 497 to 669 173 to 1   tiling clone,   173/173
(100 %)
1 diff
(99.5 %id)
BQ956236 large cell carcinoma, lung .i 738 to 1386 1 to 651   tiling clone,   651/969
(67 %)
21 diff
(97.9 %id)
BE907893 epithelioid carcinoma, Pancreas .i 1007 to 1704 1 to 685   tiling clone,   685/714
(95 %)
19 diff
(97.4 %id)
BQ720711 sympathetic trunk .j 1 to 520 5 to 527 S67T R69P E86Q A89P S95R ... tiling clone,   527/1057
(49 %)
32 diff
(97.0 %id)
AW299718 Kidney .k-u 1 to 486 486 to 1 A124P tiling clone,   486/486
(100 %)
4 diff
(99.2 %id)
CB117129 Liver .l 1 to 270 1 to 270 exact tiling clone,   270/270
(100 %)
0 diff
(100 %id)
AA809557 normal prostatic epithelial cells, Prostate .m-u 1 to 449 1 to 452 M2T L11R tiling clone,   452/452
(100 %)
15 diff
(96.7 %id)
AA327163 colon .m-u 89 to 365 1 to 278       278/278
(100 %)
2 diff
(99.3 %id)
DC360791   Gene CKB, variant not shown         Suspected internal deletion, this clone was ignored    
AK298198   Gene CKB, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AA010786 heart Gene CKB, variant not shown       fully sequenced, This clone was ignored    
AA011195 heart Gene CKB, variant not shown       fully sequenced, AAA This clone was ignored    
BG708815 brain, hypothalamus Gene CKB, variant not shown         This clone was ignored    
BG699363 brain, hippocampus Gene CKB, variant not shown         This clone was ignored    
TI_57202733   Gene CKB, variant not shown         This clone was ignored    
TI_45216146   Gene CKB, variant not shown         This clone was ignored    
TI_44342574   Gene CKB, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u, .l, .m-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI