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Gene NLRP3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
102 supporting clones for gene NLRP3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BI040457 nervous_tumor .a 1 to 456 1 to 460   tiling clone,   460/460
(100 %)
29 diff
(93.7 %id)
BF928591 nervous_tumor .a 42 to 451 426 to 18   tiling clone, Submitted on the opposite strand 409/426
(96 %)
0 diff
(100 %id)
BF932006 nervous_tumor .a 157 to 462 37 to 343   tiling clone,   307/343
(89 %)
6 diff
(98.3 %id)
AF410477   .a 258 to 4427 1 to 4170 exact tiling clone,   4170/4170
(100 %)
7 diff
(99.9 %id)
NM_004895.4   .a 258 to 4712 1 to 4455 exact RefSeq, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 4455/4455
(100 %)
1 diff
(100.0 %id)
AF468522   .a 842 to 4420 1 to 3579 R167L Q323H K617N tiling clone,   3579/3579
(100 %)
6 diff
(99.9 %id)
BC143362 Colon, PCR rescued clones .a 939 to 4205 1 to 3267 exact     3267/3267
(100 %)
2 diff
(100.0 %id)
AK314998 brain .b 1 to 3248 2 to 3249 M523V tiling clone,   3249/3249
(100 %)
3 diff
(100.0 %id)
NM_001079821.2   .b 1 to 3846 2 to 3847 exact RefSeq, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 3847/3847
(100 %)
1 diff
(100.0 %id)
DA244290 brain .b 1 to 598 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
AF420469   .b 29 to 3846 24 to 3842 exact tiling clone, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 3819/3842
(99 %)
7 diff
(99.9 %id)
DR005510 Prostate .b 37 to 627 8 to 598       591/598
(98 %)
6 diff
(99.0 %id)
TI_2194575304   .b 109 to 1223 6 to 1118       1113/1245
(89 %)
21 diff
(98.4 %id)
TI_2194575312   .b 114 to 1226 1 to 1109       1109/1249
(88 %)
20 diff
(98.4 %id)
TI_1320129462   .b 126 to 1358 21 to 1233       1182/1224
(96 %)
23 diff
(98.2 %id)
TI_2194579070   .b 219 to 1019 807 to 3       805/807
(99 %)
4 diff
(99.6 %id)
DA988863 synovial membrane tissue from rheumatioidarthritis .b 292 to 710 2 to 420   capped   419/419
(100 %)
1 diff
(99.8 %id)
AA381361   .b 384 to 608 1 to 225       225/225
(100 %)
1 diff
(99.6 %id)
TI_2194575313   .b 420 to 1570 10 to 1155       1146/1245
(92 %)
25 diff
(98.0 %id)
TI_1320129463   .b 420 to 1606 11 to 1184       1174/1249
(93 %)
30 diff
(97.6 %id)
TI_2194575305   .b 427 to 1626 7 to 1197       1191/1252
(95 %)
33 diff
(97.4 %id)
TI_1320130891   .b 655 to 1662 1026 to 5       1022/1124
(90 %)
0 diff
(100 %id)
TI_2194575298   .b 734 to 1769 1 to 1035   tiling clone,   1035/1216
(85 %)
18 diff
(98.6 %id)
TI_2194575306   .b 742 to 1880 7 to 1141   tiling clone,   1135/1245
(91 %)
6 diff
(99.6 %id)
TI_1320129455   .b 745 to 1878 10 to 1136       1127/1250
(90 %)
18 diff
(98.6 %id)
DN996487 breast cancer, Mammary gland (cancer tissue) .b 801 to 1438 9 to 646       638/646
(98 %)
2 diff
(99.7 %id)
TI_2194579068   .b 878 to 1670 802 to 10       793/802
(98 %)
0 diff
(100 %id)
TI_1320131157   .b 907 to 1671 771 to 3   tiling clone,   769/1036
(74 %)
0 diff
(100 %id)
TI_2194575299   .b 1023 to 2113 1 to 1080       1080/1234
(87 %)
16 diff
(98.8 %id)
TI_1320129456   .b 1042 to 2222 11 to 1184       1174/1227
(95 %)
24 diff
(98.1 %id)
TI_2194579067   .b 1159 to 2076 936 to 14       923/937
(98 %)
0 diff
(100 %id)
TI_2194575300   .b 1362 to 2460 9 to 1104       1096/1245
(88 %)
14 diff
(98.9 %id)
TI_2194575310   .b 1843 to 3024 6 to 1179       1174/1261
(93 %)
23 diff
(98.2 %id)
BQ232967 embryonal carcinoma, cell line, testis .b 2090 to 2982 1 to 899       899/914
(98 %)
20 diff
(97.9 %id)
TI_2194579741   .b 2222 to 3341 1165 to 56     Submitted on the opposite strand 1110/1251
(88 %)
22 diff
(98.3 %id)
TI_2194575966   .b 2230 to 3341 1155 to 55     Submitted on the opposite strand 1101/1277
(86 %)
21 diff
(98.4 %id)
TI_2194575311   .b 2231 to 3327 1 to 1095       1095/1216
(90 %)
14 diff
(98.9 %id)
BX280095 pooled .b 2299 to 2777 1 to 479       479/479
(100 %)
0 diff
(100 %id)
AW176538 colon .b 2402 to 2725 325 to 1       325/325
(100 %)
7 diff
(97.9 %id)
TI_1320129460   .b 2464 to 3341 69 to 946       878/1174
(74 %)
1 diff
(100.0 %id)
BG216862   .b 2797 to 3553 761 to 6     Submitted on the opposite strand 756/857
(88 %)
39 diff
(95.5 %id)
CA308182 Alveolar Macrophage, lung .b 2856 to 3556 718 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 700/700
(100 %)
4 diff
(99.5 %id)
CD368880 Alveolar Macrophage, lung .b 2858 to 3559 720 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 702/702
(100 %)
2 diff
(99.8 %id)
TI_1320130879   .b 2891 to 3341 1 to 451       451/1236
(36 %)
6 diff
(99.6 %id)
TI_1320131143   .b 2898 to 3341 13 to 456       444/1128
(39 %)
7 diff
(99.4 %id)
BX281732 liver and spleen .b 2924 to 3415 1 to 492       492/492
(100 %)
0 diff
(100 %id)
R94860 liver and spleen .b 2925 to 3364 1 to 455   fully sequenced,   455/455
(100 %)
18 diff
(96.1 %id)
CA309001 Alveolar Macrophage, lung .b 2944 to 3556 631 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 613/613
(100 %)
2 diff
(99.7 %id)
BP390109 pancreatic islet .b 3062 to 3558 1 to 497     Submitted on the opposite strand 497/499
(99 %)
1 diff
(99.8 %id)
AI954796 pooled germ cell tumors .b 3148 to 3240 96 to 4       93/100
(93 %)
0 diff
(100 %id)
CD521489 pooled .b 3310 to 3565 1 to 256       256/294
(87 %)
3 diff
(99.0 %id)
R94861 liver and spleen .b 3334 to 3776 452 to 1   tiling clone, fully sequenced,   452/452
(100 %)
27 diff
(94.1 %id)
C01539   .b 3354 to 3561 1 to 208       208/208
(100 %)
1 diff
(99.6 %id)
AW793380 uterus .b 3490 to 3640 172 to 25       148/172
(86 %)
0 diff
(100 %id)
AW468866 pooled .b 3508 to 3846 340 to 1       340/340
(100 %)
4 diff
(98.9 %id)
BC143359 Colon, PCR rescued clones .c 1 to 3207 1 to 3207 exact tiling clone,   3207/3207
(100 %)
3 diff
(100.0 %id)
TI_2194575301   .c 1526 to 2690 1 to 1155       1155/1226
(94 %)
28 diff
(97.8 %id)
TI_2194575302   .c 1772 to 2970 1 to 1188       1191/1238
(96 %)
28 diff
(97.8 %id)
TI_2194576345   .c 2078 to 3209 1179 to 68   tiling clone,   1063/1271
(83 %)
19 diff
(98.6 %id)
TI_2194579744   .c 2230 to 3209 1044 to 73       972/1178
(82 %)
16 diff
(98.7 %id)
NM_001127462.2   .d 1 to 4284 1 to 4284 exact RefSeq, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 4284/4284
(100 %)
1 diff
(100.0 %id)
BC117211 Colon, PCR rescued clones .d 682 to 3777 1 to 3096 exact     3096/3096
(100 %)
2 diff
(100.0 %id)
BC143363 Colon, PCR rescued clones .d 682 to 3767 1 to 3086 exact tiling clone,   3086/3086
(100 %)
2 diff
(100.0 %id)
AY422168   .d 753 to 3686 1 to 2934   tiling clone,   2934/2934
(100 %)
1 diff
(100.0 %id)
TI_1320130883   .d 1861 to 2995 1140 to 5       1136/1151
(98 %)
20 diff
(98.3 %id)
TI_1320131147   .d 1873 to 2988 1129 to 13       1117/1251
(89 %)
35 diff
(97.3 %id)
TI_1320129457   .d 1971 to 3122 8 to 1142       1138/1223
(93 %)
30 diff
(97.6 %id)
TI_2194579066   .d 2118 to 3003 887 to 2       886/889
(99 %)
2 diff
(99.8 %id)
TI_1320129458   .d 2222 to 3250 16 to 1043       1028/1221
(84 %)
12 diff
(99.1 %id)
TI_2194579163   .d 2343 to 3388 1039 to 1       1039/1135
(91 %)
25 diff
(97.8 %id)
TI_1320129459   .d 2448 to 3569 1 to 1119       1119/1252
(89 %)
9 diff
(99.3 %id)
TI_2194575968   .d 2671 to 3778 1136 to 45     Submitted on the opposite strand 1092/1245
(87 %)
19 diff
(98.5 %id)
CR609473 thymus .d 2685 to 3970 1 to 1286   tiling clone,   1286/1286
(100 %)
0 diff
(100 %id)
BX414702 thymus .d 2685 to 3345 1 to 661   fully sequenced,   661/661
(100 %)
0 diff
(100 %id)
TI_2194579742   .d 2819 to 3778 1000 to 42     Submitted on the opposite strand 1021/1252
(81 %)
27 diff
(97.9 %id)
BX414701 thymus .d 3315 to 3970 657 to 1   fully sequenced,   657/657
(100 %)
4 diff
(99.4 %id)
NM_001127461.2   .e 1 to 4317 2 to 4318 exact RefSeq, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 4318/4318
(100 %)
1 diff
(100.0 %id)
AL601856   .e 13 to 621 1 to 609   tiling clone,   609/609
(100 %)
5 diff
(99.2 %id)
BE243034 leukopheresis .e 17 to 348 1 to 332       332/332
(100 %)
5 diff
(98.5 %id)
AB208891 brain .e 25 to 4032 1 to 4008 exact tiling clone,   4008/4008
(100 %)
4 diff
(100.0 %id)
BG392341 embryonal carcinoma, cell line, testis .e 46 to 530 1 to 502       502/502
(100 %)
21 diff
(95.9 %id)
BP292644 lung .e 605 to 1182 1 to 579   tiling clone,   579/583
(99 %)
3 diff
(99.5 %id)
TI_2194579165   .e 706 to 1394 698 to 11       688/840
(81 %)
4 diff
(99.6 %id)
TI_2194575962   .e 710 to 1896 42 to 1222       1181/1300
(90 %)
47 diff
(96.4 %id)
TI_2194579740   .e 710 to 1772 50 to 1096       1047/1238
(84 %)
21 diff
(98.4 %id)
TI_2194576349   .e 710 to 1885 60 to 1222     Submitted on the opposite strand 1163/1282
(90 %)
26 diff
(98.0 %id)
TI_2194579745   .e 710 to 1820 61 to 1168     Submitted on the opposite strand 1108/1240
(89 %)
23 diff
(98.2 %id)
TI_2194576351   .e 710 to 1885 56 to 1226     Submitted on the opposite strand 1171/1296
(90 %)
22 diff
(98.4 %id)
TI_2194579166   .e 710 to 1226 528 to 12       517/1033
(50 %)
2 diff
(99.9 %id)
TI_2194579283   .e 710 to 1543 129 to 964     Submitted on the opposite strand 836/964
(86 %)
12 diff
(98.8 %id)
TI_2194579333   .e 710 to 1395 127 to 811     Submitted on the opposite strand 685/811
(84 %)
10 diff
(98.8 %id)
TI_2194579746   .e 710 to 1844 64 to 1179     Submitted on the opposite strand 1116/1231
(90 %)
37 diff
(97.0 %id)
TI_1320130897   .e 710 to 1650 953 to 10       944/1163
(81 %)
8 diff
(99.4 %id)
TI_1320131983   .e 710 to 1642 215 to 1139     Submitted on the opposite strand 925/1222
(75 %)
35 diff
(97.2 %id)
TI_1320132525   .e 710 to 1818 48 to 1141       1094/1235
(88 %)
23 diff
(98.2 %id)
AF427617   .f 1 to 3828 1 to 3828 exact tiling clone,   3828/3828
(100 %)
7 diff
(99.9 %id)
NM_183395.2   .f 1 to 4113 1 to 4113 exact RefSeq, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 4113/4113
(100 %)
1 diff
(100.0 %id)
AY092033 peripheral blood leukocytes .f 585 to 3821 1 to 3237 R167L Q323H K617N tiling clone,   3237/3237
(100 %)
6 diff
(99.9 %id)
AF054176   .f 1922 to 4113 1 to 2189   tiling clone, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 2189/2189
(100 %)
14 diff
(99.4 %id)
AK027194 Human lung .g 1 to 2524 1 to 2526 R167L F209V D210* tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 2526/2526
(100 %)
10 diff
(99.7 %id)
AF418985   .g 14 to 2524 1 to 2511 R167L Q323H K617N tiling clone, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 2511/2511
(100 %)
8 diff
(99.7 %id)
AU310666 neuroblastoma .h 1 to 580 1 to 580 exact tiling clone,   580/580
(100 %)
1 diff
(99.9 %id)
AU310667 neuroblastoma .h 639 to 1186 550 to 2   tiling clone,   549/550
(99 %)
0 diff
(100 %id)
TI_2194579069   Gene NLRP3, variant not shown         This clone was ignored    
TI_1320132529   Gene NLRP3, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI