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Gene VSX2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
19 supporting clones for gene VSX2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AY336059   .a 1 to 2994 1 to 2994 exact tiling clone, AAA 2994/2994
(100 %)
0 diff
(100 %id)
NM_182894.2   .a 1 to 2995 1 to 2995 exact RefSeq, 2995/2995
(100 %)
0 diff
(100 %id)
BC128153 PCR rescued clones .a 45 to 1641 1 to 1597 exact   1597/1597
(100 %)
1 diff
(100.0 %id)
BY797209 eye .a 332 to 890 1 to 559     559/559
(100 %)
1 diff
(99.9 %id)
CA395285 eye, RPE/choroid .a 691 to 1253 1 to 563     563/563
(100 %)
1 diff
(99.9 %id)
BX490641   .a 802 to 1249 10 to 462     453/462
(98 %)
6 diff
(98.8 %id)
BM704051 eye, Retina Foveal and Macular .a 948 to 1399 1 to 452     452/452
(100 %)
3 diff
(99.4 %id)
TI_151703019   .a 1043 to 1669 730 to 99   AAA 632/1200
(52 %)
35 diff
(97.1 %id)
BQ636604 eye, retina .a 1134 to 1742 1 to 609     609/609
(100 %)
8 diff
(98.7 %id)
BM690185 eye, human retina .a 1462 to 1906 9 to 453     445/453
(98 %)
5 diff
(98.9 %id)
BM687178 eye, optic nerve .a 2079 to 2611 9 to 541     533/545
(97 %)
1 diff
(99.9 %id)
BQ639470 eye, retina .a 2176 to 2776 1 to 601     601/601
(100 %)
0 diff
(100 %id)
BM687954 eye, human retina .a 2290 to 2805 1 to 516   fully sequenced, 516/516
(100 %)
4 diff
(99.3 %id)
EL948272 eyeball .a 2397 to 2722 30 to 355     326/355
(91 %)
6 diff
(98.4 %id)
BM709651 eye, Retina Foveal and Macular .a 2491 to 2988 1 to 498   fully sequenced, 498/498
(100 %)
0 diff
(100 %id)
BU736665 eye, Retina Foveal and Macular .a 2580 to 2994 427 to 13   AAA 415/417
(99 %)
3 diff
(99.3 %id)
EL948447 eyeball .a 2605 to 2809 37 to 245     209/245
(85 %)
6 diff
(97.6 %id)
TI_151698815   .a 2646 to 2992 471 to 125     347/723
(47 %)
0 diff
(100 %id)
BM672563 eye, optic nerve .a 2660 to 2994 353 to 19   AAA 335/335
(100 %)
1 diff
(99.8 %id)
BU734140 eye, Retina Foveal and Macular .a 2724 to 2994 283 to 13   fully sequenced, AAA 271/271
(100 %)
0 diff
(100 %id)
BU726660 eye, human retina .a 2775 to 2994 232 to 13   fully sequenced, AAA 220/220
(100 %)
0 diff
(100 %id)
BF516368   .b-u 1 to 399 398 to 1 A2V G19V tiling clone, 398/399
(99 %)
8 diff
(98.0 %id)
? Gene Summary Gene on genome mRNA:.a, .b-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI