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Gene CHST2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
153 supporting clones for gene CHST2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AB021124 placenta .a 1 to 3536 1 to 3535 exact tiling clone,   3535/3535
(100 %)
11 diff
(99.7 %id)
BI603078 brain, hypothalamus .a 433 to 1166 7 to 731       725/778
(93 %)
16 diff
(98.0 %id)
BI667009 brain, hypothalamus .a 433 to 936 7 to 510   tiling clone,   504/510
(98 %)
6 diff
(98.9 %id)
TI_45216497   .a 433 to 1219 129 to 900       772/900
(85 %)
6 diff
(99.4 %id)
TI_44343116   .a 433 to 936 132 to 635       504/635
(79 %)
6 diff
(99.1 %id)
BX387933   .a 446 to 1280 1 to 833       833/833
(100 %)
21 diff
(97.5 %id)
AL544443 placenta, Placenta Cot 25-normalized .a 459 to 1367 1 to 898       898/901
(99 %)
22 diff
(97.6 %id)
DA829756 placenta .a 479 to 874 2 to 397   capped   396/396
(100 %)
0 diff
(100 %id)
TI_45210337   .a 486 to 1202 81 to 804       724/805
(89 %)
6 diff
(99.3 %id)
BI603819 brain, hypothalamus .a 491 to 1202 1 to 718   available from MGC,   718/719
(99 %)
6 diff
(99.2 %id)
BG768624 melanotic melanoma, high MDR (cell line), skin .a 493 to 1213 1 to 727   available from MGC,   727/890
(81 %)
31 diff
(96.6 %id)
DA503728 brain .a 494 to 748 2 to 256   capped   255/255
(100 %)
2 diff
(99.3 %id)
BC042160 Skin, melanotic melanoma, high MDR. .a 494 to 3520 1 to 3028 V275G D276G D277R R278P V279R ... available from MGC, AAA   3028/3028
(100 %)
1 diff
(100.0 %id)
AK023268   .a 496 to 3524 1 to 3029 A139T available from FLJ,   3029/3029
(100 %)
2 diff
(100.0 %id)
BC068604 Brain, hypothalamus .a 496 to 3536 1 to 3041 exact available from MGC, AAA   3041/3041
(100 %)
3 diff
(100.0 %id)
NM_004267.3   .a 496 to 3541 1 to 3046 exact RefSeq,   3046/3046
(100 %)
2 diff
(100.0 %id)
DA116514 cerebellum .a 497 to 1078 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DA391811 thalamus .a 497 to 859 2 to 367   capped   366/366
(100 %)
4 diff
(99.0 %id)
AU132526   .a 497 to 1185 2 to 698   capped   697/699
(99 %)
12 diff
(98.3 %id)
DB501755 hypothalamus .a 499 to 968 1 to 470       470/471
(99 %)
4 diff
(99.2 %id)
BM787694 stomach .a 499 to 1012 1 to 512       512/512
(100 %)
2 diff
(99.7 %id)
CF125160 Chondrosarcoma Lung Metastasis cell lines, lung .a 507 to 936 1 to 430       430/430
(100 %)
7 diff
(98.4 %id)
TI_154186673   .a 507 to 1075 52 to 622       571/795
(71 %)
34 diff
(95.8 %id)
CR994079 T-Lymphocytes .a 515 to 745 1 to 231       231/231
(100 %)
0 diff
(100 %id)
BI918797 brain .a 529 to 1200 1 to 683   available from MGC,   683/999
(68 %)
36 diff
(96.4 %id)
TI_57241338   .a 529 to 1200 1 to 683       683/999
(68 %)
36 diff
(96.4 %id)
BC036930 Brain, fetal, whole pooled .a 535 to 3520 1 to 2984 exact tiling clone, available from MGC, AAA   2984/2984
(100 %)
1 diff
(100.0 %id)
CN430789 embryonic stem cells, cell lines H1, H7, andH9 .a 541 to 702 1 to 162       162/162
(100 %)
0 diff
(100 %id)
CV575260 cornea, eye .a 624 to 1241 1 to 618       618/618
(100 %)
1 diff
(99.9 %id)
CN430787 embryonic stem cells, cell lines H1, H7, andH9 .a 626 to 1134 1 to 510       510/510
(100 %)
1 diff
(99.9 %id)
BG326248 Kidney, renal cell adenocarcinoma .a 764 to 1345 1 to 582   available from MGC,   582/582
(100 %)
1 diff
(99.9 %id)
BC017499 Kidney, renal cell adenocarcinoma .a 765 to 3520 1 to 2756 exact available from MGC, AAA   2756/2756
(100 %)
0 diff
(100 %id)
AL553242 placenta, Placenta Cot 25-normalized .a 934 to 1766 1 to 822       822/832
(98 %)
20 diff
(97.6 %id)
DR004386 placenta .a 1011 to 1707 1 to 698       698/698
(100 %)
6 diff
(99.2 %id)
CX163004 human embryonic stem cells differentiated toan early endodermal cell type .a 1018 to 1804 1 to 787       787/787
(100 %)
0 diff
(100 %id)
AB014679 brain .a 1137 to 3520 1 to 2384 exact AAA   2384/2384
(100 %)
0 diff
(100 %id)
AB014680 brain .a 1137 to 3520 1 to 2384 exact AAA   2384/2384
(100 %)
0 diff
(100 %id)
TI_154195282   .a 1201 to 2050 14 to 858       845/1057
(79 %)
38 diff
(96.5 %id)
AF083066 umbilical vein endothelium .a 1328 to 3538 1 to 2211 exact     2211/2227
(99 %)
1 diff
(100.0 %id)
TI_1241108569   .a 1359 to 2356 39 to 1034       996/1184
(84 %)
14 diff
(98.9 %id)
TI_1241108573   .a 1359 to 2353 41 to 1034       994/1236
(80 %)
10 diff
(99.2 %id)
BC105010 Brain, cerebellum, PCR rescued clones .a 1366 to 2999 1 to 1634 exact     1634/1634
(100 %)
0 diff
(100 %id)
BC105012 Brain, cerebellum, PCR rescued clones .a 1366 to 2999 1 to 1634 exact     1634/1634
(100 %)
0 diff
(100 %id)
CO247107 Chondrosarcoma Lung Metastasis cell lines, lung .a 1508 to 2144 1 to 636       636/820
(77 %)
10 diff
(98.8 %id)
BX327981 Placenta Cot 25-normalized .a 1570 to 2002 1 to 435       435/517
(84 %)
19 diff
(96.4 %id)
BM910469 astrocytoma grade IV, cell line, brain .a 1631 to 2215 1 to 590       590/1339
(44 %)
16 diff
(98.9 %id)
BI115837 lung, small cell carcinoma .a 1824 to 2472 1 to 653       653/714
(91 %)
26 diff
(96.4 %id)
BF344303 brain, glioblastoma with EGFR amplification .a 1872 to 2532 1 to 662       662/662
(100 %)
11 diff
(98.4 %id)
AA243229 brain, neuroepithelial cells .a 1878 to 2165 1 to 284       284/284
(100 %)
7 diff
(97.6 %id)
BG255214 adenocarcinoma, cell line, Prostate .a 2034 to 2532 1 to 504       504/504
(100 %)
6 diff
(98.9 %id)
BP303099   .a 2039 to 2620 1 to 582       582/582
(100 %)
0 diff
(100 %id)
AU279547   .a 2053 to 2526 1 to 474       474/474
(100 %)
0 diff
(100 %id)
BI468322 insulinoma, Pancreas .a 2101 to 2593 1 to 494       494/494
(100 %)
9 diff
(98.2 %id)
CK820362 insulinoma, Pancreas .a 2101 to 2668 1 to 568       568/568
(100 %)
6 diff
(99.0 %id)
CD515007 White Matter .a 2132 to 2994 1 to 883       883/910
(97 %)
34 diff
(96.3 %id)
BG766962 melanotic melanoma, high MDR (cell line), skin .a 2163 to 2866 1 to 702       702/702
(100 %)
9 diff
(98.8 %id)
TI_1241109061   .a 2172 to 3000 15 to 841       827/1272
(65 %)
6 diff
(99.6 %id)
TI_1241109057   .a 2179 to 2999 17 to 836       820/1264
(64 %)
4 diff
(99.7 %id)
AL120609 amygdala .a 2190 to 2730 1 to 542       542/542
(100 %)
1 diff
(99.9 %id)
BF932032 nervous_tumor .a 2191 to 2387 197 to 1     Submitted on the opposite strand 197/197
(100 %)
2 diff
(99.0 %id)
TI_57150798   .a 2234 to 3027 21 to 811       791/811
(97 %)
8 diff
(99.1 %id)
BI760999 pooled colon, kidney, stomach .a 2243 to 3027 1 to 782       782/782
(100 %)
3 diff
(99.7 %id)
BM549714 leukocyte .a 2254 to 3192 15 to 966       952/1042
(91 %)
29 diff
(97.3 %id)
BI835881 pooled pancreas and spleen .a 2260 to 3041 1 to 784       784/791
(99 %)
8 diff
(99.0 %id)
TI_57166371   .a 2260 to 3041 71 to 854       784/861
(91 %)
8 diff
(99.1 %id)
BE794921 lung, small cell carcinoma .a 2357 to 3162 1 to 800       800/965
(82 %)
23 diff
(97.7 %id)
AW192779 adenocarcinoma, Pancreas .a 2360 to 2855 508 to 1       508/508
(100 %)
55 diff
(89.2 %id)
AA301111 testis .a 2366 to 2550 1 to 184       184/184
(100 %)
2 diff
(99.0 %id)
AL576297 placenta, Placenta Cot 25-normalized .a 2419 to 3523 1105 to 1       1105/1110
(99 %)
7 diff
(99.4 %id)
BU623278 cell lines, Chondrosarcoma .a 2443 to 3114 690 to 19   AAA   672/672
(100 %)
0 diff
(100 %id)
BE208539 lung, small cell carcinoma .a 2459 to 2974 1 to 516       516/516
(100 %)
0 diff
(100 %id)
AL570571 placenta, Placenta Cot 25-normalized .a 2530 to 3508 962 to 1       962/987
(97 %)
21 diff
(97.9 %id)
BQ581354 insulinoma, Pancreas .a 2547 to 3018 22 to 493   fully sequenced,   472/493
(95 %)
5 diff
(99.0 %id)
CX755523 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 2570 to 3169 1 to 606     Submitted on the opposite strand 606/767
(79 %)
67 diff
(91.3 %id)
BF948442 nervous_normal .a 2571 to 2815 1 to 247       247/247
(100 %)
11 diff
(95.6 %id)
AA370075 Prostate .a 2575 to 2767 1 to 193       193/193
(100 %)
1 diff
(99.5 %id)
BX109981 lung .a 2575 to 3277 1 to 704       704/708
(99 %)
3 diff
(99.6 %id)
W07003 lung .a 2575 to 2844 1 to 273       273/273
(100 %)
11 diff
(96.0 %id)
CR741976 liver and spleen .a 2598 to 3329 1 to 732       732/739
(99 %)
3 diff
(99.6 %id)
H50963 liver and spleen .a 2599 to 3001 1 to 408       408/413
(98 %)
13 diff
(96.9 %id)
TI_227716974   .a 2630 to 3536 1012 to 111   AAA   902/1018
(88 %)
13 diff
(98.8 %id)
BF953981 nervous_normal .a 2658 to 3067 454 to 43       412/455
(90 %)
0 diff
(100 %id)
CA390026 eye, RPE/choroid .a 2659 to 3175 1 to 517       517/517
(100 %)
0 diff
(100 %id)
CN430788 embryonic stem cells, DMSO-treated H9 cellline .a 2666 to 2928 1 to 263       263/263
(100 %)
1 diff
(99.7 %id)
AW297253   .a 2672 to 3061 407 to 18   AAA   390/390
(100 %)
0 diff
(100 %id)
BM930708 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2674 to 3061 1 to 388   AAA   388/388
(100 %)
0 diff
(100 %id)
AA449208   .a 2686 to 2940 1 to 253       253/253
(100 %)
2 diff
(99.3 %id)
AV752110 Pituitary .a 2694 to 3307 1 to 616       616/668
(92 %)
22 diff
(96.8 %id)
AV752369 Pituitary .a 2704 to 3390 1 to 676       676/772
(87 %)
14 diff
(98.2 %id)
W22029 eye, retina .a 2721 to 3373 673 to 21       653/675
(96 %)
0 diff
(100 %id)
N51129 multiple sclerosis lesions .a 2744 to 3043 1 to 300       300/300
(100 %)
9 diff
(97.0 %id)
TI_154135173   .a 2779 to 3527 828 to 82   AAA   747/942
(79 %)
31 diff
(96.8 %id)
AW084874 esophagus, squamous cell carcinoma .a 2845 to 3537 694 to 1       694/705
(98 %)
7 diff
(99.1 %id)
CD364331 Alveolar Macrophage, lung .a 2850 to 3536 703 to 19   AAA   685/685
(100 %)
3 diff
(99.6 %id)
BQ446461 Knee, Osteoarthritic Cartilage .a 2860 to 3536 694 to 19   AAA   676/676
(100 %)
2 diff
(99.8 %id)
AI870244 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 2867 to 3536 668 to 1       668/668
(100 %)
7 diff
(99.0 %id)
AW006712 Prostate .a 2871 to 3536 665 to 1       665/672
(98 %)
6 diff
(99.2 %id)
AW026423 brain, glioblastoma (pooled) .a 2879 to 3538 660 to 1       660/660
(100 %)
0 diff
(100 %id)
AA126782 uterus .a 2905 to 3521 610 to 1       610/610
(100 %)
35 diff
(94.3 %id)
CK003964 brain/CNS, Human Brain - Cerebellar Cortex .a 2911 to 3526 1 to 610       610/633
(96 %)
21 diff
(96.7 %id)
BE328570 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .a 2920 to 3536 614 to 1       614/620
(99 %)
28 diff
(95.5 %id)
BQ549486 insulinoma, Pancreas .a 2988 to 3517 530 to 1   fully sequenced,   530/530
(100 %)
4 diff
(99.3 %id)
BE645039 pooled .a 2990 to 3526 539 to 3       537/539
(99 %)
0 diff
(100 %id)
H89157 cochlea, ear .a 3007 to 3244 1 to 242   fully sequenced,   242/242
(100 %)
5 diff
(98.0 %id)
CK903208 insulinoma, Pancreas .a 3015 to 3527 513 to 1       513/513
(100 %)
3 diff
(99.5 %id)
BQ640443 eye, retina .a 3025 to 3520 8 to 504       497/504
(98 %)
6 diff
(98.9 %id)
T56257 fetal spleen, Spleen .a 3025 to 3536 516 to 1       516/523
(98 %)
8 diff
(98.5 %id)
BP398388 pancreatic islet .a 3028 to 3527 1 to 500     Submitted on the opposite strand 500/500
(100 %)
1 diff
(99.8 %id)
H89886 cochlea, ear .a 3043 to 3283 1 to 244   fully sequenced,   244/244
(100 %)
0 diff
(100 %id)
BG056606 brain, glioblastoma with probably TP53 mutation andwithout EGFR amplification .a 3047 to 3526 480 to 1       480/480
(100 %)
0 diff
(100 %id)
AI290268 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3052 to 3507 463 to 1       463/474
(97 %)
10 diff
(97.9 %id)
BM695999 eye, human retina .a 3066 to 3393 1 to 328       328/328
(100 %)
0 diff
(100 %id)
BM713972 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3066 to 3393 1 to 328       328/328
(100 %)
0 diff
(100 %id)
TI_151753458   .a 3066 to 3537 536 to 66   AAA   471/1172
(40 %)
7 diff
(99.5 %id)
N47867 multiple sclerosis lesions .a 3069 to 3521 454 to 1       454/454
(100 %)
4 diff
(99.2 %id)
BF108923 pooled .a 3076 to 3526 454 to 3       452/454
(99 %)
0 diff
(100 %id)
AI784543 uterus .a 3084 to 3527 444 to 1       444/444
(100 %)
0 diff
(100 %id)
AA973890 pooled germ cell tumors .a 3087 to 3525 439 to 1       439/439
(100 %)
2 diff
(99.6 %id)
DB572953 hypothalamus .a 3089 to 3536 1 to 448     Submitted on the opposite strand 448/448
(100 %)
0 diff
(100 %id)
BF477523 brain, glioblastoma (pooled) .a 3091 to 3521 431 to 1       431/431
(100 %)
0 diff
(100 %id)
N80041 lung .a 3099 to 3536 442 to 1       442/442
(100 %)
10 diff
(97.8 %id)
BF195119 brain, glioblastoma (pooled) .a 3099 to 3536 438 to 1       438/438
(100 %)
0 diff
(100 %id)
AW304895 brain, three pooled meningiomas .a 3106 to 3536 431 to 1       431/431
(100 %)
1 diff
(99.8 %id)
AI356890 brain, glioblastoma (pooled) .a 3114 to 3517 404 to 1       404/457
(88 %)
0 diff
(100 %id)
T48114 fetal spleen, Spleen .a 3124 to 3538 437 to 7       431/438
(98 %)
0 diff
(100 %id)
DB532280 hippocampus .a 3127 to 3536 1 to 407     Submitted on the opposite strand 407/407
(100 %)
7 diff
(98.3 %id)
T35895 skin .a 3128 to 3418 1 to 291       291/291
(100 %)
0 diff
(100 %id)
AA380245 skin .a 3129 to 3392 1 to 264       264/264
(100 %)
0 diff
(100 %id)
T31577 colon, embryo .a 3129 to 3474 1 to 346       346/347
(99 %)
3 diff
(99.2 %id)
AW302278 brain, three pooled meningiomas .a 3132 to 3538 407 to 1       407/407
(100 %)
1 diff
(99.8 %id)
BI468321 insulinoma, Pancreas .a 3133 to 3536 430 to 26   AAA   405/405
(100 %)
6 diff
(98.6 %id)
AW732239 lung, small cell carcinoma .a 3157 to 3528 378 to 7       372/378
(98 %)
0 diff
(100 %id)
BP391314 pancreatic islet .a 3160 to 3524 1 to 365     Submitted on the opposite strand 365/365
(100 %)
0 diff
(100 %id)
AW874605 tumor, uterus .a 3171 to 3536 385 to 20   AAA   366/366
(100 %)
2 diff
(99.5 %id)
AI805387 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 3172 to 3524 374 to 22   AAA   353/353
(100 %)
2 diff
(99.5 %id)
AI440081 lymph node, lymphoma, follicular mixed small and largecell .a 3175 to 3524 350 to 1       350/350
(100 %)
0 diff
(100 %id)
AI797262 pooled .a 3177 to 3526 352 to 3       350/352
(99 %)
0 diff
(100 %id)
AI368451 brain, glioblastoma (pooled) .a 3181 to 3538 358 to 1       358/358
(100 %)
0 diff
(100 %id)
AI003055   .a 3187 to 3538 351 to 1       351/351
(100 %)
1 diff
(99.8 %id)
BF055977 pooled .a 3188 to 3538 351 to 1       351/351
(100 %)
0 diff
(100 %id)
AA243167 brain, neuroepithelial cells .a 3189 to 3536 347 to 1       347/347
(100 %)
2 diff
(99.5 %id)
AI354485 follicular lymphoma, lymph node .a 3201 to 3536 362 to 27   AAA   336/336
(100 %)
4 diff
(98.9 %id)
BP398579 pancreatic islet .a 3212 to 3536 8 to 332     Submitted on the opposite strand 325/332
(97 %)
6 diff
(98.2 %id)
AA582666 Kidney, kidney tumor .a 3212 to 3527 337 to 22   AAA   316/316
(100 %)
0 diff
(100 %id)
H88931 cochlea, ear .a 3214 to 3505 292 to 1   fully sequenced,   292/292
(100 %)
3 diff
(99.0 %id)
M79009   .a 3231 to 3539 311 to 1   tiling clone,   311/311
(100 %)
5 diff
(98.4 %id)
AU154034   .a 3236 to 3524 289 to 1       289/289
(100 %)
1 diff
(99.7 %id)
AA918884 Kidney .a 3248 to 3527 280 to 1       280/280
(100 %)
3 diff
(99.0 %id)
AU156572 placenta .a 3250 to 3536 288 to 1       288/289
(99 %)
3 diff
(99.0 %id)
H89887 cochlea, ear .a 3253 to 3477 225 to 1   fully sequenced,   225/225
(100 %)
5 diff
(97.8 %id)
AI805570 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 3257 to 3524 289 to 22   AAA   268/268
(100 %)
6 diff
(97.8 %id)
AA846040 Spleen .a 3270 to 3536 277 to 11   AAA   267/267
(100 %)
0 diff
(100 %id)
AI025213   .a 3270 to 3538 296 to 28       269/296
(90 %)
0 diff
(100 %id)
BQ185214 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3276 to 3536 279 to 19   AAA   261/313
(83 %)
6 diff
(98.1 %id)
AA449209   .a 3280 to 3526 249 to 3       247/249
(99 %)
0 diff
(100 %id)
AA682637 liver and spleen .a 3281 to 3517 237 to 1       237/237
(100 %)
0 diff
(100 %id)
FN158821 breast carcinoma .a 3314 to 3434 1 to 125       125/128
(97 %)
5 diff
(96.1 %id)
BF530376 anaplastic oligodendroglioma with 1p/19qloss, brain .a 3378 to 3538 13 to 173       161/186
(86 %)
2 diff
(99.0 %id)
CN430786 embryonic stem cells, cell lines H1, H7, andH9 Gene CHST2, variant not shown         Suspected internal deletion, this clone was ignored    
AL545973 placenta, Placenta Cot 25-normalized Gene CHST2, variant not shown         Suspected internal deletion, this clone was ignored    
AL571489 placenta, Placenta Cot 25-normalized Gene CHST2, variant not shown         Suspected internal deletion, this clone was ignored    
AL550256 placenta, Placenta Cot 25-normalized Gene CHST2, variant not shown         Suspected internal deletion, this clone was ignored    
AL574174 placenta, Placenta Cot 25-normalized Gene CHST2, variant not shown         Suspected internal deletion, this clone was ignored    
BQ637965 eye, retina Gene CHST2, variant not shown         Suspected internal deletion, this clone was ignored    
BQ640043 eye, retina Gene CHST2, variant not shown         Suspected internal deletion, this clone was ignored    
BM821037 stomach Gene CHST2, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes C