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Gene CHST1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
120 supporting clones for gene CHST1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BI596308 brain, hypothalamus .a 1 to 434 1 to 434       434/434
(100 %)
6 diff
(98.7 %id)
TI_45208910   .a 3 to 580 88 to 665       578/665
(86 %)
7 diff
(99.0 %id)
DB493321 hypothalamus .a 4 to 489 1 to 486   tiling clone,   486/493
(98 %)
9 diff
(98.2 %id)
BG701014 brain, hippocampus .a 32 to 528 1 to 507       507/507
(100 %)
20 diff
(96.1 %id)
BI548980 brain, hippocampus .a 33 to 434 1 to 402       402/402
(100 %)
5 diff
(98.8 %id)
TI_44166620   .a 34 to 747 83 to 797       715/797
(89 %)
9 diff
(98.9 %id)
BC022567 Brain, hippocampus .a 38 to 2755 1 to 2717 exact available from MGC, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 2717/2718
(99 %)
8 diff
(99.8 %id)
DB473722 hippocampus .a 38 to 485 1 to 448       448/448
(100 %)
1 diff
(99.8 %id)
NM_003654.4   .a 38 to 2755 1 to 2718 exact RefSeq, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 2718/2718
(100 %)
0 diff
(100 %id)
DB472079 hippocampus .a 42 to 393 1 to 352       352/363
(96 %)
4 diff
(98.9 %id)
DB478655 hippocampus .a 42 to 484 1 to 443       443/443
(100 %)
6 diff
(98.7 %id)
DB479658 hippocampus .a 48 to 529 1 to 480       480/480
(100 %)
13 diff
(97.3 %id)
TI_45212463   .a 50 to 746 83 to 787       705/787
(89 %)
24 diff
(97.0 %id)
BI602750 brain, hypothalamus .a 52 to 434 1 to 387       387/387
(100 %)
11 diff
(97.2 %id)
BI598621 brain, hypothalamus .a 54 to 434 6 to 410       405/410
(98 %)
6 diff
(98.6 %id)
TI_45215896   .a 54 to 574 83 to 636       552/776
(71 %)
14 diff
(98.2 %id)
DB496334 hypothalamus .a 56 to 526 1 to 470       470/470
(100 %)
2 diff
(99.6 %id)
BI603986 brain, hypothalamus .a 57 to 434 6 to 383       378/383
(98 %)
6 diff
(98.5 %id)
TI_45210250   .a 57 to 893 88 to 922       835/922
(90 %)
18 diff
(98.1 %id)
DA193787 amygdala .a 67 to 641 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
CD722840 eye, lacrimal gland .a 95 to 666 1 to 571   tiling clone,   571/572
(99 %)
2 diff
(99.7 %id)
DR003033 fetal brain .a 297 to 926 8 to 637   tiling clone,   630/637
(98 %)
6 diff
(99.1 %id)
AB003791 brain .a 342 to 2755 1 to 2412 exact tiling clone,   2412/2415
(99 %)
6 diff
(99.8 %id)
DB481191 hippocampus .a 360 to 793 1 to 434       434/434
(100 %)
0 diff
(100 %id)
BC028235 Brain, fetal, whole pooled .a 370 to 2755 1 to 2385 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 2385/2385
(100 %)
4 diff
(99.9 %id)
BI917296 brain .a 370 to 1149 1 to 779       779/779
(100 %)
6 diff
(99.3 %id)
TI_57242202   .a 370 to 1149 70 to 848       779/848
(91 %)
10 diff
(98.9 %id)
BE146001 head_neck .a 460 to 1019 561 to 1     Submitted on the opposite strand 561/564
(99 %)
12 diff
(97.9 %id)
BE146121 head_neck .a 480 to 1000 537 to 13     Submitted on the opposite strand 525/561
(93 %)
2 diff
(99.7 %id)
U65637   .a 585 to 2751 1 to 2166 exact AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 2166/2166
(100 %)
3 diff
(99.9 %id)
AF090137 umbilical vein endothelium .a 705 to 1945 1 to 1241 exact     1241/1241
(100 %)
1 diff
(100.0 %id)
CV024078 mixed .a 709 to 1335 1 to 627       627/627
(100 %)
1 diff
(99.9 %id)
BQ067314 pooled brain, lung, testis .a 810 to 1654 26 to 875       850/1169
(72 %)
18 diff
(98.5 %id)
BE146002 head_neck .a 887 to 1000 135 to 20     Submitted on the opposite strand 116/142
(81 %)
0 diff
(100 %id)
R55609 whole brain .a 970 to 1245 1 to 272       272/272
(100 %)
10 diff
(96.4 %id)
R16177 whole brain .a 970 to 1388 1 to 427     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 427/435
(98 %)
31 diff
(92.9 %id)
BM729192 eye, fetal eye .a 973 to 1558 1 to 586     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 586/586
(100 %)
1 diff
(99.9 %id)
BQ716781 sympathetic trunk .a 983 to 1736 1 to 758       758/916
(82 %)
17 diff
(98.2 %id)
BG751472 eye, normal pigmented retinal epithelium .a 1008 to 1311 1 to 304       304/304
(100 %)
5 diff
(98.4 %id)
BQ669099 epidermoid carcinoma, cell line, salivary gland .a 1401 to 2211 1 to 821   tiling clone,   821/828
(99 %)
17 diff
(98.0 %id)
TI_57219077   .a 1483 to 2176 40 to 734       695/734
(94 %)
6 diff
(99.2 %id)
BI754106 brain .a 1487 to 2176 1 to 691   tiling clone,   691/691
(100 %)
13 diff
(98.2 %id)
CD251396 brain, Pituitary .a 1516 to 2104 1 to 592       592/835
(70 %)
10 diff
(98.9 %id)
CV573292 cornea, eye .a 1529 to 1996 1 to 468       468/470
(99 %)
1 diff
(99.8 %id)
H16077 whole brain .a 1602 to 2078 1 to 480       480/482
(99 %)
17 diff
(96.5 %id)
R41023   .a 1710 to 2002 1 to 292       292/292
(100 %)
8 diff
(97.3 %id)
TI_149299514   .a 1888 to 2751 938 to 93   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 846/962
(87 %)
16 diff
(98.4 %id)
BM975834 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 2104 to 2751 660 to 16   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 645/645
(100 %)
4 diff
(99.4 %id)
AI692548 carcinoid, lung .a 2110 to 2579 1 to 469     Submitted on the opposite strand 469/469
(100 %)
4 diff
(99.2 %id)
BE503729 carcinoid, lung .a 2110 to 2574 1 to 464     Submitted on the opposite strand 464/464
(100 %)
3 diff
(99.4 %id)
BE503737 carcinoid, lung .a 2112 to 2644 1 to 532     Submitted on the opposite strand 532/532
(100 %)
3 diff
(99.5 %id)
BM682114 eye, fetal eye .a 2132 to 2751 634 to 16   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 619/619
(100 %)
2 diff
(99.7 %id)
BM711608 eye, human retina .a 2152 to 2660 11 to 518   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 508/518
(98 %)
6 diff
(98.9 %id)
CA413195 Chondrosarcoma Grade II, Left Pelvis .a 2178 to 2751 592 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 574/583
(98 %)
0 diff
(100 %id)
BF945179 nervous_normal .a 2179 to 2491 30 to 343       314/354
(88 %)
6 diff
(98.4 %id)
BF962522 nervous_normal .a 2179 to 2491 13 to 325       313/336
(93 %)
7 diff
(98.0 %id)
AW510923 pooled .a 2181 to 2755 579 to 5       575/579
(99 %)
0 diff
(100 %id)
TI_154075205   .a 2182 to 2748 654 to 86       569/668
(85 %)
0 diff
(100 %id)
BM665520 eye, human retina .a 2192 to 2660 486 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 468/468
(100 %)
1 diff
(99.8 %id)
AW959963   .a 2214 to 2724 1 to 511       511/519
(98 %)
5 diff
(99.1 %id)
AA348836 brain, right hemisphere .a 2215 to 2462 1 to 248       248/248
(100 %)
1 diff
(99.6 %id)
BE467344 carcinoid, lung .a 2231 to 2656 1 to 426     Submitted on the opposite strand 426/426
(100 %)
1 diff
(99.8 %id)
AI828098 anaplastic oligodendroglioma, brain .a 2237 to 2751 531 to 17   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 515/515
(100 %)
0 diff
(100 %id)
AI480258 pooled .a 2245 to 2753 512 to 4       509/512
(99 %)
0 diff
(100 %id)
DB568601 hypothalamus .a 2258 to 2748 1 to 491     Submitted on the opposite strand 491/492
(99 %)
2 diff
(99.6 %id)
AI701541 carcinoid, lung .a 2275 to 2753 480 to 2       479/480
(99 %)
0 diff
(100 %id)
AI571222 anaplastic oligodendroglioma, brain .a 2276 to 2755 492 to 13   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 480/480
(100 %)
0 diff
(100 %id)
DB543378 hippocampus .a 2278 to 2750 1 to 473     Submitted on the opposite strand 473/474
(99 %)
1 diff
(99.8 %id)
AI951017 breast, four pooled high-grade tumors, including twoprimary tumors and two metastatic to ovary .a 2278 to 2709 432 to 1       432/432
(100 %)
1 diff
(99.8 %id)
AI280113 pooled .a 2279 to 2753 478 to 4       475/478
(99 %)
0 diff
(100 %id)
BE350210 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .a 2279 to 2709 431 to 1       431/431
(100 %)
0 diff
(100 %id)
AI933050 anaplastic oligodendroglioma, brain .a 2289 to 2753 470 to 6       465/470
(98 %)
0 diff
(100 %id)
BE218973 carcinoid, lung .a 2289 to 2753 469 to 5       465/469
(99 %)
0 diff
(100 %id)
DB568235 hypothalamus .a 2290 to 2753 1 to 464     Submitted on the opposite strand 464/470
(98 %)
1 diff
(99.8 %id)
BE673880 carcinoid, lung .a 2292 to 2753 463 to 2       462/463
(99 %)
0 diff
(100 %id)
DB536518 hippocampus .a 2293 to 2753 1 to 466     Submitted on the opposite strand 466/468
(99 %)
18 diff
(96.2 %id)
DB567358 hypothalamus .a 2293 to 2755 1 to 463     Submitted on the opposite strand 463/463
(100 %)
1 diff
(99.8 %id)
DB542491 hippocampus .a 2297 to 2750 1 to 454     Submitted on the opposite strand 454/455
(99 %)
1 diff
(99.8 %id)
AA582419 Kidney, kidney tumor .a 2297 to 2750 454 to 1       454/454
(100 %)
0 diff
(100 %id)
DB540834 hippocampus .a 2299 to 2755 1 to 457     Submitted on the opposite strand 457/458
(99 %)
1 diff
(99.8 %id)
AA682945 schizophrenic brain S-11 frontal lobe .a 2299 to 2737 439 to 1       439/439
(100 %)
0 diff
(100 %id)
DB535949 hippocampus .a 2304 to 2750 1 to 447     Submitted on the opposite strand 447/448
(99 %)
19 diff
(95.8 %id)
R15740 whole brain .a 2307 to 2751 469 to 25   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 445/445
(100 %)
5 diff
(98.9 %id)
AI797769 pooled .a 2319 to 2753 439 to 5       435/439
(99 %)
0 diff
(100 %id)
DB537096 hippocampus .a 2321 to 2755 1 to 435     Submitted on the opposite strand 435/436
(99 %)
4 diff
(99.1 %id)
DB548373 hippocampus .a 2321 to 2750 1 to 430     Submitted on the opposite strand 430/431
(99 %)
2 diff
(99.6 %id)
AW301059 colon, moderately differentiated adenocarcinoma .a 2323 to 2751 448 to 21   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 428/428
(100 %)
1 diff
(99.8 %id)
DB547320 hippocampus .a 2324 to 2755 1 to 431     Submitted on the opposite strand 431/432
(99 %)
2 diff
(99.6 %id)
DB564040 hypothalamus .a 2329 to 2755 1 to 426     Submitted on the opposite strand 426/427
(99 %)
12 diff
(97.2 %id)
AJ710300 heart .a 2331 to 2748 1 to 418   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 418/418
(100 %)
3 diff
(99.3 %id)
DB532235 hippocampus .a 2347 to 2755 1 to 405     Submitted on the opposite strand 405/406
(99 %)
10 diff
(97.6 %id)
F32352 pectoral muscle (after mastectomy) .a 2349 to 2630 20 to 301       282/301
(93 %)
6 diff
(98.1 %id)
DB533252 hippocampus .a 2353 to 2753 10 to 409     Submitted on the opposite strand 400/411
(97 %)
6 diff
(98.6 %id)
BQ003703 Chondrosarcoma, Left Pelvis .a 2357 to 2751 412 to 16   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 397/399
(99 %)
5 diff
(98.8 %id)
DB534578 hippocampus .a 2359 to 2755 1 to 395     Submitted on the opposite strand 395/396
(99 %)
9 diff
(97.8 %id)
TI_153991948   .a 2361 to 2749 470 to 82   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 389/895
(43 %)
0 diff
(100 %id)
AI698458 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 2375 to 2660 286 to 1       286/286
(100 %)
0 diff
(100 %id)
BM711767 eye, human retina .a 2380 to 2751 1 to 372   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 372/372
(100 %)
0 diff
(100 %id)
AI554826 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 2381 to 2709 329 to 1       329/329
(100 %)
6 diff
(98.2 %id)
AW518580 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 2430 to 2755 328 to 3       326/328
(99 %)
0 diff
(100 %id)
AI570525 anaplastic oligodendroglioma, brain .a 2435 to 2751 317 to 1       317/317
(100 %)
0 diff
(100 %id)
AI656107 pooled germ cell tumors .a 2435 to 2751 332 to 16   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 317/317
(100 %)
1 diff
(99.7 %id)
AW005528 anaplastic oligodendroglioma, brain .a 2435 to 2751 317 to 1       317/317
(100 %)
0 diff
(100 %id)
AA348835 brain, right hemisphere .a 2438 to 2751 316 to 1       316/318
(99 %)
3 diff
(99.1 %id)
H05595 whole brain .a 2462 to 2751 313 to 16   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 298/303
(98 %)
8 diff
(97.4 %id)
AW196477 pooled germ cell tumors .a 2465 to 2751 287 to 1       287/287
(100 %)
0 diff
(100 %id)
AI684515 pooled .a 2468 to 2759 295 to 4   tiling clone,   292/295
(98 %)
0 diff
(100 %id)
AW469693 pooled .a 2474 to 2753 283 to 4       280/283
(98 %)
0 diff
(100 %id)
AW235312 pooled germ cell tumors .a 2476 to 2755 280 to 1       280/280
(100 %)
0 diff
(100 %id)
DB531248 hippocampus .a 2499 to 2750 1 to 251     Submitted on the opposite strand 251/252
(99 %)
19 diff
(92.5 %id)
AW002384 pooled germ cell tumors .a 2546 to 2747 223 to 22   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 202/205
(98 %)
0 diff
(100 %id)
DB564408 hypothalamus .a 2572 to 2748 1 to 177     Submitted on the opposite strand 177/178
(99 %)
2 diff
(98.9 %id)
DB497493 hypothalamus .b 1 to 508 1 to 508   tiling clone,   508/508
(100 %)
4 diff
(99.3 %id)
BF967068 brain, hypothalamus .b 54 to 735 6 to 677 R14T C17M C18L R19T R21D ... tiling clone,   577/914
(63 %)
32 diff
(96.5 %id)
AK311168 amygdala .c 1 to 1360 2 to 1361 exact tiling clone,   1361/1361
(100 %)
1 diff
(100.0 %id)
BM552868 brain, medulla .d 1 to 516 10 to 524 exact tiling clone,   515/1237
(41 %)
7 diff
(99.5 %id)
AA868063   .d 128 to 516 388 to 2 exact tiling clone,   387/388
(99 %)
2 diff
(99.5 %id)
AI269756 pooled .d 216 to 516 303 to 3 exact     301/303
(99 %)
0 diff
(100 %id)
AI016965 pooled .d 285 to 515 231 to 1       231/231
(100 %)
3 diff
(98.8 %id)
AW207664   .e-u 1 to 399 418 to 20 exact tiling clone, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 399/401
(99 %)
2 diff
(99.6 %id)
BE146386 head_neck Gene CHST1, variant not shown         Suspected internal deletion, this clone was ignored    
BI755608 brain Gene CHST1, variant not shown         This clone was ignored    
TI_57218619   Gene CHST1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI