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Gene CHRNA2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
174 supporting clones for gene CHRNA2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA405532 thalamus .a 1 to 360 8 to 367   tiling clone, capped   360/565
(63 %)
4 diff
(99.3 %id)
NM_000742.3   .a 1 to 4066 1 to 4066 exact RefSeq, AAA   4066/4066
(100 %)
0 diff
(100 %id)
DA407151 thalamus .a 2 to 548 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DA416584 thalamus .a 10 to 494 2 to 486   capped   485/486
(99 %)
2 diff
(99.6 %id)
DA099233 cerebellum .a 11 to 499 2 to 490   capped   489/489
(100 %)
0 diff
(100 %id)
DA416001 thalamus .a 11 to 572 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DA412287 thalamus .a 13 to 499 2 to 488   capped   487/487
(100 %)
0 diff
(100 %id)
DA407599 thalamus .a 21 to 576 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DA418350 thalamus .a 25 to 585 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA219582 brain .a 27 to 589 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DC335312 hippocampus .a 28 to 612 1 to 585       585/585
(100 %)
0 diff
(100 %id)
DC335935 hippocampus .a 28 to 614 1 to 588       588/588
(100 %)
2 diff
(99.7 %id)
DA398654 thalamus .a 29 to 580 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA402945 thalamus .a 29 to 600 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA403895 thalamus .a 29 to 530 2 to 505   capped   504/504
(100 %)
2 diff
(99.7 %id)
DA406534 thalamus .a 31 to 582 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA414608 thalamus .a 31 to 577 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DA391359 thalamus .a 33 to 608 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA402299 thalamus .a 33 to 588 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DC308585 cerebellum .a 34 to 612 1 to 579       579/579
(100 %)
2 diff
(99.7 %id)
DA246019 brain .a 35 to 591 2 to 558   capped   557/557
(100 %)
3 diff
(99.5 %id)
DC322797 brain .a 36 to 683 1 to 648       648/648
(100 %)
0 diff
(100 %id)
DC343486 thalamus .a 36 to 638 1 to 601       601/601
(100 %)
2 diff
(99.7 %id)
DC343623 thalamus .a 36 to 696 1 to 661       661/661
(100 %)
1 diff
(99.9 %id)
DA210983 brain .a 37 to 604 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA404654 thalamus .a 37 to 589 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
DC343651 thalamus .a 38 to 660 1 to 624       624/624
(100 %)
3 diff
(99.6 %id)
BP362682 thalamus .a 38 to 619 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA221726 brain .a 39 to 598 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DC335679 hippocampus .a 39 to 637 1 to 599       599/599
(100 %)
1 diff
(99.9 %id)
DA399310 thalamus .a 39 to 602 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA407828 thalamus .a 39 to 584 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA401286 thalamus .a 41 to 598 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA404342 thalamus .a 41 to 600 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA413913 thalamus .a 45 to 588 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA408940 thalamus .a 50 to 600 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA514694 brain .a 52 to 591 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA402492 thalamus .a 53 to 625 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DR003752 heart .a 59 to 761 1 to 703       703/703
(100 %)
5 diff
(99.3 %id)
DA324220 hippocampus .a 60 to 600 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA413555 thalamus .a 60 to 589 2 to 531   capped   530/530
(100 %)
0 diff
(100 %id)
DA408579 thalamus .a 61 to 600 2 to 542   capped   541/541
(100 %)
2 diff
(99.7 %id)
DA185274 amygdala .a 62 to 603 2 to 543   capped   542/543
(99 %)
2 diff
(99.7 %id)
DA387727 thalamus .a 62 to 632 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA415642 thalamus .a 62 to 619 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA236701 brain .a 65 to 630 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA408456 thalamus .a 65 to 633 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA414067 thalamus .a 65 to 617 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA398627 thalamus .a 68 to 619 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA409685 thalamus .a 77 to 630 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA100645 cerebellum .a 78 to 670 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DA321786 hippocampus .a 78 to 589 2 to 513   capped   512/512
(100 %)
0 diff
(100 %id)
DA232376 brain .a 80 to 635 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA390403 thalamus .a 84 to 650 2 to 568   capped   567/569
(99 %)
1 diff
(99.9 %id)
DA402215 thalamus .a 84 to 630 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA406543 thalamus .a 84 to 640 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA411437 thalamus .a 84 to 636 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA415812 thalamus .a 84 to 628 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA872537 Prostate .a 84 to 624 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA105240 cerebellum .a 86 to 637 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA182194 amygdala .a 86 to 657 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA197010 amygdala .a 86 to 656 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA398742 thalamus .a 86 to 638 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA399045 thalamus .a 86 to 600 2 to 516   capped   515/515
(100 %)
0 diff
(100 %id)
DA401412 thalamus .a 86 to 619 2 to 535   capped   534/534
(100 %)
1 diff
(99.9 %id)
DA403865 thalamus .a 86 to 641 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA405383 thalamus .a 86 to 600 2 to 516   capped   515/515
(100 %)
0 diff
(100 %id)
DA407916 thalamus .a 86 to 634 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA410285 thalamus .a 86 to 650 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA412490 thalamus .a 86 to 622 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DA417701 thalamus .a 86 to 645 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA415269 thalamus .a 87 to 640 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA326123 hippocampus .a 99 to 600 2 to 503   capped   502/502
(100 %)
0 diff
(100 %id)
DA400950 thalamus .a 99 to 658 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA414015 thalamus .a 99 to 655 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA415605 thalamus .a 99 to 733 2 to 636   capped   635/635
(100 %)
0 diff
(100 %id)
DA416983 thalamus .a 99 to 589 2 to 492   capped   491/491
(100 %)
0 diff
(100 %id)
DA405699 thalamus .a 122 to 684 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DA401371 thalamus .a 123 to 589 2 to 468   capped   467/467
(100 %)
0 diff
(100 %id)
DA415512 thalamus .a 123 to 681 2 to 560   capped   559/560
(99 %)
3 diff
(99.5 %id)
DA408958 thalamus .a 125 to 778 2 to 655   capped   654/654
(100 %)
3 diff
(99.6 %id)
DA397633 thalamus .a 128 to 708 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
DA397746 thalamus .a 132 to 710 2 to 580   capped   579/579
(100 %)
3 diff
(99.5 %id)
DA410044 thalamus .a 133 to 637 39 to 543   capped   505/542
(93 %)
6 diff
(98.9 %id)
DA218734 brain .a 134 to 665 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DA219603 brain .a 134 to 700 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA239649 brain .a 134 to 727 2 to 595   capped   594/594
(100 %)
2 diff
(99.7 %id)
DA391140 thalamus .a 134 to 708 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA391366 thalamus .a 134 to 709 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA400662 thalamus .a 134 to 665 2 to 534   capped   533/533
(100 %)
1 diff
(99.9 %id)
DA401402 thalamus .a 134 to 698 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA413329 thalamus .a 134 to 600 2 to 468   capped   467/467
(100 %)
0 diff
(100 %id)
DA417872 thalamus .a 134 to 705 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA387047 thalamus .a 136 to 708 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA390089 thalamus .a 144 to 723 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
DA404421 thalamus .a 144 to 708 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA407759 thalamus .a 144 to 691 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA415695 thalamus .a 144 to 710 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA418313 thalamus .a 144 to 600 2 to 458   capped   457/457
(100 %)
0 diff
(100 %id)
DA418893 thalamus .a 144 to 712 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA413698 thalamus .a 146 to 680 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DA389525 thalamus .a 151 to 472 2 to 323   capped   322/322
(100 %)
0 diff
(100 %id)
DA389272 thalamus .a 169 to 742 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA392041 thalamus .a 169 to 738 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA398082 thalamus .a 211 to 784 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA404774 thalamus .a 229 to 712 30 to 513   capped   488/512
(95 %)
6 diff
(98.9 %id)
DA407389 thalamus .a 238 to 794 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA370439 thalamus .a 281 to 834 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA399121 thalamus .a 281 to 842 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA401689 thalamus .a 281 to 837 2 to 561   capped   560/560
(100 %)
4 diff
(99.3 %id)
DA401850 thalamus .a 308 to 836 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
DA407653 thalamus .a 315 to 862 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DA240127 brain .a 317 to 886 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA407864 thalamus .a 317 to 863 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA390384 thalamus .a 329 to 899 2 to 572   tiling clone, capped   571/571
(100 %)
2 diff
(99.7 %id)
DA405315 thalamus .a 351 to 905 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA400940 thalamus .a 360 to 923 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA226769 brain .a 362 to 918 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA401711 thalamus .a 368 to 920 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA402826 thalamus .a 375 to 974 2 to 601   capped   600/600
(100 %)
5 diff
(99.2 %id)
DA399002 thalamus .a 376 to 947 2 to 574   capped   573/573
(100 %)
3 diff
(99.5 %id)
DA405086 thalamus .a 376 to 932 2 to 558   capped   557/557
(100 %)
3 diff
(99.5 %id)
DA406837 thalamus .a 377 to 938 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA397789 thalamus .a 379 to 950 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA414280 thalamus .a 380 to 939 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DA399528 thalamus .a 381 to 932 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA406725 thalamus .a 381 to 945 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA408177 thalamus .a 392 to 922 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
DA349049 substantia nigra .a 402 to 963 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DB171860 kidney, tumor tissue .a 402 to 871 2 to 471   capped   470/470
(100 %)
1 diff
(99.8 %id)
DA399956 thalamus .a 410 to 963 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DB173801 kidney, tumor tissue .a 410 to 995 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DA415612 thalamus .a 411 to 1051 2 to 642   capped   641/641
(100 %)
1 diff
(99.9 %id)
DA408320 thalamus .a 439 to 992 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA387630 thalamus .a 444 to 1028 2 to 586   capped   585/585
(100 %)
2 diff
(99.7 %id)
DA408361 thalamus .a 447 to 981 2 to 536   capped   535/538
(99 %)
1 diff
(99.9 %id)
DB178588 kidney, tumor tissue .a 455 to 1005 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
BC153866 PCR rescued clones .a 575 to 2700 1 to 2126 exact tiling clone,   2126/2126
(100 %)
0 diff
(100 %id)
DA096824 cerebellum .a 610 to 1094 2 to 486   capped   485/485
(100 %)
0 diff
(100 %id)
Y16281   .a 610 to 2199 1 to 1590 T125A     1590/1590
(100 %)
1 diff
(100.0 %id)
DA395530 thalamus .a 1150 to 1648 2 to 500   capped   499/499
(100 %)
0 diff
(100 %id)
DA387253 thalamus .a 1414 to 2000 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DA386934 thalamus .a 1603 to 2147 2 to 547   capped   546/546
(100 %)
2 diff
(99.7 %id)
CF141093 CNCAP(3)T-225 cell line, Prostate .a 2272 to 2569 10 to 305       296/305
(97 %)
6 diff
(98.1 %id)
CR739760 Prostate .a 2791 to 3274 1 to 484   tiling clone,   484/484
(100 %)
1 diff
(99.8 %id)
TI_151775828   .a 2995 to 3586 88 to 686   tiling clone,   599/1221
(49 %)
32 diff
(97.4 %id)
BF753057 breast_normal .a 3387 to 3822 435 to 2     Submitted on the opposite strand 434/435
(99 %)
0 diff
(100 %id)
BM676312 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3412 to 4047 649 to 15   tiling clone, AAA   635/635
(100 %)
3 diff
(99.6 %id)
BU732676 eye, optic nerve .a 3462 to 4047 604 to 19   AAA   586/603
(97 %)
2 diff
(99.7 %id)
TI_151770495   .a 3462 to 4046 109 to 693   tiling clone, AAA   585/585
(100 %)
4 diff
(99.4 %id)
AI810610 Prostate .a 3532 to 4047 516 to 1       516/516
(100 %)
3 diff
(99.5 %id)
AI685923 Prostate .a 3601 to 4067 468 to 2   tiling clone,   467/468
(99 %)
0 diff
(100 %id)
AI914245 carcinoid, lung .a 3641 to 4064 424 to 1       424/433
(97 %)
2 diff
(99.6 %id)
AI333071 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3675 to 4047 373 to 1       373/373
(100 %)
1 diff
(99.8 %id)
AW292180   .a 3762 to 4066 322 to 18   AAA   305/305
(100 %)
3 diff
(99.1 %id)
AK296348 thalamus .b 1 to 1735 1 to 1735 T110A tiling clone,   1735/1735
(100 %)
1 diff
(100.0 %id)
DC342542 thalamus .b 1 to 513 1 to 513       513/513
(100 %)
1 diff
(99.9 %id)
DA412040 thalamus .c 1 to 561 2 to 563   tiling clone, capped   562/562
(100 %)
1 diff
(99.9 %id)
CD013901   .c 518 to 2813 1 to 2296 T103A tiling clone,   2296/2296
(100 %)
2 diff
(100.0 %id)
AK314787 thalamus .d 1 to 1984 1 to 1984 T125A tiling clone,   1984/1984
(100 %)
1 diff
(100.0 %id)
DC342913 thalamus .e 1 to 576 1 to 576   tiling clone,   576/576
(100 %)
1 diff
(99.9 %id)
CD013902   .e 302 to 2411 1 to 2110 T125A tiling clone,   2110/2110
(100 %)
2 diff
(100.0 %id)
CD013903   .e 302 to 2411 1 to 2110 T125A     2110/2110
(100 %)
2 diff
(100.0 %id)
BQ884264 sciatic nerve .f-u 1 to 496 1 to 496 exact tiling clone, AAA   496/496
(100 %)
0 diff
(100 %id)
DA404257 thalamus .g 1 to 575 2 to 576 exact tiling clone, capped   575/575
(100 %)
0 diff
(100 %id)
DB149293 thymus .h 1 to 544 2 to 545 exact tiling clone, capped   544/544
(100 %)
0 diff
(100 %id)
DC298316 adrenal gland .i 1 to 555 1 to 555 exact     555/555
(100 %)
0 diff
(100 %id)
AK308465 adrenal gland .i 1 to 1468 1 to 1468 exact tiling clone,   1468/1468
(100 %)
3 diff
(99.8 %id)
DC344030 thalamus .j 1 to 546 1 to 546 exact tiling clone,   546/546
(100 %)
0 diff
(100 %id)
DA395913 thalamus .k 1 to 598 2 to 599 exact tiling clone, capped   598/598
(100 %)
0 diff
(100 %id)
DC344482 thalamus .l 1 to 579 1 to 579 R10S tiling clone,   579/579
(100 %)
2 diff
(99.7 %id)
CD013904   Gene CHRNA2, variant not shown         This clone was ignored    
CD013905   Gene CHRNA2, variant not shown         This clone was ignored    
U62431 thalamus Gene CHRNA2, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g, .h, .i, .j, .k, .l Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI