To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene CHRM5TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
36 supporting clones for gene CHRM5 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA251611 caudate nucleus CHRM5.a 1 to 551 2 to 551   capped   550/550
(100 %)
3 diff
(99.5 %id)
DA328010 hippocampus CHRM5.a 1 to 411 2 to 412   tiling clone, capped   411/411
(100 %)
2 diff
(99.6 %id)
AK095198 subthalamic nucleus CHRM5.a 387 to 2598 1 to 2212   tiling clone, available from FLJ,   2212/2212
(100 %)
0 diff
(100 %id)
DA330421 hippocampus CHRM5.a 387 to 953 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
NM_012125.3   CHRM5.a 387 to 3425 1 to 3039 exact RefSeq, AAA   3039/3039
(100 %)
0 diff
(100 %id)
DA355246 subthalamic nucleus CHRM5.a 388 to 943 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
CB994866 placenta, pre-eclamptic placenta CHRM5.a 748 to 1345 27 to 624       598/650
(92 %)
7 diff
(99.0 %id)
BC068528 Placenta, pre-eclamptic CHRM5.a 749 to 3428 1 to 2680 L212P tiling clone, available from MGC, AAA   2680/2680
(100 %)
6 diff
(99.8 %id)
TI_1948156326   CHRM5.a 1051 to 1860 129 to 948   fully sequenced,   820/948
(86 %)
6 diff
(99.4 %id)
TI_1948156497   CHRM5.a 1051 to 1894 126 to 973   fully sequenced,   848/973
(87 %)
9 diff
(99.1 %id)
TI_1948156674   CHRM5.a 1051 to 1896 129 to 976   fully sequenced,   848/976
(86 %)
9 diff
(99.1 %id)
TI_1948156851   CHRM5.a 1051 to 1730 121 to 798   fully sequenced,   678/798
(84 %)
46 diff
(94.3 %id)
TI_1948233070   CHRM5.a 1051 to 2000 122 to 1076   fully sequenced,   955/1076
(88 %)
15 diff
(98.7 %id)
TI_1948233224   CHRM5.a 1051 to 1883 122 to 949   fully sequenced,   828/949
(87 %)
17 diff
(98.3 %id)
TI_1948233373   CHRM5.a 1051 to 1917 123 to 986   fully sequenced,   864/986
(87 %)
10 diff
(99.0 %id)
TI_1948233529   CHRM5.a 1051 to 1906 119 to 964   fully sequenced,   846/964
(87 %)
10 diff
(99.0 %id)
AF026263 lens epithelium CHRM5.a 1057 to 2655 1 to 1599 exact     1599/1599
(100 %)
0 diff
(100 %id)
AF385591   CHRM5.a 1057 to 2632 1 to 1576       1576/1581
(99 %)
1 diff
(100.0 %id)
AF498919 brain CHRM5.a 1057 to 2655 1 to 1599 exact     1599/1599
(100 %)
0 diff
(100 %id)
EL733918 mixed CHRM5.a 1057 to 1693 1 to 637       637/637
(100 %)
0 diff
(100 %id)
EL736827 mixed CHRM5.a 1057 to 1705 1 to 649       649/649
(100 %)
2 diff
(99.7 %id)
CB565878 mixed CHRM5.a 1057 to 1670 1 to 617       617/821
(75 %)
4 diff
(99.6 %id)
CO958959 mixed CHRM5.a 1057 to 1792 1 to 731       731/747
(97 %)
15 diff
(98.0 %id)
TI_1948156852   CHRM5.a 1700 to 2660 1089 to 122   fully sequenced,   968/1089
(88 %)
17 diff
(98.5 %id)
TI_1948156327   CHRM5.a 1830 to 2660 942 to 121   fully sequenced,   822/942
(87 %)
16 diff
(98.4 %id)
TI_1948233225   CHRM5.a 1853 to 2660 946 to 119   fully sequenced,   828/946
(87 %)
14 diff
(98.6 %id)
TI_1948156498   CHRM5.a 1864 to 2660 915 to 123   fully sequenced,   793/915
(86 %)
9 diff
(99.1 %id)
TI_1948156675   CHRM5.a 1866 to 2660 912 to 121   fully sequenced,   792/912
(86 %)
8 diff
(99.2 %id)
TI_1948233530   CHRM5.a 1876 to 2660 881 to 120   fully sequenced,   762/881
(86 %)
8 diff
(99.1 %id)
TI_1948233374   CHRM5.a 1887 to 2660 898 to 118   fully sequenced,   781/898
(86 %)
5 diff
(99.5 %id)
TI_1948233071   CHRM5.a 1970 to 2660 824 to 119   fully sequenced,   706/824
(85 %)
6 diff
(99.3 %id)
CO958962 mixed CHRM5.a 2015 to 2652 645 to 20       626/749
(83 %)
0 diff
(100 %id)
DB310461 subthalamic nucleus CHRM5.a 2076 to 2598 524 to 1       524/524
(100 %)
1 diff
(99.9 %id)
DB517703 testis CHRM5.a 2980 to 3425 1 to 446     Submitted on the opposite strand 446/446
(100 %)
2 diff
(99.6 %id)
BX102692 uterus CHRM5.a 3014 to 3432 1 to 419   tiling clone, AAA   419/419
(100 %)
2 diff
(99.6 %id)
AI088488 uterus CHRM5.a 3047 to 3432 386 to 1       386/386
(100 %)
2 diff
(99.5 %id)
DB024979 testis CHRM5.b 1 to 555 9 to 563   tiling clone, capped   555/555
(100 %)
1 diff
(99.9 %id)
AB084282 brain CHRM5.b 102 to 2433 1 to 2332 exact tiling clone,   2332/2332
(100 %)
7 diff
(99.7 %id)
BI562468 testis CHRM5.b 102 to 910 1 to 810       810/810
(100 %)
14 diff
(98.3 %id)
BC041805 testis CHRM5.b 107 to 2789 1 to 2683 T345I tiling clone, available from MGC, AAA   2683/2683
(100 %)
3 diff
(99.9 %id)
TI_44350861   CHRM5.b 107 to 910 129 to 933       805/933
(86 %)
15 diff
(98.4 %id)
DB336422 testis CHRM5.b 1199 to 1725 527 to 1       527/527
(100 %)
0 diff
(100 %id)
BF313529 brain, neuroblastoma CHRM5.c-u 1 to 796 1 to 786   tiling clone,   786/877
(89 %)
21 diff
(97.7 %id)
DB309477 hippocampus CHRM5.c-u 650 to 1217 568 to 1 H5P K12N N17T T20P S32W ... tiling clone,   568/569
(99 %)
15 diff
(97.4 %id)
DA390790 thalamus CHRM5.d 1 to 578 2 to 580 G18V tiling clone, capped   579/579
(100 %)
2 diff
(99.7 %id)
DA354765 substantia nigra CHRM5.d 476 to 1046 2 to 572   tiling clone, capped   571/571
(100 %)
1 diff
(99.9 %id)
AL548447 placenta, Placenta Cot 25-normalized Gene CHRM5, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI