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Gene CHMTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
233 supporting clones for gene CHM back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB231066 trachea .a 1 to 532 8 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
NM_000390.2   .a 1 to 5438 5 to 5442 exact RefSeq,   5442/5442
(100 %)
0 diff
(100 %id)
DA250081 brain .a 1 to 589 4 to 592   tiling clone, capped   591/591
(100 %)
0 diff
(100 %id)
DA723074   .a 1 to 572 3 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
DA885785   .a 1 to 555 3 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA707608   .a 1 to 561 2 to 562   capped   561/561
(100 %)
3 diff
(99.5 %id)
CD691125 normal nasopharynx .a 2 to 379 19 to 397       379/397
(95 %)
10 diff
(97.5 %id)
DA859435 placenta .a 2 to 548 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DA989734 synovial membrane tissue from rheumatioidarthritis .a 2 to 526 2 to 527   capped   526/526
(100 %)
3 diff
(99.5 %id)
DA934775 Spleen .a 3 to 594 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DB218498 trachea .a 3 to 574 2 to 574   capped   573/573
(100 %)
3 diff
(99.5 %id)
DA099777 cerebellum .a 4 to 586 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA448280 tongue, tumor tissue .a 4 to 552 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DA661249   .a 4 to 559 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
AK291160   .a 5 to 2443 1 to 2439 S89C tiling clone,   2439/2439
(100 %)
2 diff
(100.0 %id)
AK312443 brain .a 5 to 1988 1 to 1984 E316*     1985/1984
(100 %)
1 diff
(100.0 %id)
DA418896 thalamus .a 5 to 580 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
BP234636 coronary artery .a 5 to 591 1 to 587       587/587
(100 %)
2 diff
(99.7 %id)
BP278942   .a 5 to 599 1 to 597       597/597
(100 %)
3 diff
(99.5 %id)
BP315827 mammary gland .a 5 to 586 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA092967 cerebellum .a 6 to 500 2 to 496   capped   495/495
(100 %)
1 diff
(99.8 %id)
DA111668 cerebellum .a 6 to 587 2 to 584   capped   583/583
(100 %)
2 diff
(99.7 %id)
DA234047 brain .a 6 to 588 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA249232 brain .a 6 to 570 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DA319300 hippocampus .a 6 to 569 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA454944 tongue, tumor tissue .a 6 to 219 2 to 215   capped   214/214
(100 %)
1 diff
(99.6 %id)
DA494798 brain .a 6 to 569 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DA628629 Kidney .a 6 to 542 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
DA720781   .a 6 to 572 2 to 569   capped   568/568
(100 %)
3 diff
(99.5 %id)
DA724210   .a 6 to 564 2 to 561   capped   560/561
(99 %)
6 diff
(99.0 %id)
DA740626   .a 6 to 552 2 to 548   capped   547/547
(100 %)
2 diff
(99.7 %id)
DA806230 brain .a 6 to 556 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA806949 brain .a 6 to 571 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA989320 synovial membrane tissue from rheumatioidarthritis .a 6 to 571 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DB205428 trachea .a 6 to 586 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DB216292 trachea .a 6 to 546 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DB218870 trachea .a 6 to 545 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DB225632 trachea .a 6 to 566 2 to 564   capped   563/563
(100 %)
3 diff
(99.5 %id)
DB227870 trachea .a 6 to 543 2 to 540   capped   539/539
(100 %)
1 diff
(99.9 %id)
DB236093 trachea .a 6 to 595 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DA451859 tongue, tumor tissue .a 8 to 596 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DB233267 trachea .a 8 to 500 2 to 495   capped   494/498
(99 %)
3 diff
(99.4 %id)
DB239098 trachea .a 11 to 600 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA725423   .a 13 to 460 2 to 449   capped   448/448
(100 %)
3 diff
(99.4 %id)
DA775216 brain .a 13 to 594 2 to 584   capped   583/583
(100 %)
2 diff
(99.7 %id)
DA888437   .a 13 to 527 2 to 518   capped   517/517
(100 %)
2 diff
(99.7 %id)
TI_149304950   .a 14 to 647 767 to 134       634/1051
(60 %)
0 diff
(100 %id)
DA461546 tongue, tumor tissue .a 15 to 578 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DB233225 trachea .a 15 to 592 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
DA439507 tongue, tumor tissue .a 17 to 579 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA320618 hippocampus .a 18 to 586 2 to 570   capped   569/570
(99 %)
3 diff
(99.5 %id)
DN992615 brain, whole brain .a 21 to 642 8 to 629       622/629
(98 %)
7 diff
(98.9 %id)
DA241235 brain .a 22 to 595 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DA102920 cerebellum .a 25 to 571 2 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
DA228100 brain .a 25 to 578 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA231995 brain .a 25 to 589 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA434204 tongue, tumor tissue .a 25 to 543 2 to 520   capped   519/519
(100 %)
0 diff
(100 %id)
DA722353   .a 25 to 600 2 to 578   capped   577/577
(100 %)
3 diff
(99.5 %id)
DA800681 brain .a 25 to 574 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB241073 trachea .a 25 to 619 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
DA696505   .a 26 to 590 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
DA942777 Spleen .a 26 to 609 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
CN429007 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 27 to 696 1 to 670       670/670
(100 %)
2 diff
(99.8 %id)
CN429005 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 28 to 257 1 to 230       230/230
(100 %)
3 diff
(98.7 %id)
BQ428081 leiomyosarcoma, uterus .a 32 to 919 1 to 887       887/887
(100 %)
14 diff
(98.5 %id)
BM978446 lung, Primary Lung Epithelial Cells .a 34 to 647 640 to 27   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 614/640
(95 %)
0 diff
(100 %id)
CN429006 embryonic stem cells, cell lines H1, H7, andH9 .a 39 to 669 1 to 631       631/631
(100 %)
2 diff
(99.7 %id)
DA193109 amygdala .a 55 to 629 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
AI126362 uterus .a 168 to 684 519 to 3       517/519
(99 %)
2 diff
(99.7 %id)
DA452270 tongue, tumor tissue .a 619 to 1193 2 to 576   capped   575/584
(98 %)
2 diff
(99.7 %id)
DA658150   .a 718 to 1282 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA718450   .a 804 to 1379 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
AW629595 2 pooled high-grade transitional celltumors, genitourinary tract .a 859 to 1218 10 to 369       360/372
(96 %)
11 diff
(97.1 %id)
M83773 retina .a 868 to 2132 191 to 1455       1265/1455
(86 %)
10 diff
(99.4 %id)
DA024951   .a 911 to 1469 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
X57637   .a 961 to 2301 42 to 1390       1356/1390
(97 %)
11 diff
(99.3 %id)
DA502705 brain .a 1010 to 1580 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA503850 brain .a 1012 to 1558 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
BP241478 Liver .a 1220 to 1788 1 to 569       569/569
(100 %)
2 diff
(99.7 %id)
BE543949 cervical carcinoma cell line, cervix .a 1235 to 1917 1 to 681       681/822
(82 %)
21 diff
(97.5 %id)
BP245788 Kidney .a 1319 to 1921 1 to 603       603/603
(100 %)
0 diff
(100 %id)
DA019940   .a 1395 to 1951 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
BG291499 bladder, transitional cell papilloma, cell line .a 1472 to 2180 1 to 706       708/706
(100 %)
9 diff
(98.8 %id)
BE082481 breast .a 1612 to 2097 486 to 1     Submitted on the opposite strand 486/486
(100 %)
3 diff
(99.4 %id)
EH342980   .a 1668 to 1739 1 to 72       72/72
(100 %)
0 diff
(100 %id)
DA189796 amygdala .a 1795 to 2370 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
BU195111 melanotic melanoma, skin .a 1833 to 2683 1 to 872       872/878
(99 %)
38 diff
(95.7 %id)
DA417126 thalamus .a 2069 to 2617 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
BF431508 Kidney .a 2225 to 2554 330 to 1       330/330
(100 %)
0 diff
(100 %id)
BQ081975 Ascites, stomach .a 2237 to 2582 1 to 346       346/350
(98 %)
1 diff
(99.8 %id)
DA190684 amygdala .a 2240 to 2841 2 to 603   capped   602/602
(100 %)
0 diff
(100 %id)
DA292059 hippocampus .a 2338 to 2921 2 to 585   capped   584/584
(100 %)
3 diff
(99.5 %id)
DA393363 thalamus .a 2359 to 2943 2 to 586   tiling clone, capped   585/585
(100 %)
0 diff
(100 %id)
DB103470 thymus .a 2565 to 3122 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
CA390242 eye, RPE/choroid .a 2623 to 3138 1 to 513       513/513
(100 %)
1 diff
(99.9 %id)
DR759580 embryonic stem .a 2809 to 3658 1 to 850   tiling clone,   850/850
(100 %)
0 diff
(100 %id)
DB365104   .a 2932 to 3509 578 to 1       578/579
(99 %)
15 diff
(97.5 %id)
DA139485 alzheimer cortex .a 2967 to 3582 2 to 618   capped   617/617
(100 %)
2 diff
(99.7 %id)
AW089657 ovary, tumor, 5 pooled (see description) .a 3093 to 3200 108 to 1       108/108
(100 %)
0 diff
(100 %id)
BC073987 Lung, large cell carcinoma .a 3202 to 5436 1 to 2236   available from MGC, AAA   2236/2236
(100 %)
2 diff
(100.0 %id)
BM907207 large cell carcinoma, lung .a 3203 to 4065 1 to 878   available from MGC,   878/1000
(87 %)
27 diff
(97.3 %id)
AI274621 Kidney, renal cell tumor .a 3217 to 3507 292 to 3       290/292
(99 %)
0 diff
(100 %id)
AW613181 2 pooled high-grade transitional celltumors, genitourinary tract .a 3217 to 3509 293 to 1       293/293
(100 %)
0 diff
(100 %id)
DA709914   .a 3353 to 3888 2 to 540   capped   539/539
(100 %)
3 diff
(99.5 %id)
BX953038   .a 3444 to 3919 1 to 475       475/475
(100 %)
4 diff
(99.2 %id)
CN413401 embryonic stem cells, cell lines H1, H7, andH9 .a 3476 to 4019 1 to 544       544/544
(100 %)
1 diff
(99.9 %id)
BC065702 Uterus, leiomyosarcoma .a 3494 to 5437 1 to 1944   available from MGC, AAA   1944/1944
(100 %)
2 diff
(99.9 %id)
BU521493 leiomyosarcoma, uterus .a 3495 to 4248 1 to 759       759/890
(85 %)
18 diff
(98.0 %id)
BU521559 leiomyosarcoma, uterus .a 3495 to 4122 1 to 644   available from MGC,   644/738
(87 %)
36 diff
(95.2 %id)
BC105969 Brain, glioblastoma with EGFR amplification .a 3530 to 5437 22 to 1929   tiling clone, AAA   1908/1929
(98 %)
6 diff
(99.7 %id)
BF339103 brain, glioblastoma with EGFR amplification .a 3530 to 4211 22 to 700       679/935
(72 %)
6 diff
(99.4 %id)
AK095883   .a 3531 to 5437 134 to 2040   available from FLJ,   1907/2040
(93 %)
6 diff
(99.8 %id)
DA554362   .a 3531 to 3952 134 to 556   capped   423/555
(76 %)
6 diff
(99.0 %id)
DA361156 subthalamic nucleus .a 3581 to 4142 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
AY255796 testis .a 3586 to 4177 1 to 592       592/592
(100 %)
0 diff
(100 %id)
BM721494 eye, fetal eye .a 3612 to 3992 1 to 381       381/381
(100 %)
0 diff
(100 %id)
BE892014 melanotic melanoma, skin .a 3651 to 4378 1 to 726       726/738
(98 %)
14 diff
(98.2 %id)
T80169 whole brain .a 3656 to 3972 1 to 325       325/325
(100 %)
15 diff
(95.4 %id)
CF137970 lymph .a 3667 to 4251 8 to 592       585/592
(98 %)
6 diff
(99.0 %id)
TI_154167734   .a 3667 to 4341 78 to 757       680/820
(82 %)
10 diff
(98.8 %id)
DA543813   .a 3677 to 4242 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
T80449 whole brain .a 3682 to 4126 1 to 454       454/475
(95 %)
17 diff
(96.5 %id)
AA383146 testis .a 3824 to 4037 1 to 215       215/215
(100 %)
1 diff
(99.6 %id)
CD356708 Blood vessels - aorta, basilar and artery .a 3849 to 4519 1 to 679       679/746
(91 %)
17 diff
(97.8 %id)
CD106837 brain, Pituitary .a 3855 to 4633 1 to 785       785/851
(92 %)
6 diff
(99.3 %id)
BF667109 brain, primitive neuroectoderm .a 3895 to 4592 1 to 695       695/826
(84 %)
23 diff
(97.3 %id)
BF668402 brain, primitive neuroectoderm .a 3895 to 4473 1 to 580       580/584
(99 %)
25 diff
(95.8 %id)
AI909056 breast .a 3896 to 4331 448 to 12       437/448
(97 %)
0 diff
(100 %id)
BF212874 bone marrow, from chronic myelogenous leukemia .a 3896 to 4413 1 to 525       525/527
(99 %)
13 diff
(97.6 %id)
R62525 placenta .a 4002 to 4288 1 to 291       291/291
(100 %)
4 diff
(98.7 %id)
BE161059 head_neck .a 4047 to 4273 1 to 227       227/228
(99 %)
1 diff
(99.6 %id)
AA215387 germinal center B cell .a 4170 to 4605 30 to 464       435/464
(93 %)
6 diff
(98.8 %id)
R24660 placenta .a 4174 to 4458 1 to 295       295/300
(98 %)
21 diff
(93.0 %id)
AA306817 colon .a 4268 to 4654 1 to 391       391/391
(100 %)
4 diff
(99.0 %id)
BM700393 eye, lens .a 4375 to 4763 1 to 389       389/389
(100 %)
0 diff
(100 %id)
AA280756 germinal center B cell .a 4381 to 4828 1 to 447       447/447
(100 %)
2 diff
(99.6 %id)
AA318653 Spleen .a 4398 to 4659 10 to 271       262/271
(96 %)
6 diff
(97.8 %id)
AW964424   .a 4398 to 4809 9 to 420       412/493
(83 %)
26 diff
(94.8 %id)
BI520602 brain, medulla .a 4406 to 5385 1001 to 4       998/1001
(99 %)
0 diff
(100 %id)
TI_43963696   .a 4406 to 5385 1001 to 4       998/1001
(99 %)
0 diff
(100 %id)
BE973563 Prostate .a 4415 to 5017 1 to 592       592/812
(72 %)
18 diff
(97.8 %id)
BQ631852 Pancreas, Purified pancreatic islet .a 4415 to 4953 1 to 539   fully sequenced,   539/539
(100 %)
0 diff
(100 %id)
BI048019 stomach .a 4470 to 4943 486 to 10       477/486
(98 %)
0 diff
(100 %id)
AA636097 Ewing's sarcoma .a 4499 to 4840 1 to 342       342/342
(100 %)
6 diff
(98.3 %id)
AA528458 Ewing's sarcoma .a 4503 to 5048 8 to 550       543/553
(98 %)
14 diff
(97.5 %id)
BM905142 melanotic melanoma, skin .a 4506 to 5246 1 to 745       745/1104
(67 %)
7 diff
(99.4 %id)
TI_149310598   .a 4585 to 5437 931 to 88   AAA   844/939
(89 %)
15 diff
(98.5 %id)
BP306171   .a 4610 to 5190 1 to 581       581/581
(100 %)
6 diff
(99.0 %id)
R82222 placenta .a 4655 to 4965 1 to 311       311/311
(100 %)
2 diff
(99.4 %id)
BU688880 lung .a 4722 to 5437 734 to 19   AAA   716/716
(100 %)
1 diff
(99.9 %id)
BF745396 breast .a 4746 to 5157 1 to 414       414/414
(100 %)
23 diff
(94.5 %id)
TI_154020535   .a 4750 to 5437 783 to 95   AAA   689/690
(99 %)
5 diff
(99.3 %id)
BM992114 Bone, Subchondral Bone .a 4767 to 5437 687 to 19   AAA   669/669
(100 %)
2 diff
(99.8 %id)
CB155362 brain .a 4782 to 5352 1 to 571       571/571
(100 %)
0 diff
(100 %id)
CA438499 lung, Metastatic Chondrosarcoma .a 4796 to 5437 662 to 19   AAA   644/644
(100 %)
2 diff
(99.7 %id)
BE814491 breast_normal .a 4827 to 5235 409 to 2       408/586
(69 %)
0 diff
(100 %id)
BM677132 eye, fetal eye .a 4843 to 5437 613 to 19   AAA   595/595
(100 %)
0 diff
(100 %id)
DB342651 thymus .a 4846 to 5434 590 to 1       590/590
(100 %)
2 diff
(99.7 %id)
BP421047 small intestine .a 4849 to 5215 1 to 368     Submitted on the opposite strand 368/368
(100 %)
2 diff
(99.5 %id)
BU738048 eye, lens .a 4857 to 5437 599 to 19   AAA   581/581
(100 %)
0 diff
(100 %id)
D20028   .a 4869 to 5358 1 to 488     Submitted on the opposite strand 488/496
(98 %)
15 diff
(97.0 %id)
TI_157607079   .a 4878 to 5435 693 to 136   AAA   558/928
(60 %)
55 diff
(94.1 %id)
DB318445   .a 4884 to 5437 556 to 1       556/556
(100 %)
2 diff
(99.7 %id)
AA878377 carcinoid, lung .a 4903 to 5436 534 to 1       534/534
(100 %)
0 diff
(100 %id)
BQ632151 Pancreas, Purified pancreatic islet .a 4923 to 5433 521 to 11   fully sequenced, AAA   511/511
(100 %)
0 diff
(100 %id)
AW264482 brain, three pooled meningiomas .a 4934 to 5434 505 to 5       501/505
(99 %)
0 diff
(100 %id)
R25163 placenta .a 4940 to 5214 281 to 1       281/308
(91 %)
10 diff
(96.8 %id)
BP397419 pancreatic islet .a 4943 to 5438 1 to 496   tiling clone, Submitted on the opposite strand 496/498
(99 %)
1 diff
(99.8 %id)
AI084502 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4946 to 5438 495 to 3       493/495
(99 %)
0 diff
(100 %id)
BF439623 pooled .a 4969 to 5434 474 to 9       466/474
(98 %)
0 diff
(100 %id)
BX119127 whole brain .a 4995 to 5435 457 to 16   AAA   442/444
(99 %)
1 diff
(99.8 %id)
AI086537 senescent fibroblast .a 4996 to 5438 450 to 8       443/451
(98 %)
0 diff
(100 %id)
BF745473 breast .a 5002 to 5284 1 to 284       284/284
(100 %)
14 diff
(95.1 %id)
AI524467 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 5004 to 5434 444 to 16   AAA   429/429
(100 %)
2 diff
(99.6 %id)
AA214516 germinal center B cell .a 5059 to 5437 388 to 1       388/409
(94 %)
11 diff
(97.4 %id)
C16437   .a 5069 to 5437 1 to 368       368/368
(100 %)
2 diff
(99.5 %id)
AI432571 adenocarcinoma, Pancreas .a 5069 to 5434 375 to 10       366/375
(97 %)
0 diff
(100 %id)
R39369 whole brain .a 5086 to 5437 371 to 13   AAA   359/360
(99 %)
16 diff
(95.6 %id)
AI474660 Kidney .a 5097 to 5437 341 to 1       341/341
(100 %)
0 diff
(100 %id)
R39019 whole brain .a 5128 to 5437 323 to 12   AAA   312/312
(100 %)
4 diff
(98.8 %id)
AA995304 2 pooled tumors (clear cell type), Kidney .a 5133 to 5434 307 to 6       302/307
(98 %)
0 diff
(100 %id)
CB963502 Blood vessels - aorta, basilar and artery .a 5155 to 5437 1 to 283   AAA   283/283
(100 %)
3 diff
(99.0 %id)
AA969711 Kidney, kidney tumor .a 5187 to 5437 251 to 1       251/251
(100 %)
0 diff
(100 %id)
FN061199 breast carcinoma .a 5248 to 5359 1 to 114       114/114
(100 %)
2 diff
(98.3 %id)
FN121691 breast carcinoma .a 5275 to 5377 1 to 105       105/105
(100 %)
2 diff
(98.1 %id)
AI910647 ovary, tumor, 5 pooled (see description) .a 5312 to 5437 146 to 21   AAA   126/126
(100 %)
0 diff
(100 %id)
GD149924   .a 5359 to 5438 1 to 79       79/94
(84 %)
2 diff
(97.9 %id)
DA738217   .b 1 to 889 2 to 887   tiling clone, capped   886/894
(99 %)
10 diff
(98.9 %id)
DB370816   .b 2920 to 3479 552 to 1   tiling clone,   552/555
(99 %)
22 diff
(96.1 %id)
AK299323   .c 1 to 1998 3 to 2000 exact tiling clone,   2000/2000
(100 %)
1 diff
(100.0 %id)
DC372484   .c 1 to 539 3 to 541       541/541
(100 %)
1 diff
(99.9 %id)
DA801078 brain .d 1 to 554 3 to 557 W47L A48G S49Q S51* tiling clone, capped   556/556
(100 %)
1 diff
(99.9 %id)
NM_001145414.1   .e 1 to 2830 5 to 2834 exact RefSeq, AAA   2834/2834
(100 %)
0 diff
(100 %id)
DA883834   .e 5 to 572 2 to 570 W47X A48G S49Q S51* tiling clone, capped   569/569
(100 %)
5 diff
(99.2 %id)
TI_1607546643   .e 6 to 588 52 to 634 exact fully sequenced,   583/634
(91 %)
7 diff
(98.9 %id)
BC130494 Brain, cerebellum, PCR rescued clones .e 6 to 586 1 to 581 exact     581/581
(100 %)
0 diff
(100 %id)
BC130496 Brain, cerebellum, PCR rescued clones .e 6 to 586 1 to 581 exact     581/581
(100 %)
0 diff
(100 %id)
BC032237 Brain, fetal, whole pooled .e 20 to 2830 1 to 2812 exact tiling clone, available from MGC, AAA   2812/2812
(100 %)
1 diff
(100.0 %id)
BI915905 brain .e 20 to 751 1 to 735 exact available from MGC,   735/735
(100 %)
6 diff
(99.2 %id)
TI_57244430   .e 20 to 751 33 to 767 exact     735/767
(95 %)
12 diff
(98.5 %id)
AL524494 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .e 31 to 1052 1 to 1016       1016/1035
(98 %)
14 diff
(98.7 %id)
TI_1607546679   .e 112 to 588 547 to 71   fully sequenced,   477/547
(87 %)
0 diff
(100 %id)
BX390161 Neuroblastoma Cot 25-normalized .e 801 to 1698 1 to 889       889/899
(98 %)
13 diff
(98.6 %id)
BF131702 hypernephroma, Kidney .e 1613 to 2144 1 to 528       528/832
(63 %)
6 diff
(99.3 %id)
AL524493 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .e 1758 to 2801 1052 to 11       1042/1052
(99 %)
0 diff
(100 %id)
AI743589 pooled .e 2258 to 2829 573 to 1       573/573
(100 %)
3 diff
(99.5 %id)
AI800748 pooled .e 2433 to 2829 398 to 1       398/398
(100 %)
1 diff
(99.8 %id)
AI350575   .e 2463 to 2837 376 to 1   tiling clone,   376/376
(100 %)
3 diff
(99.3 %id)
AA931465.
matches multiple genes
Kidney .f 1 to 399 399 to 1   tiling clone, also hits gene SERPINF2 399/399
(100 %)
0 diff
(100 %id)
AW372545 breast .f 192 to 775 581 to 1 L41T Q43P E44G I45N C46L ...     581/585
(99 %)
19 diff
(96.8 %id)
AW372549 breast .f 196 to 726 12 to 538       527/538
(97 %)
6 diff
(98.9 %id)
AW372554 breast .f 196 to 413 9 to 224       216/293
(73 %)
4 diff
(98.7 %id)
AW372540 breast .f 198 to 784 588 to 5 S8N F86L N94T L95*     584/588
(99 %)
1 diff
(99.9 %id)
AW372541 breast .f 201 to 786 1 to 585 P56A N91K tiling clone,   585/590
(99 %)
11 diff
(98.2 %id)
AW372548 breast .f 201 to 468 20 to 284       265/284
(93 %)
6 diff
(97.9 %id)
AW372542 breast .f 227 to 745 1 to 518       518/518
(100 %)
10 diff
(98.1 %id)
AW372547 breast .f 244 to 783 537 to 1 T40H L41F F42S Q43R E44K ... tiling clone,   537/537
(100 %)
11 diff
(98.0 %id)
AW372552 breast .f 316 to 742 90 to 510   tiling clone,   421/514
(81 %)
9 diff
(98.3 %id)
BE501743 Kidney .g 1 to 362 362 to 1 exact tiling clone,   362/362
(100 %)
0 diff
(100 %id)
DA716509   .h 1 to 577 2 to 579 E15G T16D T17D L18F A19G ... tiling clone, capped   578/578
(100 %)
3 diff
(99.5 %id)
DA799151 brain .i 1 to 532 2 to 533 exact capped   532/532
(100 %)
1 diff
(99.9 %id)
DA958663 Spleen .i 1 to 554 2 to 555 exact tiling clone, capped   554/554
(100 %)
1 diff
(99.9 %id)
DA191984 amygdala .i 6 to 609 2 to 607 exact tiling clone, capped   606/606
(100 %)
3 diff
(99.6 %id)
BC063522 Adrenal cortex, carcinoma .j 1 to 2218 3 to 2221 exact tiling clone, available from MGC, AAA   2221/2221
(100 %)
4 diff
(99.9 %id)
BF971013 adrenal cortex carcinoma, cell line, adrenal gland .j 1 to 631 3 to 633 exact available from MGC,   633/635
(99 %)
3 diff
(99.6 %id)
CN283795 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .k-u 1 to 679 1 to 679   tiling clone,   679/679
(100 %)
2 diff
(99.8 %id)
CN315259 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .k-u 647 to 1052 27 to 432   tiling clone,   406/436
(93 %)
24 diff
(94.5 %id)
DA403806 thalamus .l 1 to 563 2 to 564 S11L tiling clone, capped   563/563
(100 %)
1 diff
(99.9 %id)
DA504901 brain .l 34 to 613 2 to 581 exact capped   580/580
(100 %)
0 diff
(100 %id)
CR741822 uterus .l 35 to 684 1 to 650 exact tiling clone, AAA   650/650
(100 %)
0 diff
(100 %id)
DA165812 amygdala .l 40 to 612 2 to 574 exact capped   573/573
(100 %)
1 diff
(99.9 %id)
BU662939 blood .m 1 to 675 21 to 701 exact tiling clone,   684/701
(97 %)
8 diff
(98.9 %id)
BX484921   .n-u 1 to 459 1 to 459 exact tiling clone,   459/459
(100 %)
0 diff
(100 %id)
AV709873 adrenal gland Gene CHM, variant not shown         Suspected internal deletion, this clone was ignored    
DA025680   Gene CHM, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA093477 cerebellum Gene CHM, variant not shown       capped      
DA376253 thalamus Gene CHM, variant not shown       capped      
DA380217 thalamus Gene CHM, variant not shown       capped      
CD701187 normal nasopharynx Gene CHM, variant not shown              
BX952081   Gene CHM, variant not shown              
DB317569 brain Gene CHM, variant not shown              
DA528330 brain Gene CHM, variant not shown       capped      
AV689562 hepatocellular carcinoma Gene CHM, variant not shown         Suspected internal deletion, this clone was ignored    
BP418637 small intestine Gene CHM, variant not shown         Submitted on the opposite strand    
BG619507 placenta Gene CHM, variant not shown              
DA651717   Gene CHM, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u, .l, .m, .n-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI