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Gene CHD7TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
320 supporting clones for gene CHD7 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CR984604 T-Lymphocytes .a 1 to 718 1 to 722   tiling clone,   722/726
(99 %)
10 diff
(98.7 %id)
CF593459 Human Placenta, placenta .a 5 to 625 25 to 648       624/821
(76 %)
19 diff
(97.7 %id)
BU186415 large cell carcinoma, lung .a 14 to 860 37 to 885   available from MGC,   849/894
(94 %)
14 diff
(98.5 %id)
BC068000 Lung, large cell carcinoma .a 22 to 2284 1 to 2263   tiling clone, available from MGC, AAA   2263/2263
(100 %)
0 diff
(100 %id)
NM_017780.2   .a 22 to 10463 1 to 10442 exact RefSeq, AAA   10442/10442
(100 %)
0 diff
(100 %id)
BC053890 Skin, melanotic melanoma. .a 42 to 2284 1 to 2243   available from MGC, AAA   2243/2243
(100 %)
0 diff
(100 %id)
BU166072 melanotic melanoma, skin .a 44 to 855 1 to 820   available from MGC,   820/827
(99 %)
16 diff
(98.1 %id)
TI_57247298   .a 45 to 860 24 to 862       839/941
(89 %)
46 diff
(95.2 %id)
CN370811 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 50 to 828 5 to 783       779/783
(99 %)
8 diff
(99.0 %id)
BC110818 Blood, adult leukocytes .a 50 to 2413 1 to 2364   AAA   2364/2364
(100 %)
0 diff
(100 %id)
BI912370 leukocyte .a 50 to 860 1 to 834       834/913
(91 %)
44 diff
(95.2 %id)
CN370812 embryonic stem cells, cell lines H1, H7, andH9 .a 51 to 771 13 to 735       723/735
(98 %)
8 diff
(99.0 %id)
BE255645 eye, retinoblastoma .a 84 to 709 1 to 620   available from MGC,   620/725
(85 %)
11 diff
(98.5 %id)
BE252094 eye, retinoblastoma .a 86 to 586 1 to 493   available from MGC,   493/495
(99 %)
14 diff
(97.2 %id)
AA332519 Embryo, 8 weeks .a 93 to 325 7 to 238       232/255
(90 %)
5 diff
(98.1 %id)
BC014681 Eye, retinoblastoma .a 112 to 2413 1 to 2302   available from MGC, AAA   2302/2302
(100 %)
0 diff
(100 %id)
BE777800 eye, retinoblastoma .a 133 to 937 1 to 801   available from MGC,   801/1069
(74 %)
33 diff
(97.0 %id)
AL530122 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .a 261 to 1077 1 to 817       817/817
(100 %)
7 diff
(99.2 %id)
CR602498 Neuroblastoma Cot 50-normalized .a 262 to 2163 1 to 1902       1902/1902
(100 %)
0 diff
(100 %id)
AA768113 germinal center B cell .a 352 to 595 1 to 244     Submitted on the opposite strand 244/244
(100 %)
0 diff
(100 %id)
BQ325956 colon_ins .a 394 to 729 365 to 35       331/365
(90 %)
0 diff
(100 %id)
BQ898254 brain, neuroblastoma, cell line .a 424 to 1348 25 to 954   available from MGC,   930/965
(96 %)
6 diff
(99.4 %id)
BC080627 Brain, neuroblastoma .a 426 to 2284 1 to 1859   available from MGC, AAA   1859/1859
(100 %)
1 diff
(100.0 %id)
BM010905.
matches multiple genes
brain, Brain, neuroblastoma, neuroblastoma, cell line .a 452 to 1338 1 to 887   available from MGC, also hits gene HNRNPK 887/891
(99 %)
23 diff
(97.5 %id)
TI_59379790   .a 452 to 1338 92 to 978       887/891
(99 %)
23 diff
(97.5 %id)
AA205017   .a 570 to 1022 1 to 453       453/453
(100 %)
2 diff
(99.6 %id)
AA205025   .a 570 to 1021 1 to 455       455/457
(99 %)
7 diff
(98.5 %id)
BI087085 cervix .a 588 to 1406 12 to 824       813/826
(98 %)
20 diff
(97.6 %id)
BF982780 duodenal adenocarcinoma, cell line, small intestine .a 607 to 1341 27 to 756       730/956
(76 %)
30 diff
(96.9 %id)
BF530399 anaplastic oligodendroglioma with 1p/19qloss, brain .a 693 to 1459 1 to 775       775/977
(79 %)
13 diff
(98.7 %id)
BG112361 Bone, osteosarcoma, cell line .a 730 to 1471 1 to 732       732/983
(74 %)
12 diff
(98.8 %id)
TI_57237213   .a 880 to 1543 26 to 689       664/689
(96 %)
6 diff
(99.2 %id)
BI908543 leukocyte .a 885 to 1543 1 to 659       659/659
(100 %)
1 diff
(99.9 %id)
BX391633 Neuroblastoma Cot 50-normalized .a 894 to 1884 987 to 1       987/989
(99 %)
38 diff
(96.2 %id)
BQ950678 sciatic nerve .a 936 to 1854 9 to 935       927/938
(98 %)
34 diff
(96.4 %id)
BX369071 Neuroblastoma Cot 50-normalized .a 972 to 1845 1 to 886       886/888
(99 %)
36 diff
(96.0 %id)
W26216 eye, retina .a 1154 to 1598 36 to 479       444/480
(92 %)
7 diff
(98.6 %id)
W27342 eye, retina .a 1158 to 1708 561 to 8       554/578
(95 %)
0 diff
(100 %id)
AK123158 cerebellum .a 1216 to 2930 1 to 1715   tiling clone, available from FLJ, AAA   1715/1715
(100 %)
4 diff
(99.8 %id)
DA085371 cerebellum .a 1217 to 1787 2 to 572   capped   571/572
(99 %)
2 diff
(99.7 %id)
AA315015 colon .a 1294 to 1689 1 to 396       396/396
(100 %)
0 diff
(100 %id)
AW957958   .a 1295 to 1958 1 to 664       664/664
(100 %)
5 diff
(99.3 %id)
CB163088 Liver .a 1342 to 1890 549 to 1     Submitted on the opposite strand 549/549
(100 %)
0 diff
(100 %id)
FN169959 breast carcinoma .a 1346 to 1465 1 to 120       120/120
(100 %)
0 diff
(100 %id)
BF800770 colon_ins .a 1350 to 1704 45 to 403       359/420
(85 %)
6 diff
(98.6 %id)
BF084043 colon .a 1371 to 1803 1 to 433       433/433
(100 %)
3 diff
(99.4 %id)
BX099114 liver and spleen .a 1498 to 2091 1 to 594       594/599
(99 %)
6 diff
(99.0 %id)
AA007638 liver and spleen .a 1502 to 1998 1 to 500   fully sequenced,   500/500
(100 %)
3 diff
(99.4 %id)
AW392359 stomach .a 1533 to 1652 120 to 3       118/120
(98 %)
0 diff
(100 %id)
AW869697 stomach_normal .a 1625 to 1948 322 to 2       321/336
(95 %)
0 diff
(100 %id)
DA732704   .a 1627 to 2284 2 to 662   capped   661/662
(99 %)
11 diff
(98.4 %id)
BE299677 muscle, rhabdomyosarcoma .a 1640 to 2366 742 to 1       742/1008
(73 %)
29 diff
(97.2 %id)
CD370634 Alveolar Macrophage, lung .a 1657 to 2284 643 to 16   AAA   628/628
(100 %)
2 diff
(99.7 %id)
BG988962 head_neck .a 1671 to 2248 26 to 602       577/602
(95 %)
9 diff
(98.6 %id)
BF854727 prostate_normal .a 1690 to 1921 9 to 241       233/251
(92 %)
4 diff
(98.5 %id)
BU538327 adenocarcinoma, cell line, breast .a 1726 to 2284 1 to 559   AAA   559/559
(100 %)
2 diff
(99.7 %id)
AI870918 anaplastic oligodendroglioma, brain .a 1784 to 2292 509 to 1       509/509
(100 %)
0 diff
(100 %id)
AA558473 germ cell tumor .a 1819 to 2253 435 to 1       435/435
(100 %)
0 diff
(100 %id)
AA259140 germinal center B cell .a 1856 to 2289 433 to 1       433/433
(100 %)
1 diff
(99.8 %id)
AI269114 Kidney .a 1870 to 2284 415 to 1       415/415
(100 %)
0 diff
(100 %id)
TI_154159880   .a 1876 to 2444 661 to 99   AAA Submitted on the opposite strand 563/642
(87 %)
22 diff
(96.6 %id)
AA205336   .a 1886 to 2255 374 to 1       374/374
(100 %)
3 diff
(99.2 %id)
AA205283   .a 1887 to 2283 400 to 1       400/400
(100 %)
3 diff
(99.3 %id)
AA969672 pooled .a 1891 to 2284 394 to 1       394/394
(100 %)
1 diff
(99.8 %id)
CN292204 embryonic stem cells, DMSO-treated H9 cellline .a 1903 to 2271 1 to 369       369/369
(100 %)
0 diff
(100 %id)
AA644224 lung, lung carcinoma .a 1910 to 2255 346 to 1       346/346
(100 %)
0 diff
(100 %id)
AA749174 germinal center B cell .a 1927 to 2295 373 to 6       368/373
(98 %)
1 diff
(99.8 %id)
EC480839 Prostate .a 1933 to 2036 103 to 1       103/103
(100 %)
1 diff
(99.1 %id)
AA007613 liver and spleen .a 1968 to 2284 326 to 1   fully sequenced,   326/326
(100 %)
2 diff
(99.4 %id)
AI761385 colon, colon tumor, RER+ .a 1974 to 2415 442 to 1       442/442
(100 %)
2 diff
(99.6 %id)
BE205970 muscle, rhabdomyosarcoma .a 2004 to 2419 416 to 1       416/416
(100 %)
0 diff
(100 %id)
AA918465 pooled .a 2029 to 2288 260 to 1       260/260
(100 %)
0 diff
(100 %id)
FN091844 breast carcinoma .a 2037 to 2130 1 to 92       92/96
(95 %)
5 diff
(94.8 %id)
AW802865 uterus .a 2039 to 2325 28 to 311       284/312
(91 %)
19 diff
(94.0 %id)
AA366385 Pancreas .a 2064 to 2290 1 to 227       227/227
(100 %)
0 diff
(100 %id)
BI036807 nervous_tumor .a 2069 to 2375 1 to 309       309/309
(100 %)
10 diff
(96.8 %id)
BQ365024 stomach_normal .a 2075 to 2230 19 to 174       156/174
(89 %)
7 diff
(96.0 %id)
AW296136   .a 2079 to 2306 228 to 1       228/228
(100 %)
2 diff
(99.2 %id)
AW503836 lymph .a 2086 to 2444 385 to 27   AAA Submitted on the opposite strand 359/359
(100 %)
0 diff
(100 %id)
AW118535 brain, tumor, 5 pooled (see description) .a 2095 to 2414 322 to 1       322/322
(100 %)
2 diff
(99.4 %id)
AI920951 adenocarcinoma, Pancreas .a 2108 to 2444 337 to 1       337/337
(100 %)
0 diff
(100 %id)
AA953326 Kidney, kidney tumor .a 2129 to 2415 287 to 1       287/287
(100 %)
0 diff
(100 %id)
BM804038 duodenal adenocarcinoma, cell line, small intestine .a 2172 to 2736 1 to 571       571/1123
(50 %)
14 diff
(98.8 %id)
EC560274 Prostate .a 2197 to 2284 89 to 1       89/89
(100 %)
1 diff
(98.9 %id)
AW148832 brain, tumor, 5 pooled (see description) .a 2201 to 2417 217 to 1       217/217
(100 %)
0 diff
(100 %id)
FN168878 breast carcinoma .a 2221 to 2277 60 to 4     Submitted on the opposite strand 57/60
(95 %)
0 diff
(100 %id)
AI554924 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2243 to 2538 296 to 1       296/296
(100 %)
0 diff
(100 %id)
EB362458 eye, lens .a 2331 to 2395 65 to 1       65/65
(100 %)
2 diff
(97.0 %id)
AW750162 breast .a 2402 to 2886 1 to 486       486/486
(100 %)
5 diff
(99.0 %id)
DB298088 cerebellum .a 2425 to 2930 506 to 1       506/507
(99 %)
1 diff
(99.9 %id)
BF821764 kidney_tumor .a 2515 to 2935 427 to 10   tiling clone, Submitted on the opposite strand 418/432
(96 %)
6 diff
(98.7 %id)
DB364299   .a 2650 to 3056 410 to 4       407/410
(99 %)
9 diff
(97.9 %id)
AI760504 Kidney .a 2695 to 2930 236 to 1       236/236
(100 %)
1 diff
(99.6 %id)
AB037837 brain .a 2785 to 8685 1 to 5901   tiling clone, available from KIAA,   5901/5901
(100 %)
0 diff
(100 %id)
CF143317 lymph .a 3109 to 3343 1 to 235       235/235
(100 %)
6 diff
(97.5 %id)
AW882829 ovary .a 3133 to 3399 268 to 1       268/283
(94 %)
5 diff
(98.3 %id)
L44555   .a 3263 to 3656 1 to 393       393/393
(100 %)
7 diff
(98.3 %id)
AL706890 human skeletal muscle .a 3355 to 4067 1 to 712       712/712
(100 %)
2 diff
(99.8 %id)
AW502475 lymph .a 3667 to 4079 1 to 413       413/413
(100 %)
4 diff
(99.1 %id)
TI_154157921   .a 3674 to 4214 84 to 624       541/541
(100 %)
2 diff
(99.7 %id)
CX165119 human embryonic stem cells differentiated toan early endodermal cell type .a 3734 to 4497 1 to 764       764/764
(100 %)
0 diff
(100 %id)
AW501749 lymph .a 3762 to 4152 1 to 391       391/391
(100 %)
6 diff
(98.5 %id)
AW502428 lymph .a 3762 to 4264 1 to 503       503/503
(100 %)
11 diff
(97.9 %id)
TI_154156857   .a 3769 to 4246 81 to 559       479/486
(98 %)
8 diff
(98.4 %id)
TI_154157838   .a 3769 to 4434 80 to 740       661/663
(99 %)
26 diff
(96.1 %id)
TI_154174715   .a 4015 to 4673 79 to 750       672/683
(98 %)
17 diff
(97.6 %id)
TI_154173916   .a 4016 to 4562 94 to 640       547/1189
(46 %)
25 diff
(97.9 %id)
CF142785 lymph .a 4019 to 4446 11 to 438       428/443
(96 %)
13 diff
(97.1 %id)
CF143370 lymph .a 4019 to 4581 11 to 573       563/573
(98 %)
7 diff
(98.8 %id)
DA851887 placenta .a 4150 to 4711 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
CR997972 T-Lymphocytes .a 4198 to 4957 1 to 761       761/761
(100 %)
2 diff
(99.8 %id)
CF142319 lymph .a 4237 to 4827 1 to 591       591/591
(100 %)
6 diff
(99.0 %id)
TI_154173299   .a 4244 to 5030 92 to 888       797/1260
(63 %)
28 diff
(97.8 %id)
AL706276 human skeletal muscle .a 4522 to 5274 1 to 753       753/753
(100 %)
1 diff
(99.9 %id)
CN341020 embryonic stem cells, cell lines H1, H7, andH9 .a 4696 to 5350 1 to 655       655/661
(99 %)
3 diff
(99.6 %id)
BE080173 breast .a 4749 to 5220 1 to 472       472/472
(100 %)
3 diff
(99.4 %id)
CN341019 embryonic stem cells, cell lines H1, H7, andH9 .a 4893 to 5139 1 to 247       247/247
(100 %)
0 diff
(100 %id)
BG391216 embryonal carcinoma, cell line, testis .a 5158 to 5709 1 to 555       555/555
(100 %)
7 diff
(98.8 %id)
BX642936   .a 5299 to 5781 1 to 483       483/483
(100 %)
6 diff
(98.8 %id)
BX646126   .a 5351 to 5974 1 to 624       624/624
(100 %)
1 diff
(99.9 %id)
AK295751 hippocampus .a 5412 to 9609 1 to 4198       4198/4198
(100 %)
2 diff
(100.0 %id)
DC334424 hippocampus .a 5412 to 6059 1 to 649       649/649
(100 %)
3 diff
(99.6 %id)
DA216623 brain .a 5451 to 5988 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
CN341017 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 5712 to 6026 1 to 314       314/314
(100 %)
2 diff
(99.4 %id)
AW500148 lymph .a 5758 to 6188 7 to 437       431/437
(98 %)
9 diff
(98.0 %id)
TI_154154313   .a 5758 to 6335 79 to 656       578/664
(87 %)
16 diff
(97.6 %id)
AW505272 lymph .a 5961 to 6231 1 to 271       271/271
(100 %)
12 diff
(95.6 %id)
CF138098 lymph .a 5961 to 6463 1 to 503       503/503
(100 %)
12 diff
(97.7 %id)
CF138620 lymph .a 5961 to 6191 1 to 231       231/231
(100 %)
4 diff
(98.3 %id)
TI_154167880   .a 5967 to 6658 91 to 783       693/862
(80 %)
21 diff
(97.6 %id)
TI_154168637   .a 5967 to 6458 79 to 570       492/493
(99 %)
18 diff
(96.4 %id)
BM909227 astrocytoma grade IV, cell line, brain .a 6087 to 7056 11 to 988       978/1078
(90 %)
36 diff
(96.7 %id)
AW500424 lymph .a 6090 to 6627 1 to 538       538/538
(100 %)
6 diff
(98.9 %id)
TI_154154584   .a 6097 to 6756 80 to 739       660/661
(99 %)
4 diff
(99.4 %id)
BQ439110 embryonal carcinoma, cell line, testis .a 6106 to 6864 1 to 766       766/827
(92 %)
18 diff
(97.9 %id)
TI_154149444   .a 6157 to 6762 78 to 684       607/665
(91 %)
34 diff
(94.9 %id)
TI_154166993   .a 6157 to 6600 81 to 524   AAA   444/468
(94 %)
13 diff
(97.3 %id)
BU428592 lymph .a 6158 to 6506 9 to 357       349/357
(97 %)
6 diff
(98.4 %id)
BU430034 lymph .a 6301 to 6754 1 to 454       454/454
(100 %)
10 diff
(97.8 %id)
TI_154151186   .a 6308 to 6802 87 to 581       495/495
(100 %)
12 diff
(97.6 %id)
BX641423   .a 6343 to 6884 1 to 542       542/542
(100 %)
0 diff
(100 %id)
AW501651 lymph .a 6486 to 6790 8 to 312       305/312
(97 %)
10 diff
(96.8 %id)
AW501621 lymph .a 6486 to 6943 8 to 465       458/465
(98 %)
6 diff
(98.8 %id)
CF143819 lymph .a 6486 to 6885 8 to 407       400/407
(98 %)
6 diff
(98.6 %id)
CF121582 lymph .a 6486 to 7153 8 to 673       666/673
(98 %)
8 diff
(98.9 %id)
CF144072 lymph .a 6486 to 7000 8 to 522       515/522
(98 %)
8 diff
(98.5 %id)
TI_154156644   .a 6486 to 7057 80 to 651       572/580
(98 %)
17 diff
(97.1 %id)
TI_154175396   .a 6486 to 6903 80 to 497       418/420
(99 %)
1 diff
(99.8 %id)
TI_154175926   .a 6486 to 7060 89 to 665       577/843
(68 %)
10 diff
(98.9 %id)
CF143446 lymph .a 6493 to 6977 7 to 491       485/493
(98 %)
9 diff
(98.2 %id)
TI_154174819   .a 6493 to 7112 88 to 708       621/621
(100 %)
16 diff
(97.5 %id)
AW501213 lymph .a 6505 to 6911 1 to 407       407/407
(100 %)
4 diff
(99.1 %id)
BU193102 eye, retinoblastoma .a 6511 to 7409 1 to 899       899/901
(99 %)
17 diff
(98.2 %id)
TI_154155832   .a 6512 to 6944 80 to 512       433/433
(100 %)
1 diff
(99.8 %id)
BI916006 brain .a 6671 to 7435 1 to 769       769/806
(95 %)
18 diff
(97.8 %id)
TI_57244304   .a 6672 to 7435 31 to 798       768/835
(91 %)
13 diff
(98.5 %id)
TI_154157901   .a 6785 to 7272 85 to 572       488/542
(90 %)
14 diff
(97.5 %id)
AL121526 melanoma (MeWo cell line) .a 7011 to 7549 1 to 540       540/540
(100 %)
10 diff
(98.2 %id)
BF904753 marrow .a 7214 to 7426 213 to 1     Submitted on the opposite strand 213/214
(99 %)
1 diff
(99.6 %id)
BU846100 ovary, teratocarcinoma, cell line .a 7327 to 8227 1 to 902       902/902
(100 %)
4 diff
(99.6 %id)
BU930932 ovary, teratocarcinoma, cell line .a 7327 to 8256 1 to 934       934/936
(99 %)
13 diff
(98.7 %id)
AK000364   .a 7409 to 10463 1 to 3055   tiling clone, available from FLJ, AAA   3055/3055
(100 %)
1 diff
(100.0 %id)
N29076 melanocyte .a 7453 to 7913 1 to 462       462/462
(100 %)
1 diff
(99.8 %id)
BG766634 melanotic melanoma, high MDR (cell line), skin .a 7845 to 8463 1 to 625       625/770
(81 %)
19 diff
(97.6 %id)
TI_154137059   .a 7892 to 8693 838 to 46       793/975
(81 %)
35 diff
(96.5 %id)
AW976159   .a 7982 to 8693 718 to 7     Submitted on the opposite strand 712/720
(98 %)
7 diff
(99.1 %id)
AL713438 human skeletal muscle .a 8037 to 8309 1 to 273       273/273
(100 %)
0 diff
(100 %id)
CN341021 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 8087 to 8685 1 to 599       599/599
(100 %)
0 diff
(100 %id)
AW340145 pooled .a 8151 to 8675 525 to 1       525/527
(99 %)
1 diff
(99.9 %id)
AI935428 Kidney .a 8152 to 8660 509 to 1       509/509
(100 %)
0 diff
(100 %id)
BE717589 head_neck .a 8162 to 8398 241 to 6       236/276
(85 %)
9 diff
(96.8 %id)
BE818371 breast_normal .a 8167 to 8473 1 to 307       307/311
(98 %)
8 diff
(97.5 %id)
AW449676   .a 8172 to 8692 521 to 1       521/521
(100 %)
0 diff
(100 %id)
BE818376 breast_normal .a 8177 to 8473 1 to 297       297/301
(98 %)
8 diff
(97.4 %id)
AI241872 brain, tumor, 5 pooled (see description) .a 8188 to 8666 479 to 1       479/479
(100 %)
2 diff
(99.6 %id)
AI819682 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 8188 to 8675 488 to 1       488/488
(100 %)
0 diff
(100 %id)
AW340155 pooled .a 8188 to 8659 472 to 1       472/472
(100 %)
28 diff
(94.1 %id)
N20175 melanocyte .a 8190 to 8660 473 to 1       473/473
(100 %)
14 diff
(97.1 %id)
AA814589 germinal center B cell .a 8195 to 8648 456 to 3       454/456
(99 %)
0 diff
(100 %id)
AI220245 pooled .a 8206 to 8660 455 to 1       455/455
(100 %)
2 diff
(99.6 %id)
AA826046 germinal center B cell .a 8250 to 8652 403 to 1       403/403
(100 %)
0 diff
(100 %id)
AW452903   .a 8273 to 8692 420 to 1       420/420
(100 %)
2 diff
(99.6 %id)
BC051264 Placenta, choriocarcinoma .a 8282 to 10455 1 to 2174   tiling clone, available from MGC, AAA   2174/2174
(100 %)
0 diff
(100 %id)
BE302462 melanotic melanoma, skin .a 8283 to 8808 1 to 526       526/526
(100 %)
0 diff
(100 %id)
BE409534 choriocarcinoma, placenta .a 8297 to 8889 1 to 595   available from MGC,   595/595
(100 %)
6 diff
(99.0 %id)
BF025844 melanotic melanoma, skin .a 8303 to 9028 1 to 710       710/966
(73 %)
26 diff
(97.4 %id)
FN083459 breast carcinoma .a 8404 to 8487 1 to 84       84/84
(100 %)
2 diff
(97.7 %id)
CN341018 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 8449 to 8618 1 to 170       170/170
(100 %)
0 diff
(100 %id)
Z24918 leg muscle, skeletal muscle .a 8465 to 8751 1 to 291       291/339
(85 %)
14 diff
(95.9 %id)
BE298153 muscle, rhabdomyosarcoma .a 8465 to 9116 1 to 653       653/654
(99 %)
3 diff
(99.6 %id)
AA747709 germinal center B cell .a 8488 to 8652 165 to 1       165/165
(100 %)
0 diff
(100 %id)
CB116136 Liver .a 8528 to 8692 1 to 165       165/165
(100 %)
0 diff
(100 %id)
BE207383 melanotic melanoma, skin .a 10039 to 10456 421 to 4       418/421
(99 %)
0 diff
(100 %id)
GU060498   .b 1 to 3456 1 to 3454 M102T V345A T430A K819E tiling clone,   3454/3454
(100 %)
10 diff
(99.8 %id)
BG392234 embryonal carcinoma, cell line, testis .b 2094 to 2663 1 to 571       571/617
(92 %)
5 diff
(99.2 %id)
AW027392 thymus, pooled .b 2116 to 2660 1 to 545     Submitted on the opposite strand 545/545
(100 %)
4 diff
(99.3 %id)
BU185448 ductal carcinoma, cell line, Pancreas .b 2116 to 2917 17 to 833       817/950
(86 %)
6 diff
(99.4 %id)
BM465764 eye, retinoblastoma .b 2120 to 2784 665 to 1     Submitted on the opposite strand 665/665
(100 %)
2 diff
(99.7 %id)
AW137220   .b 2125 to 2621 1 to 497     Submitted on the opposite strand 497/497
(100 %)
7 diff
(98.6 %id)
H19982 brain .b 2155 to 2514 1 to 368     Submitted on the opposite strand 368/378
(97 %)
6 diff
(98.5 %id)
AI830125 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .b 2157 to 2659 1 to 503     Submitted on the opposite strand 503/503
(100 %)
1 diff
(99.9 %id)
AW149821 brain, medulloblastoma .b 2157 to 2658 1 to 503     Submitted on the opposite strand 503/503
(100 %)
2 diff
(99.7 %id)
BF434189 fibrotheoma, ovary .b 2157 to 2663 1 to 507     Submitted on the opposite strand 507/507
(100 %)
0 diff
(100 %id)
BF746707 breast .b 2295 to 2572 276 to 1     Submitted on the opposite strand 276/295
(93 %)
6 diff
(98.0 %id)
AA307523 colon .b 2381 to 2868 1 to 489   tiling clone,   489/489
(100 %)
1 diff
(99.8 %id)
AW954673   .b 2382 to 2766 1 to 386       386/386
(100 %)
1 diff
(99.8 %id)
W96424 eye, retina .b 2393 to 2503 1 to 111     Submitted on the opposite strand 111/115
(96 %)
1 diff
(99.2 %id)
FN134822 breast carcinoma .b 2424 to 2523 100 to 1     Submitted on the opposite strand 100/100
(100 %)
0 diff
(100 %id)
Z28643 leg muscle, skeletal muscle .b 2446 to 2712 267 to 1       267/267
(100 %)
1 diff
(99.7 %id)
BE934692 head_neck .b 2456 to 2754 1 to 298       298/298
(100 %)
6 diff
(98.0 %id)
BM713316 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2479 to 3030 1 to 552   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 552/554
(99 %)
1 diff
(99.9 %id)
AA987293 carcinoid, lung .b 2496 to 3031 536 to 1       536/536
(100 %)
1 diff
(99.9 %id)
BE465081 carcinoid, lung .b 2566 to 3031 466 to 1       466/466
(100 %)
2 diff
(99.6 %id)
BE930938 placenta_normal .b 2567 to 3032 484 to 20       465/484
(96 %)
0 diff
(100 %id)
BM810868 amelanotic melanoma, cell line, skin .b 2598 to 3538 1 to 953   tiling clone, AAA   953/1023
(93 %)
25 diff
(97.6 %id)
AA057192 uterus .b 2616 to 3032 418 to 1       418/418
(100 %)
3 diff
(99.3 %id)
AA010016 liver and spleen .b 2710 to 3046 1 to 342       342/347
(98 %)
13 diff
(96.3 %id)
BE694224 breast .b 2742 to 2929 1 to 189       189/189
(100 %)
5 diff
(97.4 %id)
CK904450 Islets of Langerhans, Pancreas .b 2862 to 3312 1 to 451       451/451
(100 %)
0 diff
(100 %id)
BM023474 Islets of Langerhans, Pancreas .b 2880 to 3326 1 to 447   tiling clone,   447/447
(100 %)
1 diff
(99.8 %id)
TI_154145851   .b 3035 to 3852 882 to 78     Submitted on the opposite strand 805/820
(98 %)
61 diff
(92.6 %id)
TI_154163580   .b 3090 to 3888 892 to 98     Submitted on the opposite strand 795/1197
(66 %)
45 diff
(96.3 %id)
H30341 eye, retina .b 3122 to 3543 13 to 445       433/508
(85 %)
13 diff
(97.5 %id)
CX163976 human embryonic stem cells differentiated toan early endodermal cell type .b 3132 to 3888 775 to 19     Submitted on the opposite strand 757/775
(97 %)
5 diff
(99.4 %id)
BM718916 eye, fetal eye .b 3139 to 3856 1 to 718       718/718
(100 %)
3 diff
(99.6 %id)
TI_154039157   .b 3154 to 3962 928 to 124   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 805/951
(84 %)
63 diff
(93.4 %id)
BF978370 melanotic melanoma, high MDR, skin .b 3157 to 3768 1 to 639       639/734
(87 %)
69 diff
(90.6 %id)
BU689978 Human Lung Epithelial cells, lung .b 3168 to 3874 723 to 17   AAA   707/707
(100 %)
1 diff
(99.9 %id)
BU617003 Cell Line, Chondrosarcoma .b 3175 to 3910 755 to 19   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 737/749
(98 %)
6 diff
(99.2 %id)
BU675017 lung, Primary Lung Epithelial Cells .b 3177 to 3874 1 to 698     Submitted on the opposite strand 698/698
(100 %)
4 diff
(99.5 %id)
BM680819 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 3177 to 3744 1 to 568     Submitted on the opposite strand 568/568
(100 %)
4 diff
(99.3 %id)
CB957040 Pooled-Glandular .b 3182 to 3592 49 to 460       412/799
(51 %)
12 diff
(98.5 %id)
TI_149276102   .b 3182 to 3874 756 to 67   AAA   690/948
(72 %)
33 diff
(96.6 %id)
TI_159696546   .b 3182 to 3910 821 to 95   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 727/992
(73 %)
4 diff
(99.6 %id)
CB243366 Human Lung Epithelial cells, lung .b 3182 to 3878 715 to 19   AAA   697/697
(100 %)
2 diff
(99.8 %id)
CB243621 Human Lung Epithelial cells, lung .b 3182 to 3886 723 to 19   AAA   705/717
(98 %)
2 diff
(99.8 %id)
CN480557 Cell Line, Chondrosarcoma .b 3183 to 3910 744 to 19   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 726/726
(100 %)
4 diff
(99.5 %id)
BU626714 Alveolar Macrophage, lung .b 3183 to 3878 710 to 19   AAA   692/695
(99 %)
6 diff
(99.2 %id)
AA515071 colon .b 3193 to 3587 1 to 396     Submitted on the opposite strand 396/396
(100 %)
3 diff
(99.3 %id)
AA527326 colon .b 3193 to 3704 1 to 512     Submitted on the opposite strand 512/512
(100 %)
8 diff
(98.5 %id)
AW972013   .b 3194 to 3603 1 to 412       412/418
(98 %)
17 diff
(96.0 %id)
CN427260 embryonic stem cells, cell lines H1, H7, andH9 .b 3203 to 3888 698 to 14     Submitted on the opposite strand 685/698
(98 %)
6 diff
(99.2 %id)
CX166797 human embryonic stem cells differentiated toan early endodermal cell type .b 3208 to 3963 777 to 22   tiling clone, Submitted on the opposite strand 756/777
(97 %)
0 diff
(100 %id)
CB242305 Human Lung Epithelial cells, lung .b 3212 to 3874 676 to 17   AAA   660/666
(99 %)
9 diff
(98.7 %id)
TI_154152750   .b 3235 to 3896 763 to 103     Submitted on the opposite strand 661/690
(95 %)
0 diff
(100 %id)
BM023191 Islets of Langerhans, Pancreas .b 3261 to 3836 576 to 1       576/576
(100 %)
0 diff
(100 %id)
DR760631 embryonic stem .b 3262 to 3963 727 to 26     Submitted on the opposite strand 702/727
(96 %)
0 diff
(100 %id)
BQ181366 Knee, Osteoarthritic Cartilage .b 3295 to 3878 602 to 19   AAA   584/584
(100 %)
1 diff
(99.9 %id)
CV809508 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 3317 to 3878 589 to 26     Submitted on the opposite strand 564/589
(95 %)
0 diff
(100 %id)
AW513036 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 3348 to 3879 538 to 7       532/538
(98 %)
0 diff
(100 %id)
AA514234 colon .b 3365 to 3878 526 to 13   AAA   514/514
(100 %)
0 diff
(100 %id)
AI042506 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3378 to 3872 495 to 1       495/495
(100 %)
2 diff
(99.6 %id)
CF135325 lymph .b 3389 to 3888 533 to 34     Submitted on the opposite strand 500/533
(93 %)
6 diff
(98.9 %id)
AI082564 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3397 to 3874 477 to 1       477/477
(100 %)
3 diff
(99.4 %id)
CK904449 Islets of Langerhans, Pancreas .b 3407 to 3835 429 to 1       429/429
(100 %)
1 diff
(99.8 %id)
CN427259 embryonic stem cells, DMSO-treated H9 cellline .b 3422 to 3868 1 to 447       447/447
(100 %)
5 diff
(98.9 %id)
BU431000 lymph .b 3442 to 3896 484 to 30     Submitted on the opposite strand 455/484
(94 %)
0 diff
(100 %id)
TI_154147099   .b 3442 to 3852 495 to 85     Submitted on the opposite strand 411/412
(99 %)
1 diff
(99.8 %id)
BU676998 lung, Primary Lung Epithelial Cells .b 3449 to 3874 444 to 19   AAA   426/426
(100 %)
3 diff
(99.3 %id)
AW592017 pooled .b 3461 to 3877 417 to 1       417/418
(99 %)
1 diff
(99.8 %id)
AW407521 lymph .b 3471 to 3852 389 to 8     Submitted on the opposite strand 382/389
(98 %)
0 diff
(100 %id)
AA595583 colon, tumor .b 3484 to 3878 414 to 20   AAA   395/395
(100 %)
2 diff
(99.5 %id)
AI080114 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3491 to 3911 421 to 1       421/421
(100 %)
0 diff
(100 %id)
AA699914 liver and spleen .b 3513 to 3878 365 to 1       365/371
(98 %)
0 diff
(100 %id)
AI702884 Kidney .b 3522 to 3962 463 to 23   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 441/441
(100 %)
0 diff
(100 %id)
AA664812 alveolar rhabdomyosarcoma .b 3526 to 3883 360 to 2       359/367
(97 %)
0 diff
(100 %id)
FN069203 breast carcinoma .b 3529 to 3595 67 to 1     Submitted on the opposite strand 67/68
(98 %)
2 diff
(97.1 %id)
W96528 eye, retina .b 3594 to 3974 384 to 2   tiling clone, Submitted on the opposite strand 383/394
(97 %)
0 diff
(100 %id)
BM739731 Ascites, stomach .b 3609 to 3878 14 to 282   AAA   269/282
(95 %)
6 diff
(97.9 %id)
AA810167 germinal center B cell .b 3612 to 3878 301 to 35   AAA   267/267
(100 %)
1 diff
(99.7 %id)
AA916894 breast .b 3682 to 3874 214 to 22   AAA   193/193
(100 %)
1 diff
(99.5 %id)
AI565193 pooled .b 3691 to 3878 188 to 1       188/188
(100 %)
0 diff
(100 %id)
AA629693 lung, lung carcinoma .b 3703 to 3792 90 to 1       90/90
(100 %)
0 diff
(100 %id)
EH338283   .b 3887 to 3963 1 to 77       77/81
(95 %)
1 diff
(98.8 %id)
DA100104 cerebellum .c 1 to 526 2 to 527   tiling clone, capped   526/526
(100 %)
1 diff
(99.9 %id)
TI_154180745   .c 478 to 1318 76 to 910   tiling clone,   835/835
(100 %)
11 diff
(98.7 %id)
DA226178 brain .c 911 to 1467 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB201579 trachea .c 975 to 1562 2 to 589   tiling clone, capped   588/588
(100 %)
0 diff
(100 %id)
BU430756 lymph .c 1015 to 1445 1 to 431       431/431
(100 %)
7 diff
(98.4 %id)
TI_154152253   .c 1021 to 1566 80 to 625       546/546
(100 %)
12 diff
(97.9 %id)
AL589284 human spinal cord .c 1086 to 1644 1 to 559       559/559
(100 %)
6 diff
(99.0 %id)
CX871318 embryonic stem .c 1193 to 1960 1 to 768   tiling clone,   768/768
(100 %)
0 diff
(100 %id)
AL698233 human skeletal muscle .c 1796 to 2353 1 to 559   tiling clone,   559/564
(99 %)
3 diff
(99.5 %id)
BE302665 melanotic melanoma, skin .d 1 to 500 1 to 500   tiling clone,   500/500
(100 %)
6 diff
(98.8 %id)
BE302517 melanotic melanoma, skin .d 43 to 425 1 to 383       383/383
(100 %)
3 diff
(99.3 %id)
AI436397 B-cell, chronic lymphotic leukemia .d 168 to 656 1 to 489     Submitted on the opposite strand 489/489
(100 %)
0 diff
(100 %id)
BF002265 colon, colon tumor, RER+ .d 168 to 637 1 to 470     Submitted on the opposite strand 470/470
(100 %)
1 diff
(99.8 %id)
AW293641   .d 178 to 461 26 to 309     Submitted on the opposite strand 284/309
(91 %)
8 diff
(97.5 %id)
CN294005 embryonic stem cells, DMSO-treated H9 cellline .d 180 to 809 1 to 630   tiling clone,   630/630
(100 %)
0 diff
(100 %id)
BE207422 melanotic melanoma, skin .d 1743 to 2195 453 to 1   tiling clone,   453/453
(100 %)
0 diff
(100 %id)
BE207498 melanotic melanoma, skin .d 1995 to 2193 199 to 1       199/200
(99 %)
3 diff
(98.5 %id)
CX867243 embryonic stem .e 1 to 788 1 to 788   tiling clone,   788/788
(100 %)
0 diff
(100 %id)
AI475906 B-cell, chronic lymphotic leukemia .e 676 to 1332 656 to 1   tiling clone,   656/656
(100 %)
2 diff
(99.7 %id)
AI475901 B-cell, chronic lymphotic leukemia .e 700 to 1322 620 to 1   tiling clone,   620/624
(99 %)
19 diff
(97.0 %id)
AK000368   .f 1 to 2220 1 to 2218 D63G tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (34/35 A in genome downstream of last aligned base) 2218/2218
(100 %)
3 diff
(99.9 %id)
AK225354 Liver .f 1 to 2220 1 to 2220 D63G tiling clone, AAA Possibly primed on the genome, locally A rich (34/35 A in genome downstream of last aligned base) 2220/2220
(100 %)
1 diff
(100.0 %id)
AA205093   .g 1 to 111 1 to 110   tiling clone,   110/110
(100 %)
3 diff
(97.3 %id)
AI004773 pooled .g 352 to 785 434 to 1   tiling clone,   434/434
(100 %)
1 diff
(99.8 %id)
AW105085 pooled .g 359 to 785 433 to 1   tiling clone,   433/433
(100 %)
9 diff
(98.0 %id)
AA205148   .g 397 to 781 386 to 1       386/386
(100 %)
1 diff
(99.8 %id)
BG949761 breast_normal .h 1 to 507 511 to 6 exact tiling clone,   506/511
(99 %)
0 diff
(100 %id)
AL833190 lymph node .h 33 to 4254 2 to 4223   tiling clone, available from DKFZ,   4222/4223
(99 %)
0 diff
(100 %id)
BM264374 Pancreas, Purified pancreatic islet .h 634 to 1198 1 to 565       565/565
(100 %)
1 diff
(99.9 %id)
CK824779 Pancreas, Purified pancreatic islet .h 647 to 1230 1 to 584     Submitted on the opposite strand 584/584
(100 %)
1 diff
(99.9 %id)
DA676725   .h 3183 to 3753 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
BE152430 head_neck .h 3598 to 3959 361 to 1     Submitted on the opposite strand 361/371
(97 %)
6 diff
(98.4 %id)
CV341505 head_neck .h 3640 to 4178 546 to 6     Submitted on the opposite strand 541/551
(98 %)
22 diff
(96.1 %id)
AW862206 colon .h 3702 to 4017 1 to 314       314/326
(96 %)
9 diff
(97.3 %id)
DB322431   .h 5490 to 6019 530 to 1   tiling clone,   530/530
(100 %)
0 diff
(100 %id)
BI039198 nervous_tumor .i 1 to 411 1 to 411   tiling clone,   411/411
(100 %)
0 diff
(100 %id)
W28991 eye, retina .i 407 to 960 29 to 579   tiling clone,   551/884
(62 %)
14 diff
(98.5 %id)
FN145347 breast carcinoma .i 590 to 701 114 to 1     Submitted on the opposite strand 114/114
(100 %)
2 diff
(98.3 %id)
BF725878 eye, Iris .i 606 to 1121 1 to 516   tiling clone, Possibly primed on the genome, locally A rich (34/35 A in genome downstream of last aligned base) 516/516
(100 %)
0 diff
(100 %id)
BF725877 eye, Iris .i 1508 to 1914 442 to 36   tiling clone, AAA Possibly primed on the genome, locally A rich (34/35 A in genome downstream of last aligned base) 407/407
(100 %)
0 diff
(100 %id)
R37551 placenta .j 1 to 291 1 to 297   tiling clone,   297/301
(98 %)
18 diff
(94.1 %id)
CK824780 Pancreas, Purified pancreatic islet .j 207 to 777 571 to 1   tiling clone, Submitted on the opposite strand 571/571
(100 %)
0 diff
(100 %id)
BM264071 Pancreas, Purified pancreatic islet .j 242 to 822 581 to 1 exact tiling clone,   581/581
(100 %)
0 diff
(100 %id)
R36710 placenta .j 430 to 790 378 to 1       378/378
(100 %)
24 diff
(93.7 %id)
BF308679 muscle, rhabdomyosarcoma .k 1 to 806 1 to 803 V44G H45F H46V R47P G48E ... tiling clone,   803/803
(100 %)
57 diff
(93.0 %id)
BF064056 colon, colon tumor, RER+ .k 28 to 297 270 to 1   tiling clone,   270/270
(100 %)
0 diff
(100 %id)
CB113882 Liver .l 1 to 566 1 to 566 exact tiling clone,   566/566
(100 %)
1 diff
(99.9 %id)
BM703416 eye, human retina .m-u 1 to 437 1 to 437   tiling clone, AAA Possibly primed on the genome, locally A rich (18/22 A in genome downstream of last aligned base) 437/439
(99 %)
1 diff
(99.8 %id)
AW938106 denis_drash .m-u 241 to 478 12 to 249 S20I tiling clone,   238/249
(95 %)
6 diff
(97.6 %id)
G36896   .n-u 1 to 405 1 to 411 M53I V54G G55P Q56A A57K ... tiling clone,   411/411
(100 %)
12 diff
(97.1 %id)
BX488437   Gene CHD7, variant not shown              
BX488438   Gene CHD7, variant not shown              
AL563652 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized Gene CHD7, variant not shown         This clone was ignored    
BX488447   Gene CHD7, variant not shown              
BX488445   Gene CHD7, variant not shown              
CV405606 head_neck Gene CHD7, variant not shown              
BC033116 Eye, retinoblastoma Gene CHD7, variant not shown       available from MGC, AAA Suspected internal deletion, this clone was ignored    
BC041018 Eye, retinoblastoma Gene CHD7, variant not shown       available from MGC, AAA Suspected internal deletion, this clone was ignored    
AA548727 germ cell tumor Gene CHD7, variant not shown              
AA831292 germinal center B cell Gene CHD7, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m-u, .n-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI