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Gene CHCHD4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
97 supporting clones for gene CHCHD4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_144636.2   .a 1 to 1603 1 to 1603 exact RefSeq, AAA   1603/1603
(100 %)
0 diff
(100 %id)
DB501565 hypothalamus .a 2 to 321 1 to 324   tiling clone,   324/327
(99 %)
10 diff
(97.0 %id)
BP382771 adipose tissue .a 48 to 639 1 to 593       593/593
(100 %)
8 diff
(98.7 %id)
AK056271   .a 50 to 1598 1 to 1549 exact tiling clone, available from FLJ,   1549/1549
(100 %)
0 diff
(100 %id)
DA703259   .a 51 to 478 2 to 429   capped   428/428
(100 %)
0 diff
(100 %id)
CR596652 placenta .a 124 to 1590 1 to 1467 exact     1467/1467
(100 %)
0 diff
(100 %id)
AL541580 placenta .a 124 to 949 1 to 827 exact fully sequenced,   827/827
(100 %)
2 diff
(99.8 %id)
BF726086 eye, Iris .a 151 to 670 1 to 520       520/520
(100 %)
1 diff
(99.9 %id)
AL568974 placenta .a 919 to 1590 673 to 1   fully sequenced,   673/673
(100 %)
1 diff
(99.9 %id)
DB323818   .a 1054 to 1598 545 to 1       545/545
(100 %)
0 diff
(100 %id)
BF726085 eye, Iris .a 1202 to 1603 420 to 19   tiling clone, AAA   402/402
(100 %)
0 diff
(100 %id)
NM_001098502.1   .b 1 to 1433 1 to 1433 exact RefSeq, AAA   1433/1433
(100 %)
0 diff
(100 %id)
CR598522 adult brain .b 14 to 1418 1 to 1405 exact tiling clone,   1405/1405
(100 %)
0 diff
(100 %id)
BI546541 brain, hippocampus .b 17 to 736 1 to 720 R116*     720/722
(99 %)
7 diff
(99.1 %id)
BF445395 carcinoid, lung .b 21 to 500 1 to 481     Submitted on the opposite strand 481/481
(100 %)
11 diff
(97.8 %id)
BU156598 eye, retinoblastoma .b 22 to 810 1 to 798 exact     798/911
(87 %)
13 diff
(98.6 %id)
TI_44168804   .b 22 to 736 90 to 804 R116*     715/806
(88 %)
8 diff
(99.1 %id)
BX406943 adult brain, brain .b 35 to 712 25 to 694 S70X fully sequenced,   670/694
(96 %)
9 diff
(98.8 %id)
BX393988 Neuroblastoma Cot 25-normalized .b 45 to 716 1 to 671 exact     671/671
(100 %)
2 diff
(99.8 %id)
BM906879 brain, hippocampus .b 64 to 537 1 to 476       476/1446
(32 %)
7 diff
(99.6 %id)
AK290764   .b 73 to 674 1 to 602 exact     602/602
(100 %)
0 diff
(100 %id)
CB151166 cervix, Uterine .b 74 to 458 1 to 385       385/385
(100 %)
4 diff
(99.0 %id)
DA617571   .b 74 to 656 2 to 584 exact capped   583/583
(100 %)
0 diff
(100 %id)
CN352747 embryonic stem cells, DMSO-treated H9 cellline .b 83 to 714 1 to 632 exact     632/632
(100 %)
0 diff
(100 %id)
BE890027 leiomyosarcoma, uterus .b 96 to 752 1 to 657 T135S     657/657
(100 %)
1 diff
(99.9 %id)
CD702252 normal nasopharynx .b 98 to 305 13 to 220       208/220
(94 %)
12 diff
(94.6 %id)
BU849306 mixed (pool of 40 RNAs) .b 103 to 901 1 to 808 exact     808/908
(88 %)
21 diff
(97.7 %id)
CD701909 normal nasopharynx .b 110 to 633 26 to 549 exact     524/549
(95 %)
7 diff
(98.8 %id)
BC033775 Testis, embryonal carcinoma .b 116 to 1428 12 to 1324 exact available from MGC, AAA   1313/1313
(100 %)
1 diff
(100.0 %id)
BP248446 Kidney .b 116 to 696 1 to 582 K9E     582/582
(100 %)
3 diff
(99.5 %id)
BG392290 embryonal carcinoma, cell line, testis .b 116 to 915 1 to 801 E38D E39G H40A G41W L42I ...     801/1003
(79 %)
32 diff
(96.9 %id)
DA459346 tongue, tumor tissue .b 117 to 541 2 to 426   capped   425/574
(74 %)
2 diff
(99.7 %id)
CR598357 Placenta Cot 25-normalized .b 119 to 1399 1 to 1281 exact     1281/1281
(100 %)
0 diff
(100 %id)
BX364796 Placenta Cot 25-normalized .b 119 to 830 1 to 712 D86X D103X P106X E115X E117X ...     712/852
(83 %)
15 diff
(98.3 %id)
BX378165 Placenta Cot 25-normalized .b 119 to 963 1 to 852 E117R K118E K119E P120A A121S ...     852/1065
(80 %)
37 diff
(96.6 %id)
AW245705 lung, small cell carcinoma .b 121 to 677 1 to 556 exact     556/556
(100 %)
5 diff
(99.2 %id)
BP281871 bone marrow .b 123 to 709 1 to 587 V15G E27Q E38Q K83I S85V ...     587/587
(100 %)
10 diff
(98.3 %id)
CB116773 Liver .b 125 to 626 1 to 502 exact     502/502
(100 %)
0 diff
(100 %id)
BG110476 Bone, osteosarcoma, cell line .b 128 to 760 11 to 647 exact     637/844
(75 %)
12 diff
(98.6 %id)
BC017082 Colon, adenocarcinoma .b 133 to 1433 1 to 1301 exact available from MGC, AAA   1301/1301
(100 %)
0 diff
(100 %id)
BE869073 adenocarcinoma, colon .b 154 to 844 1 to 686 F14L V15*     686/933
(73 %)
12 diff
(98.8 %id)
BU942404 mixed (pool of 40 RNAs) .b 154 to 810 1 to 665 Q90R     665/776
(85 %)
12 diff
(98.5 %id)
BG681963 skin, squamous cell carcinoma .b 162 to 1062 1 to 901 exact     901/901
(100 %)
14 diff
(98.5 %id)
BX279819 lymph, lymphoma, cell line .b 173 to 634 1 to 462 Q107X     462/462
(100 %)
2 diff
(99.6 %id)
BM467480 lymph, lymphoma, cell line .b 176 to 947 35 to 810 exact     776/1219
(63 %)
15 diff
(98.8 %id)
BM091249 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .b 182 to 679 1 to 498 E66D Q67F     498/498
(100 %)
4 diff
(99.2 %id)
CV030601 mixed .b 196 to 628 1 to 433 exact     433/530
(81 %)
4 diff
(99.3 %id)
CN352746 embryonic stem cells, cell lines H1, H7, andH9 .b 200 to 659 1 to 460       460/460
(100 %)
0 diff
(100 %id)
AW005986 anaplastic oligodendroglioma, brain .b 232 to 797 566 to 1       566/566
(100 %)
3 diff
(99.5 %id)
AW615111 Kidney .b 247 to 529 283 to 1       283/283
(100 %)
1 diff
(99.7 %id)
BQ214854 embryonal carcinoma, cell line, testis .b 254 to 1120 1 to 874       874/875
(99 %)
12 diff
(98.7 %id)
CR604058 Placenta Cot 25-normalized .b 316 to 1391 1 to 1076       1076/1076
(100 %)
0 diff
(100 %id)
AL548437 placenta, Placenta Cot 25-normalized .b 316 to 1005 1 to 690   fully sequenced,   690/690
(100 %)
1 diff
(99.9 %id)
BF000318 colon, colon tumor, RER+ .b 367 to 932 566 to 1       566/566
(100 %)
2 diff
(99.7 %id)
CF147116 CNCAP(3)T-225 cell line, Prostate .b 413 to 1062 8 to 660       653/660
(98 %)
6 diff
(99.1 %id)
TI_154179688   .b 413 to 1256 76 to 922       847/854
(99 %)
15 diff
(98.3 %id)
EC552387 Prostate .b 416 to 513 1 to 98       98/98
(100 %)
0 diff
(100 %id)
BE166122 head_neck .b 434 to 726 291 to 2     Submitted on the opposite strand 290/291
(99 %)
0 diff
(100 %id)
BU186563 large cell carcinoma, lung .b 447 to 1318 1 to 883       883/900
(98 %)
19 diff
(97.9 %id)
AW802779 uterus .b 491 to 607 123 to 8       116/123
(94 %)
0 diff
(100 %id)
CR618638 HeLa cells Cot 25-normalized .b 643 to 1431 1 to 789       789/789
(100 %)
0 diff
(100 %id)
BX384161   .b 643 to 1434 1 to 791   fully sequenced,   791/791
(100 %)
26 diff
(96.8 %id)
BX406942 adult brain, brain .b 682 to 1419 726 to 1   fully sequenced,   726/726
(100 %)
12 diff
(98.4 %id)
BG117561 adenocarcinoma, cell line, Liver .b 689 to 1350 1 to 662   AAA   662/758
(87 %)
5 diff
(99.4 %id)
BX351471 Placenta Cot 25-normalized .b 691 to 1415 733 to 1       733/806
(90 %)
39 diff
(95.2 %id)
BU940221 mixed (pool of 40 RNAs) .b 724 to 1126 1 to 404       404/775
(52 %)
7 diff
(99.1 %id)
BQ441781 epithelioid carcinoma, Pancreas .b 749 to 1433 1 to 683   AAA   683/683
(100 %)
4 diff
(99.5 %id)
D25986   .b 756 to 896 1 to 141     Submitted on the opposite strand 141/141
(100 %)
5 diff
(96.5 %id)
BX364795 Placenta Cot 25-normalized .b 807 to 1399 597 to 1       696/735
(94 %)
48 diff
(93.5 %id)
BF988836 placenta_normal .b 842 to 1233 1 to 392       392/392
(100 %)
6 diff
(98.5 %id)
BM841658 lymph node, stomach .b 859 to 1268 1 to 410       410/410
(100 %)
19 diff
(95.4 %id)
BM841295 lymph node, stomach .b 861 to 1049 1 to 190       190/190
(100 %)
2 diff
(99.0 %id)
BM840196 lymph node, stomach .b 861 to 1353 1 to 493       493/493
(100 %)
0 diff
(100 %id)
BM838619 lymph node, stomach .b 876 to 1370 1 to 495       495/495
(100 %)
2 diff
(99.6 %id)
BG036838 adenocarcinoma, cell line, Prostate .b 916 to 1433 1 to 518   AAA   518/518
(100 %)
0 diff
(100 %id)
AI493303 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 944 to 1429 488 to 3       486/488
(99 %)
0 diff
(100 %id)
AI498949 anaplastic oligodendroglioma, brain .b 945 to 1434 494 to 4   tiling clone,   491/494
(99 %)
0 diff
(100 %id)
BX393217   .b 967 to 1431 468 to 1   fully sequenced,   468/468
(100 %)
27 diff
(94.3 %id)
AL573001 placenta, Placenta Cot 25-normalized .b 975 to 1391 416 to 1   fully sequenced,   416/416
(100 %)
2 diff
(99.6 %id)
DB572766 hypothalamus .b 979 to 1433 1 to 455     Submitted on the opposite strand 455/455
(100 %)
3 diff
(99.4 %id)
AI392717 B-cell, chronic lymphotic leukemia .b 1019 to 1267 249 to 1       249/249
(100 %)
1 diff
(99.6 %id)
AI358212 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .b 1031 to 1429 418 to 20       399/418
(95 %)
0 diff
(100 %id)
AI090240 uterus .b 1067 to 1433 389 to 23   AAA   367/367
(100 %)
6 diff
(98.4 %id)
FN052624 breast carcinoma .b 1084 to 1171 9 to 90       82/90
(91 %)
6 diff
(93.4 %id)
AA633382 breast .b 1116 to 1429 327 to 14       314/327
(96 %)
0 diff
(100 %id)
BU955222 mixed (pool of 40 RNAs) .b 1118 to 1448 1 to 331   tiling clone,   331/893
(37 %)
9 diff
(99.0 %id)
FN092054 breast carcinoma .b 1152 to 1241 1 to 92       92/94
(97 %)
6 diff
(93.7 %id)
FN097468 breast carcinoma .b 1154 to 1246 1 to 94       94/95
(98 %)
2 diff
(97.9 %id)
BE769137 prostate_tumor .b 1156 to 1426 1 to 268       268/268
(100 %)
8 diff
(97.1 %id)
BF154888 breast .b 1156 to 1412 268 to 10       259/268
(96 %)
0 diff
(100 %id)
BE769138 prostate_tumor .b 1158 to 1426 1 to 270       270/270
(100 %)
5 diff
(98.2 %id)
DB536443 hippocampus .b 1158 to 1432 1 to 272     Submitted on the opposite strand 272/272
(100 %)
16 diff
(94.2 %id)
FN072202 breast carcinoma .b 1179 to 1246 1 to 70       70/71
(98 %)
3 diff
(95.8 %id)
DR978295 brain .b 1182 to 1300 118 to 1       118/120
(98 %)
6 diff
(95.0 %id)
BQ304390 breast .b 1198 to 1353 1 to 156       156/156
(100 %)
9 diff
(94.3 %id)
BE856452 Prostate .b 1281 to 1414 134 to 1       134/134
(100 %)
0 diff
(100 %id)
BP326396 prostata .c 1 to 584 1 to 584 exact tiling clone,   584/584
(100 %)
0 diff
(100 %id)
BM091552 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) Gene CHCHD4, variant not shown         Suspected internal deletion, this clone was ignored    
AA907641 pooled Gene CHCHD4, variant not shown         Suspected internal deletion, this clone was ignored    
AI343515 colon, colon tumor, RER+ Gene CHCHD4, variant not shown         Suspected internal deletion, this clone was ignored    
AI797699 pooled Gene CHCHD4, variant not shown         Suspected internal deletion, this clone was ignored    
AI769968 2 pooled tumors (clear cell type), Kidney Gene CHCHD4, variant not shown       AAA Suspected internal deletion, this clone was ignored    
DB073254 testis Gene CHCHD4, variant not shown       capped This clone was ignored    
DB340364 testis Gene CHCHD4, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C